| #### 1. Sign up at GitHub.com ################################################ | |
| ## If you do not have a GitHub account, sign up here: | |
| ## https://github.com/join | |
| # ---------------------------------------------------------------------------- | |
| #### 2. Install git ########################################################## | |
| ## If you do not have git installed, please do so: |
| #!/bin/bash | |
| ## Bash Script to clear cached memory on (Ubuntu/Debian) Linux | |
| ## By Philipp Klaus | |
| ## see <http://blog.philippklaus.de/2011/02/clear-cached-memory-on-ubuntu/> | |
| if [ "$(whoami)" != "root" ] | |
| then | |
| echo "You have to run this script as Superuser!" | |
| exit 1 | |
| fi |
| # Assumes you've already run coverageBed -hist, and grep'd '^all'. E.g. something like: | |
| # find *bam | parallel 'bedtools coverage -hist -b {} -a /home/jgarces/genomes/sureSelect/sureSelect_v5_UTR/S04380219_Covered.bed | grep ^all > coverages/{}.hist.all.txt' | |
| # Get a list of the bedtools output files you'd like to read in (all-in-one) | |
| #print(files <- list.files(pattern="all.txt$")) | |
| # Get a list of the bedtools output files you'd like to read in (by list) | |
| args <- commandArgs(trailingOn = TRUE) | |
| files <- scan(args[1], what = "", sep = "\n") | |
| print(files <- paste0(files, ".hist.all.txt")) |
People
 :bowtie: |
😄 :smile: |
😆 :laughing: |
|---|---|---|
😊 :blush: |
😃 :smiley: |
:relaxed: |
😏 :smirk: |
😍 :heart_eyes: |
😘 :kissing_heart: |
😚 :kissing_closed_eyes: |
😳 :flushed: |
😌 :relieved: |
😆 :satisfied: |
😁 :grin: |
😉 :wink: |
😜 :stuck_out_tongue_winking_eye: |
😝 :stuck_out_tongue_closed_eyes: |
😀 :grinning: |
😗 :kissing: |
😙 :kissing_smiling_eyes: |
😛 :stuck_out_tongue: |
| ## Dual axes for ggplot2 | |
| Modified from: | |
| >https://stackoverflow.com/questions/21026598/ggplot2-adding-secondary-transformed-x-axis-on-top-of-plot | |
| >https://rpubs.com/kohske/dual_axis_in_ggplot2 |
| #' Simplified loading and installing of packages | |
| #' | |
| #' This code is taken and modified from jbryer (https://gist.github.com/jbryer/9112634) | |
| #' | |
| #' This is a wrapper to \code{\link{require}} and \code{\link{install.packages}}. | |
| #' Specifically, this will first try to load the package(s) and if not found | |
| #' it will install then load the packages. Additionally, if the | |
| #' \code{update=TRUE} parameter is specified it will check the currently | |
| #' installed package version with what is available on CRAN (or mirror) and | |
| #' install the newer version. |