jlanej

#!/bin/bash

mkdir new_frames
cp IMG_2985.JPG new_frames/previous.jpg
cd new_frames
counter=0
for f in ../IMG_*.JPG
do
	for i in {0..20}
	do

jlanej

*bcftools filter
*Filter variants per region (in this example, print out only variants mapped to chr1 and chr2)
qbcftools filter -r1,2 ALL.chip.omni_broad_sanger_combined.20140818.snps.genotypes.hg38.vcf.gz

*printing out info for only 2 samples:
bcftools view -s NA20818,NA20819 filename.vcf.gz

*printing stats only for variants passing the filter:
bcftools view -f PASS filename.vcf.gz

jlanej

#!/usr/bin/env bash

help() {
	if [[ ! -z "$1" ]]
	then 
		echo "Error: $1"
		trap 'exit 1' RETURN
	fi
	cat <<EOF

jlanej

#!/usr/bin/env bash

help() {
	if [[ ! -z "$1" ]]
	then 
		echo "Error: $1"
		trap 'exit 1' RETURN
	fi
	cat <<EOF

jlanej

#cleanup
outDir="/scratch.global/lanej/aric_raw/fullSraPipeline/"

#rm -r $outDir"bams"
#rm -r $outDir"completes"
#rm -r $outDir"unmapped"
#rm -r $outDir"telseq"
rm -r $outDir"process"
#rm -r $outDir"mtDNACN"
rm -r $outDir"batches"

jlanej

package main

import (
	"fmt"
	"net/http"
	"time"
)

var urls = []string{
	"http://pulsoconf.co/",

jlanej

package markerMaker

import (
	"encoding/json"
	"html/template"
	"net/http"
	"strings"

	"appengine"
	"appengine/datastore"

jlanej

Keybase proof

I hereby claim:

• I am jlanej on github.
• I am jlanej (https://keybase.io/jlanej) on keybase.
• I have a public key ASB041MUDsCLDdzig_W57Ptk_-Nq_kObMoRg3pZXQ5sRowo

To claim this, I am signing this object:

jlanej

// Use Gists to store code you would like to remember later on
console.log(window); // log the "window" object to the console