jmuhlich

-- See this document for more information on making Pong:
-- http://elm-lang.org/blog/Pong.elm
-- 
-- Make the Pong field look nicer. Add a line (or dotted line) at mid-field.

import Keyboard
import Text
import Window

-- Inputs

jmuhlich

import Mouse
import Graphics.Input (Input, input, hoverable)
 
type SliderInput = { mouseX:Int, mouseY:Int, mouseDown:Bool }
sliderInput = SliderInput <~ Mouse.x
                           ~ Mouse.y
                           ~ Mouse.isDown
 
type Slider = { value:Int, isMoving:Bool }
defaultSlider : Slider

jmuhlich

import String
import Array
import Graphics.Input (Input, input)
import Graphics.Input.Field as Field

logistic : Float -> Float -> Float -> Float -> Float -> Float
logistic x emin emax mid slope =
  ( (emin-emax) / (1 + ((x/mid)^slope) ) ) + emax

lcurve : Float -> Float -> Float -> Path

jmuhlich

# Hacks to get line_profiler to profile top-level code in a script/module.

# 1. The interface only allows profiling functions, but the core profiling logic
# actually works directly with code objects. We create a new function object
# from the code at the top level of the script to profile, and call
# profile.add_function on it. This is enough to trick the bookkeeping code in
# line_profiler to include the top-level code.

# 2. Even though the entirety of the top-level code is profiled in full, the
# results printer will stop at the first function definition, class definition,

jmuhlich

from pysb import *

Model()

Monomer('Glucose')
Monomer('Vp')

Parameter('kf', .015)
Parameter('kr', .015)
Parameter('Vsk', -18)

jmuhlich

Instructions for running StarCluster on EC2 instances

Install StarCluster locally

• See documentation at http://star.mit.edu/cluster/docs/latest/installation.html
• pip install StarCluster

jmuhlich

import logging

logger = logging.getLogger(__name__)

def foo(a, b):
    logger.info('foo(%s, %s)', a, b)

jmuhlich

from sqlalchemy.ext.declarative import declarative_base
from sqlalchemy.orm import (relationship, sessionmaker, subqueryload,
                            with_polymorphic)
from sqlalchemy import create_engine, Column, String, Integer
from sqlalchemy.schema import ForeignKey

Base = declarative_base()


class A(Base):

jmuhlich

import jaydebeapi
import pandas as pd

def cursor_to_df(cursor):
    df = pd.DataFrame(cursor.fetchall())
    df.columns = [d[0] for d in cursor.description]
    return df

fmsHostname = 'fmprod13.med.harvard.edu'
fmFilename = 'HITS_Reagent_Tracker_2_0'

jmuhlich