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@jdidion
Created September 27, 2016 20:37
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# This list was boostrapped from the FastQC contaminants.txt.
# TODO: add missing Illumina adapters from official list at:
# http://support.illumina.com/downloads/illumina-customer-sequence-letter.html
>IlluminaSingleEndAdapter1
GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG
>IlluminaSingleEndAdapter2
CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT
>IlluminaSingleEndPCRPrimer1
AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT
>IlluminaSingleEndPCRPrimer2
CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT
>IlluminaSingleEndSequencingPrimer
ACACTCTTTCCCTACACGACGCTCTTCCGATCT
>IlluminaPairedEndAdapter1
ACACTCTTTCCCTACACGACGCTCTTCCGATCT
>IlluminaPairedEndAdapter2
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
>IlluminaPariedEndPCRPrimer1
AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT
>IlluminaPairedEndPCRPrimer2
CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT
>IlluminaPariedEndSequencingPrimer1
ACACTCTTTCCCTACACGACGCTCTTCCGATCT
>IlluminaPairedEndSequencingPrimer2
CGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT
>IlluminaDpnIIexpressionAdapter1
ACAGGTTCAGAGTTCTACAGTCCGAC
>IlluminaDpnIIexpressionAdapter2
CAAGCAGAAGACGGCATACGA
>IlluminaDpnIIexpressionPCRPrimer1
CAAGCAGAAGACGGCATACGA
>IlluminaDpnIIexpressionPCRPrimer2
AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
>IlluminaDpnIIexpressionSequencingPrimer
CGACAGGTTCAGAGTTCTACAGTCCGACGATC
>IlluminaNlaIIIexpressionAdapter1
ACAGGTTCAGAGTTCTACAGTCCGACATG
>IlluminaNlaIIIexpressionAdapter2
CAAGCAGAAGACGGCATACGA
>IlluminaNlaIIIexpressionPCRPrimer1
CAAGCAGAAGACGGCATACGA
>IlluminaNlaIIIexpressionPCRPrimer2
AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
>IlluminaNlaIIIexpressionSequencingPrimer
CCGACAGGTTCAGAGTTCTACAGTCCGACATG
>IlluminaSmallRNAAdapter1
GTTCAGAGTTCTACAGTCCGACGATC
>IlluminaSmallRNAAdapter2
TGGAATTCTCGGGTGCCAAGG
>IlluminaSmallRNARTPrimer
CAAGCAGAAGACGGCATACGA
>IlluminaSmallRNAPCRPrimer1
CAAGCAGAAGACGGCATACGA
>IlluminaSmallRNAPCRPrimer2
AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
>IlluminaSmallRNASequencingPrimer
CGACAGGTTCAGAGTTCTACAGTCCGACGATC
>IlluminaMultiplexingAdapter1
GATCGGAAGAGCACACGTCT
>IlluminaMultiplexingAdapter2
ACACTCTTTCCCTACACGACGCTCTTCCGATCT
>IlluminaMultiplexingPCRPrimer1.01
AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT
>IlluminaMultiplexingPCRPrimer2.01
GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT
>IlluminaMultiplexingRead1SequencingPrimer
ACACTCTTTCCCTACACGACGCTCTTCCGATCT
>IlluminaMultiplexingIndexSequencingPrimer
GATCGGAAGAGCACACGTCTGAACTCCAGTCAC
>IlluminaMultiplexingRead2SequencingPrimer
GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT
>IlluminaPCRPrimerIndex1
CAAGCAGAAGACGGCATACGAGATCGTGATGTGACTGGAGTTC
>IlluminaPCRPrimerIndex2
CAAGCAGAAGACGGCATACGAGATACATCGGTGACTGGAGTTC
>IlluminaPCRPrimerIndex3
CAAGCAGAAGACGGCATACGAGATGCCTAAGTGACTGGAGTTC
>IlluminaPCRPrimerIndex4
CAAGCAGAAGACGGCATACGAGATTGGTCAGTGACTGGAGTTC
>IlluminaPCRPrimerIndex5
CAAGCAGAAGACGGCATACGAGATCACTGTGTGACTGGAGTTC
>IlluminaPCRPrimerIndex6
CAAGCAGAAGACGGCATACGAGATATTGGCGTGACTGGAGTTC
>IlluminaPCRPrimerIndex7
CAAGCAGAAGACGGCATACGAGATGATCTGGTGACTGGAGTTC
>IlluminaPCRPrimerIndex8
CAAGCAGAAGACGGCATACGAGATTCAAGTGTGACTGGAGTTC
>IlluminaPCRPrimerIndex9
CAAGCAGAAGACGGCATACGAGATCTGATCGTGACTGGAGTTC
>IlluminaPCRPrimerIndex10
CAAGCAGAAGACGGCATACGAGATAAGCTAGTGACTGGAGTTC
>IlluminaPCRPrimerIndex11
CAAGCAGAAGACGGCATACGAGATGTAGCCGTGACTGGAGTTC
>IlluminaPCRPrimerIndex12
CAAGCAGAAGACGGCATACGAGATTACAAGGTGACTGGAGTTC
>IlluminaDpnIIGexAdapter1
GATCGTCGGACTGTAGAACTCTGAAC
>IlluminaDpnIIGexAdapter1.01
ACAGGTTCAGAGTTCTACAGTCCGAC
>IlluminaDpnIIGexAdapter2
CAAGCAGAAGACGGCATACGA
>IlluminaDpnIIGexAdapter2.01
TCGTATGCCGTCTTCTGCTTG
>IlluminaDpnIIGexPCRPrimer1
CAAGCAGAAGACGGCATACGA
>IlluminaDpnIIGexPCRPrimer2
AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
>IlluminaDpnIIGexSequencingPrimer
CGACAGGTTCAGAGTTCTACAGTCCGACGATC
>IlluminaNlaIIIGexAdapter1.01
TCGGACTGTAGAACTCTGAAC
>IlluminaNlaIIIGexAdapter1.02
ACAGGTTCAGAGTTCTACAGTCCGACATG
>IlluminaNlaIIIGexAdapter2.01
CAAGCAGAAGACGGCATACGA
>IlluminaNlaIIIGexAdapter2.02
TCGTATGCCGTCTTCTGCTTG
>IlluminaNlaIIIGexPCRPrimer1
CAAGCAGAAGACGGCATACGA
>IlluminaNlaIIIGexPCRPrimer2
AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
>IlluminaNlaIIIGexSequencingPrimer
CCGACAGGTTCAGAGTTCTACAGTCCGACATG
>IlluminaSmallRNARTPrimer
CAAGCAGAAGACGGCATACGA
>Illumina5pRNAAdapter
GTTCAGAGTTCTACAGTCCGACGATC
>IlluminaRNAAdapter1
TGGAATTCTCGGGTGCCAAGG
>IlluminaSmallRNA3pAdapter1
ATCTCGTATGCCGTCTTCTGCTTG
>IlluminaSmallRNAPCRPrimer1
CAAGCAGAAGACGGCATACGA
>IlluminaSmallRNAPCRPrimer2
AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
>IlluminaSmallRNASequencingPrimer
CGACAGGTTCAGAGTTCTACAGTCCGACGATC
>TruSeqUniversalAdapter
AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT
>TruSeqAdapterIndex1
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex2
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex3
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex4
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex5
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex6
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex7
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex8
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex9
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex10
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex11
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex12
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex13
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACTCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex14
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex15
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGTCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex16
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCTCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex18
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCATCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex19
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACTCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex20
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCTTCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex21
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGGTCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex22
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTACGTTCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex23
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCACTCTTCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex25
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTGATATCTCGTATGCCGTCTTCTGCTTG
>TruSeqAdapterIndex27
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCCTTTCTCGTATGCCGTCTTCTGCTTG
>IlluminaRNARTPrimer
GCCTTGGCACCCGAGAATTCCA
>IlluminaRNAPCRPrimer
AATGATACGGCGACCACCGAGATCTACACGTTCAGAGTTCTACAGTCCGA
>RNAPCRPrimerIndex1
CAAGCAGAAGACGGCATACGAGATCGTGATGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex2
CAAGCAGAAGACGGCATACGAGATACATCGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex3
CAAGCAGAAGACGGCATACGAGATGCCTAAGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex4
CAAGCAGAAGACGGCATACGAGATTGGTCAGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex5
CAAGCAGAAGACGGCATACGAGATCACTGTGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex6
CAAGCAGAAGACGGCATACGAGATATTGGCGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex7
CAAGCAGAAGACGGCATACGAGATGATCTGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex8
CAAGCAGAAGACGGCATACGAGATTCAAGTGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex9
CAAGCAGAAGACGGCATACGAGATCTGATCGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex10
