Created
October 20, 2020 18:12
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Java CWL parsing error
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| ```cwl | |
| #!/usr/bin/env cwl-runner | |
| cwlVersion: v1.2 | |
| class: CommandLineTool | |
| inputs: | |
| - id: reference | |
| type: string | |
| inputBinding: { position: 1 } | |
| outputs: | |
| - id: sam | |
| type: File | |
| outputBinding: { glob: output.sam } | |
| ``` | |
| Stack trace: | |
| ``` | |
| [info] java.lang.RuntimeException: java.lang.reflect.InvocationTargetException | |
| [info] at org.w3id.cwl.cwl1_2.utils.EnumLoader.load(EnumLoader.java:23) | |
| [info] at org.w3id.cwl.cwl1_2.utils.EnumLoader.load(EnumLoader.java:5) | |
| [info] at org.w3id.cwl.cwl1_2.utils.UnionLoader.load(UnionLoader.java:26) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.load(Loader.java:16) | |
| [info] at org.w3id.cwl.cwl1_2.utils.TypeDslLoader.load(TypeDslLoader.java:79) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.load(Loader.java:16) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.loadField(Loader.java:85) | |
| [info] at org.w3id.cwl.cwl1_2.CommandInputParameterImpl.<init>(CommandInputParameterImpl.java:432) | |
| [info] at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) | |
| [info] at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) | |
| [info] at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) | |
| [info] at java.lang.reflect.Constructor.newInstance(Constructor.java:423) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RecordLoader.load(RecordLoader.java:23) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RecordLoader.load(RecordLoader.java:6) | |
| [info] at org.w3id.cwl.cwl1_2.utils.UnionLoader.load(UnionLoader.java:26) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.load(Loader.java:16) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.loadField(Loader.java:85) | |
| [info] at org.w3id.cwl.cwl1_2.utils.ArrayLoader.load(ArrayLoader.java:27) | |
| [info] at org.w3id.cwl.cwl1_2.utils.ArrayLoader.load(ArrayLoader.java:6) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.load(Loader.java:16) | |
| [info] at org.w3id.cwl.cwl1_2.utils.IdMapLoader.load(IdMapLoader.java:51) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.load(Loader.java:16) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.loadField(Loader.java:85) | |
| [info] at org.w3id.cwl.cwl1_2.CommandLineToolImpl.<init>(CommandLineToolImpl.java:434) | |
| [info] at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) | |
| [info] at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) | |
| [info] at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) | |
| [info] at java.lang.reflect.Constructor.newInstance(Constructor.java:423) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RecordLoader.load(RecordLoader.java:23) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RecordLoader.load(RecordLoader.java:6) | |
| [info] at org.w3id.cwl.cwl1_2.utils.UnionLoader.load(UnionLoader.java:26) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.documentLoad(Loader.java:41) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RootLoader.loadDocument(RootLoader.java:20) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RootLoader.loadDocument(RootLoader.java:86) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RootLoader.loadDocument(RootLoader.java:45) | |
| [info] at cwl.Parser$.parse(Parser.scala:22) | |
| [info] at cwl.Parser$.parseTool(Parser.scala:28) | |
| [info] at Tests.$anonfun$new$1(Tests.scala:14) | |
| [info] at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.scala:18) | |
| [info] at org.scalatest.OutcomeOf.outcomeOf(OutcomeOf.scala:85) | |
| [info] at org.scalatest.OutcomeOf.outcomeOf$(OutcomeOf.scala:83) | |
| [info] at org.scalatest.OutcomeOf$.outcomeOf(OutcomeOf.scala:104) | |
| [info] at org.scalatest.Transformer.apply(Transformer.scala:22) | |
| [info] at org.scalatest.Transformer.apply(Transformer.scala:20) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike$$anon$5.apply(AnyFlatSpecLike.scala:1683) | |
| [info] at org.scalatest.TestSuite.withFixture(TestSuite.scala:196) | |
| [info] at org.scalatest.TestSuite.withFixture$(TestSuite.scala:195) | |
| [info] at org.scalatest.flatspec.AnyFlatSpec.withFixture(AnyFlatSpec.scala:1685) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.invokeWithFixture$1(AnyFlatSpecLike.scala:1681) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.$anonfun$runTest$1(AnyFlatSpecLike.scala:1693) | |
| [info] at org.scalatest.SuperEngine.runTestImpl(Engine.scala:306) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.runTest(AnyFlatSpecLike.scala:1693) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.runTest$(AnyFlatSpecLike.scala:1675) | |
| [info] at org.scalatest.flatspec.AnyFlatSpec.runTest(AnyFlatSpec.scala:1685) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.$anonfun$runTests$1(AnyFlatSpecLike.scala:1751) | |
| [info] at org.scalatest.SuperEngine.$anonfun$runTestsInBranch$1(Engine.scala:413) | |
| [info] at scala.collection.immutable.List.foreach(List.scala:333) | |
| [info] at org.scalatest.SuperEngine.traverseSubNodes$1(Engine.scala:401) | |
| [info] at org.scalatest.SuperEngine.runTestsInBranch(Engine.scala:396) | |
| [info] at org.scalatest.SuperEngine.runTestsImpl(Engine.scala:475) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.runTests(AnyFlatSpecLike.scala:1751) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.runTests$(AnyFlatSpecLike.scala:1750) | |
| [info] at org.scalatest.flatspec.AnyFlatSpec.runTests(AnyFlatSpec.scala:1685) | |
| [info] at org.scalatest.Suite.run(Suite.scala:1112) | |
| [info] at org.scalatest.Suite.run$(Suite.scala:1094) | |
| [info] at org.scalatest.flatspec.AnyFlatSpec.org$scalatest$flatspec$AnyFlatSpecLike$$super$run(AnyFlatSpec.scala:1685) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.$anonfun$run$1(AnyFlatSpecLike.scala:1796) | |
| [info] at org.scalatest.SuperEngine.runImpl(Engine.scala:535) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.run(AnyFlatSpecLike.scala:1796) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.run$(AnyFlatSpecLike.scala:1794) | |
| [info] at org.scalatest.flatspec.AnyFlatSpec.run(AnyFlatSpec.scala:1685) | |
| [info] at org.scalatest.tools.Framework.org$scalatest$tools$Framework$$runSuite(Framework.scala:318) | |
| [info] at org.scalatest.tools.Framework$ScalaTestTask.execute(Framework.scala:513) | |
| [info] at sbt.TestRunner.runTest$1(TestFramework.scala:139) | |
| [info] at sbt.TestRunner.run(TestFramework.scala:154) | |
| [info] at sbt.TestFramework$$anon$3$$anonfun$$lessinit$greater$1.$anonfun$apply$1(TestFramework.scala:317) | |
| [info] at sbt.TestFramework$.sbt$TestFramework$$withContextLoader(TestFramework.scala:277) | |
| [info] at sbt.TestFramework$$anon$3$$anonfun$$lessinit$greater$1.apply(TestFramework.scala:317) | |
| [info] at sbt.TestFramework$$anon$3$$anonfun$$lessinit$greater$1.apply(TestFramework.scala:317) | |
| [info] at sbt.TestFunction.apply(TestFramework.scala:329) | |
| [info] at sbt.Tests$.processRunnable$1(Tests.scala:350) | |
| [info] at sbt.Tests$.$anonfun$makeSerial$1(Tests.scala:356) | |
| [info] at sbt.std.Transform$$anon$3.$anonfun$apply$2(Transform.scala:46) | |
| [info] at sbt.std.Transform$$anon$4.work(Transform.scala:67) | |
| [info] at sbt.Execute.$anonfun$submit$2(Execute.scala:281) | |
| [info] at sbt.internal.util.ErrorHandling$.wideConvert(ErrorHandling.scala:19) | |
| [info] at sbt.Execute.work(Execute.scala:290) | |
| [info] at sbt.Execute.$anonfun$submit$1(Execute.scala:281) | |
| [info] at sbt.ConcurrentRestrictions$$anon$4.$anonfun$submitValid$1(ConcurrentRestrictions.scala:178) | |
| [info] at sbt.CompletionService$$anon$2.call(CompletionService.scala:37) | |
| [info] at java.util.concurrent.FutureTask.run(FutureTask.java:266) | |
| [info] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) | |
| [info] at java.util.concurrent.FutureTask.run(FutureTask.java:266) | |
| [info] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) | |