CAAGCAGAAGACGGCATACGAGATAAGCTAGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex11
CAAGCAGAAGACGGCATACGAGATGTAGCCGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex12
CAAGCAGAAGACGGCATACGAGATTACAAGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex13
CAAGCAGAAGACGGCATACGAGATTTGACTGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex14
CAAGCAGAAGACGGCATACGAGATGGAACTGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex15
CAAGCAGAAGACGGCATACGAGATTGACATGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex16
CAAGCAGAAGACGGCATACGAGATGGACGGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex17
CAAGCAGAAGACGGCATACGAGATCTCTACGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex18
CAAGCAGAAGACGGCATACGAGATGCGGACGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex19
CAAGCAGAAGACGGCATACGAGATTTTCACGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex20
CAAGCAGAAGACGGCATACGAGATGGCCACGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex21
CAAGCAGAAGACGGCATACGAGATCGAAACGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex22
CAAGCAGAAGACGGCATACGAGATCGTACGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex23
CAAGCAGAAGACGGCATACGAGATCCACTCGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex24
CAAGCAGAAGACGGCATACGAGATGCTACCGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex25
CAAGCAGAAGACGGCATACGAGATATCAGTGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex26
CAAGCAGAAGACGGCATACGAGATGCTCATGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex27
CAAGCAGAAGACGGCATACGAGATAGGAATGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex28
CAAGCAGAAGACGGCATACGAGATCTTTTGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex29
CAAGCAGAAGACGGCATACGAGATTAGTTGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex30
CAAGCAGAAGACGGCATACGAGATCCGGTGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex31
CAAGCAGAAGACGGCATACGAGATATCGTGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex32
CAAGCAGAAGACGGCATACGAGATTGAGTGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex33
CAAGCAGAAGACGGCATACGAGATCGCCTGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex34
CAAGCAGAAGACGGCATACGAGATGCCATGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex35
CAAGCAGAAGACGGCATACGAGATAAAATGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex36
CAAGCAGAAGACGGCATACGAGATTGTTGGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex37
CAAGCAGAAGACGGCATACGAGATATTCCGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex38
CAAGCAGAAGACGGCATACGAGATAGCTAGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex39
CAAGCAGAAGACGGCATACGAGATGTATAGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex40
CAAGCAGAAGACGGCATACGAGATTCTGAGGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex41
CAAGCAGAAGACGGCATACGAGATGTCGTCGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex42
CAAGCAGAAGACGGCATACGAGATCGATTAGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex43
CAAGCAGAAGACGGCATACGAGATGCTGTAGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex44
CAAGCAGAAGACGGCATACGAGATATTATAGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex45
CAAGCAGAAGACGGCATACGAGATGAATGAGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex46
CAAGCAGAAGACGGCATACGAGATTCGGGAGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex47
CAAGCAGAAGACGGCATACGAGATCTTCGAGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>RNAPCRPrimerIndex48
CAAGCAGAAGACGGCATACGAGATTGCCGAGTGACTGGAGTTCCTTGGCACCCGAGAATTCCA
>ABIDynabeadEcoPOligo
CTGATCTAGAGGTACCGGATCCCAGCAGT
>ABISolid3AdapterA
CTGCCCCGGGTTCCTCATTCTCTCAGCAGCATG
>ABISolid3AdapterB
CCACTACGCCTCCGCTTTCCTCTCTATGGGCAGTCGGTGAT
>ABISolid35'AMPPrimer
CCACTACGCCTCCGCTTTCCTCTCTATG
>ABISolid33'AMPPrimer
CTGCCCCGGGTTCCTCATTCT
>ABISolid3EF1alphaSensePrimer
CATGTGTGTTGAGAGCTTC
>ABISolid3EF1alphaAntisensePrimer
GAAAACCAAAGTGGTCCAC
>ABISolid3GAPDHForwardPrimer
TTAGCACCCCTGGCCAAGG
>ABISolid3GAPDHReversePrimer
CTTACTCCTTGGAGGCCATG
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