| [info] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) | |
| [info] at java.lang.Thread.run(Thread.java:748) | |
| [info] Cause: java.lang.reflect.InvocationTargetException: | |
| [info] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) | |
| [info] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) | |
| [info] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) | |
| [info] at java.lang.reflect.Method.invoke(Method.java:498) | |
| [info] at org.w3id.cwl.cwl1_2.utils.EnumLoader.load(EnumLoader.java:20) | |
| [info] at org.w3id.cwl.cwl1_2.utils.EnumLoader.load(EnumLoader.java:5) | |
| [info] at org.w3id.cwl.cwl1_2.utils.UnionLoader.load(UnionLoader.java:26) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.load(Loader.java:16) | |
| [info] at org.w3id.cwl.cwl1_2.utils.TypeDslLoader.load(TypeDslLoader.java:79) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.load(Loader.java:16) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.loadField(Loader.java:85) | |
| [info] at org.w3id.cwl.cwl1_2.CommandInputParameterImpl.<init>(CommandInputParameterImpl.java:432) | |
| [info] at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) | |
| [info] at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) | |
| [info] at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) | |
| [info] at java.lang.reflect.Constructor.newInstance(Constructor.java:423) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RecordLoader.load(RecordLoader.java:23) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RecordLoader.load(RecordLoader.java:6) | |
| [info] at org.w3id.cwl.cwl1_2.utils.UnionLoader.load(UnionLoader.java:26) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.load(Loader.java:16) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.loadField(Loader.java:85) | |
| [info] at org.w3id.cwl.cwl1_2.utils.ArrayLoader.load(ArrayLoader.java:27) | |
| [info] at org.w3id.cwl.cwl1_2.utils.ArrayLoader.load(ArrayLoader.java:6) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.load(Loader.java:16) | |
| [info] at org.w3id.cwl.cwl1_2.utils.IdMapLoader.load(IdMapLoader.java:51) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.load(Loader.java:16) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.loadField(Loader.java:85) | |
| [info] at org.w3id.cwl.cwl1_2.CommandLineToolImpl.<init>(CommandLineToolImpl.java:434) | |
| [info] at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) | |
| [info] at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) | |
| [info] at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) | |
| [info] at java.lang.reflect.Constructor.newInstance(Constructor.java:423) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RecordLoader.load(RecordLoader.java:23) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RecordLoader.load(RecordLoader.java:6) | |
| [info] at org.w3id.cwl.cwl1_2.utils.UnionLoader.load(UnionLoader.java:26) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.documentLoad(Loader.java:41) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RootLoader.loadDocument(RootLoader.java:20) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RootLoader.loadDocument(RootLoader.java:86) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RootLoader.loadDocument(RootLoader.java:45) | |
| [info] at cwl.Parser$.parse(Parser.scala:22) | |
| [info] at cwl.Parser$.parseTool(Parser.scala:28) | |
| [info] at Tests.$anonfun$new$1(Tests.scala:14) | |
| [info] at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.scala:18) | |
| [info] at org.scalatest.OutcomeOf.outcomeOf(OutcomeOf.scala:85) | |
| [info] at org.scalatest.OutcomeOf.outcomeOf$(OutcomeOf.scala:83) | |
| [info] at org.scalatest.OutcomeOf$.outcomeOf(OutcomeOf.scala:104) | |
| [info] at org.scalatest.Transformer.apply(Transformer.scala:22) | |
| [info] at org.scalatest.Transformer.apply(Transformer.scala:20) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike$$anon$5.apply(AnyFlatSpecLike.scala:1683) | |
| [info] at org.scalatest.TestSuite.withFixture(TestSuite.scala:196) | |
| [info] at org.scalatest.TestSuite.withFixture$(TestSuite.scala:195) | |
| [info] at org.scalatest.flatspec.AnyFlatSpec.withFixture(AnyFlatSpec.scala:1685) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.invokeWithFixture$1(AnyFlatSpecLike.scala:1681) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.$anonfun$runTest$1(AnyFlatSpecLike.scala:1693) | |
| [info] at org.scalatest.SuperEngine.runTestImpl(Engine.scala:306) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.runTest(AnyFlatSpecLike.scala:1693) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.runTest$(AnyFlatSpecLike.scala:1675) | |
| [info] at org.scalatest.flatspec.AnyFlatSpec.runTest(AnyFlatSpec.scala:1685) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.$anonfun$runTests$1(AnyFlatSpecLike.scala:1751) | |
| [info] at org.scalatest.SuperEngine.$anonfun$runTestsInBranch$1(Engine.scala:413) | |
| [info] at scala.collection.immutable.List.foreach(List.scala:333) | |
| [info] at org.scalatest.SuperEngine.traverseSubNodes$1(Engine.scala:401) | |
| [info] at org.scalatest.SuperEngine.runTestsInBranch(Engine.scala:396) | |
| [info] at org.scalatest.SuperEngine.runTestsImpl(Engine.scala:475) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.runTests(AnyFlatSpecLike.scala:1751) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.runTests$(AnyFlatSpecLike.scala:1750) | |
| [info] at org.scalatest.flatspec.AnyFlatSpec.runTests(AnyFlatSpec.scala:1685) | |
| [info] at org.scalatest.Suite.run(Suite.scala:1112) | |
| [info] at org.scalatest.Suite.run$(Suite.scala:1094) | |
| [info] at org.scalatest.flatspec.AnyFlatSpec.org$scalatest$flatspec$AnyFlatSpecLike$$super$run(AnyFlatSpec.scala:1685) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.$anonfun$run$1(AnyFlatSpecLike.scala:1796) | |
| [info] at org.scalatest.SuperEngine.runImpl(Engine.scala:535) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.run(AnyFlatSpecLike.scala:1796) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.run$(AnyFlatSpecLike.scala:1794) | |
| [info] at org.scalatest.flatspec.AnyFlatSpec.run(AnyFlatSpec.scala:1685) | |
| [info] at org.scalatest.tools.Framework.org$scalatest$tools$Framework$$runSuite(Framework.scala:318) | |
| [info] at org.scalatest.tools.Framework$ScalaTestTask.execute(Framework.scala:513) | |
| [info] at sbt.TestRunner.runTest$1(TestFramework.scala:139) | |
| [info] at sbt.TestRunner.run(TestFramework.scala:154) | |
| [info] at sbt.TestFramework$$anon$3$$anonfun$$lessinit$greater$1.$anonfun$apply$1(TestFramework.scala:317) | |
| [info] at sbt.TestFramework$.sbt$TestFramework$$withContextLoader(TestFramework.scala:277) | |
| [info] at sbt.TestFramework$$anon$3$$anonfun$$lessinit$greater$1.apply(TestFramework.scala:317) | |
| [info] at sbt.TestFramework$$anon$3$$anonfun$$lessinit$greater$1.apply(TestFramework.scala:317) | |
| [info] at sbt.TestFunction.apply(TestFramework.scala:329) | |
| [info] at sbt.Tests$.processRunnable$1(Tests.scala:350) | |
| [info] at sbt.Tests$.$anonfun$makeSerial$1(Tests.scala:356) | |
| [info] at sbt.std.Transform$$anon$3.$anonfun$apply$2(Transform.scala:46) | |
| [info] at sbt.std.Transform$$anon$4.work(Transform.scala:67) | |
| [info] at sbt.Execute.$anonfun$submit$2(Execute.scala:281) | |
| [info] at sbt.internal.util.ErrorHandling$.wideConvert(ErrorHandling.scala:19) | |
| [info] at sbt.Execute.work(Execute.scala:290) | |
| [info] at sbt.Execute.$anonfun$submit$1(Execute.scala:281) | |
| [info] at sbt.ConcurrentRestrictions$$anon$4.$anonfun$submitValid$1(ConcurrentRestrictions.scala:178) | |
| [info] at sbt.CompletionService$$anon$2.call(CompletionService.scala:37) | |
| [info] at java.util.concurrent.FutureTask.run(FutureTask.java:266) | |
| [info] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) | |
| [info] at java.util.concurrent.FutureTask.run(FutureTask.java:266) | |
| [info] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) | |
| [info] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) | |
| [info] at java.lang.Thread.run(Thread.java:748) | |
| [info] Cause: org.w3id.cwl.cwl1_2.utils.ValidationException: Expected one of [Ljava.lang.String;@400a747c | |
| [info] at org.w3id.cwl.cwl1_2.CWLType.fromDocumentVal(CWLType.java:22) | |
| [info] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) | |
| [info] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) | |
| [info] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) | |
| [info] at java.lang.reflect.Method.invoke(Method.java:498) | |
| [info] at org.w3id.cwl.cwl1_2.utils.EnumLoader.load(EnumLoader.java:20) | |
| [info] at org.w3id.cwl.cwl1_2.utils.EnumLoader.load(EnumLoader.java:5) | |
| [info] at org.w3id.cwl.cwl1_2.utils.UnionLoader.load(UnionLoader.java:26) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.load(Loader.java:16) | |
| [info] at org.w3id.cwl.cwl1_2.utils.TypeDslLoader.load(TypeDslLoader.java:79) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.load(Loader.java:16) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.loadField(Loader.java:85) | |
| [info] at org.w3id.cwl.cwl1_2.CommandInputParameterImpl.<init>(CommandInputParameterImpl.java:432) | |
| [info] at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) | |
| [info] at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) | |
| [info] at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) | |
| [info] at java.lang.reflect.Constructor.newInstance(Constructor.java:423) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RecordLoader.load(RecordLoader.java:23) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RecordLoader.load(RecordLoader.java:6) | |
| [info] at org.w3id.cwl.cwl1_2.utils.UnionLoader.load(UnionLoader.java:26) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.load(Loader.java:16) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.loadField(Loader.java:85) | |
| [info] at org.w3id.cwl.cwl1_2.utils.ArrayLoader.load(ArrayLoader.java:27) | |
| [info] at org.w3id.cwl.cwl1_2.utils.ArrayLoader.load(ArrayLoader.java:6) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.load(Loader.java:16) | |
| [info] at org.w3id.cwl.cwl1_2.utils.IdMapLoader.load(IdMapLoader.java:51) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.load(Loader.java:16) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.loadField(Loader.java:85) | |
| [info] at org.w3id.cwl.cwl1_2.CommandLineToolImpl.<init>(CommandLineToolImpl.java:434) | |
| [info] at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) | |
| [info] at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) | |
| [info] at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) | |
| [info] at java.lang.reflect.Constructor.newInstance(Constructor.java:423) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RecordLoader.load(RecordLoader.java:23) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RecordLoader.load(RecordLoader.java:6) | |
| [info] at org.w3id.cwl.cwl1_2.utils.UnionLoader.load(UnionLoader.java:26) | |
| [info] at org.w3id.cwl.cwl1_2.utils.Loader.documentLoad(Loader.java:41) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RootLoader.loadDocument(RootLoader.java:20) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RootLoader.loadDocument(RootLoader.java:86) | |
| [info] at org.w3id.cwl.cwl1_2.utils.RootLoader.loadDocument(RootLoader.java:45) | |
| [info] at cwl.Parser$.parse(Parser.scala:22) | |
| [info] at cwl.Parser$.parseTool(Parser.scala:28) | |
| [info] at Tests.$anonfun$new$1(Tests.scala:14) | |
| [info] at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.scala:18) | |
| [info] at org.scalatest.OutcomeOf.outcomeOf(OutcomeOf.scala:85) | |
| [info] at org.scalatest.OutcomeOf.outcomeOf$(OutcomeOf.scala:83) | |
| [info] at org.scalatest.OutcomeOf$.outcomeOf(OutcomeOf.scala:104) | |
| [info] at org.scalatest.Transformer.apply(Transformer.scala:22) | |
| [info] at org.scalatest.Transformer.apply(Transformer.scala:20) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike$$anon$5.apply(AnyFlatSpecLike.scala:1683) | |
| [info] at org.scalatest.TestSuite.withFixture(TestSuite.scala:196) | |
| [info] at org.scalatest.TestSuite.withFixture$(TestSuite.scala:195) | |
| [info] at org.scalatest.flatspec.AnyFlatSpec.withFixture(AnyFlatSpec.scala:1685) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.invokeWithFixture$1(AnyFlatSpecLike.scala:1681) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.$anonfun$runTest$1(AnyFlatSpecLike.scala:1693) | |
| [info] at org.scalatest.SuperEngine.runTestImpl(Engine.scala:306) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.runTest(AnyFlatSpecLike.scala:1693) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.runTest$(AnyFlatSpecLike.scala:1675) | |
| [info] at org.scalatest.flatspec.AnyFlatSpec.runTest(AnyFlatSpec.scala:1685) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.$anonfun$runTests$1(AnyFlatSpecLike.scala:1751) | |
| [info] at org.scalatest.SuperEngine.$anonfun$runTestsInBranch$1(Engine.scala:413) | |
| [info] at scala.collection.immutable.List.foreach(List.scala:333) | |
| [info] at org.scalatest.SuperEngine.traverseSubNodes$1(Engine.scala:401) | |
| [info] at org.scalatest.SuperEngine.runTestsInBranch(Engine.scala:396) | |
| [info] at org.scalatest.SuperEngine.runTestsImpl(Engine.scala:475) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.runTests(AnyFlatSpecLike.scala:1751) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.runTests$(AnyFlatSpecLike.scala:1750) | |
| [info] at org.scalatest.flatspec.AnyFlatSpec.runTests(AnyFlatSpec.scala:1685) | |
| [info] at org.scalatest.Suite.run(Suite.scala:1112) | |
| [info] at org.scalatest.Suite.run$(Suite.scala:1094) | |
| [info] at org.scalatest.flatspec.AnyFlatSpec.org$scalatest$flatspec$AnyFlatSpecLike$$super$run(AnyFlatSpec.scala:1685) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.$anonfun$run$1(AnyFlatSpecLike.scala:1796) | |
| [info] at org.scalatest.SuperEngine.runImpl(Engine.scala:535) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.run(AnyFlatSpecLike.scala:1796) | |
| [info] at org.scalatest.flatspec.AnyFlatSpecLike.run$(AnyFlatSpecLike.scala:1794) | |
| [info] at org.scalatest.flatspec.AnyFlatSpec.run(AnyFlatSpec.scala:1685) | |
| [info] at org.scalatest.tools.Framework.org$scalatest$tools$Framework$$runSuite(Framework.scala:318) | |
| [info] at org.scalatest.tools.Framework$ScalaTestTask.execute(Framework.scala:513) | |
| [info] at sbt.TestRunner.runTest$1(TestFramework.scala:139) | |
| [info] at sbt.TestRunner.run(TestFramework.scala:154) | |
| [info] at sbt.TestFramework$$anon$3$$anonfun$$lessinit$greater$1.$anonfun$apply$1(TestFramework.scala:317) | |
| [info] at sbt.TestFramework$.sbt$TestFramework$$withContextLoader(TestFramework.scala:277) | |
| [info] at sbt.TestFramework$$anon$3$$anonfun$$lessinit$greater$1.apply(TestFramework.scala:317) | |
| [info] at sbt.TestFramework$$anon$3$$anonfun$$lessinit$greater$1.apply(TestFramework.scala:317) | |
| [info] at sbt.TestFunction.apply(TestFramework.scala:329) | |
| [info] at sbt.Tests$.processRunnable$1(Tests.scala:350) | |
| [info] at sbt.Tests$.$anonfun$makeSerial$1(Tests.scala:356) | |
| [info] at sbt.std.Transform$$anon$3.$anonfun$apply$2(Transform.scala:46) | |
| [info] at sbt.std.Transform$$anon$4.work(Transform.scala:67) | |
| [info] at sbt.Execute.$anonfun$submit$2(Execute.scala:281) | |
| [info] at sbt.internal.util.ErrorHandling$.wideConvert(ErrorHandling.scala:19) | |
| [info] at sbt.Execute.work(Execute.scala:290) | |
| [info] at sbt.Execute.$anonfun$submit$1(Execute.scala:281) | |
| [info] at sbt.ConcurrentRestrictions$$anon$4.$anonfun$submitValid$1(ConcurrentRestrictions.scala:178) | |
| [info] at sbt.CompletionService$$anon$2.call(CompletionService.scala:37) | |
| [info] at java.util.concurrent.FutureTask.run(FutureTask.java:266) | |
| [info] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) | |
| [info] at java.util.concurrent.FutureTask.run(FutureTask.java:266) | |
| [info] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) | |
| [info] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) | |
| [info] at java.lang.Thread.run(Thread.java:748) | |
| ``` |
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