Skip to content

Instantly share code, notes, and snippets.

@junaruga

junaruga/nextflow-run-nanoseq-test-docker5.log

Created November 6, 2020 16:32
Show Gist options
  • Save junaruga/40ccb74fc94da27d046c25136f53b78f to your computer and use it in GitHub Desktop.
Save junaruga/40ccb74fc94da27d046c25136f53b78f to your computer and use it in GitHub Desktop.
Download ZIP
Raw
nextflow-run-nanoseq-test-docker5.log
$ nextflow pull nf-core/nanoseq
Checking nf-core/nanoseq ...
Fast-forward - revision: ad5b2bb7a3 [master]
$ git clean -fdx
$ docker system prune -a -f
$ nextflow run nf-core/nanoseq -profile test,docker 2>&1 | tee nextflow-run-nanoseq-test-docker5.log
$ cat nextflow-run-nanoseq-test-docker5.log
N E X T F L O W ~ version 20.07.1
Launching `nf-core/nanoseq` [hungry_meninsky] - revision: ad5b2bb7a3 [master]
[- ] process > GET_TEST_DATA -
[- ] process > CHECK_SAMPLESHEET -
----------------------------------------------------
,--./,-.
___ __ __ __ ___ /,-._.--~'
|\ | |__ __ / ` / \ |__) |__ } {
| \| | \__, \__/ | \ |___ \`-._,-`-,
`._,._,'
nf-core/nanoseq v1.1.0
----------------------------------------------------
Pipeline Release : master
Run Name : hungry_meninsky
Samplesheet : https://raw.githubusercontent.com/nf-core/test-datasets/nanoseq/samplesheet_bc_dx.csv
Protocol : cDNA
Stranded : No
Skip Basecalling : No
Skip Demultiplexing : No
Run Dir : https://raw.githubusercontent.com/nf-core/test-datasets/nanoseq/fast5/barcoded/
Flowcell ID : FLO-MIN106
Kit ID : SQK-DCS109
Barcode Kit ID : EXP-NBD103
Barcode Both Ends : No
Guppy Config File : Unspecified
Guppy Model File : Unspecified
Guppy GPU Mode : No
Guppy GPU Runners : 6
Guppy CPU Threads : 1
Guppy GPU Device : auto
Guppy GPU Options : Unspecified
Aligner : minimap2
Save Intermeds : No
Max Resources : 6 GB memory, 2 cpus, 12h time per job
Container : docker - nfcore/nanoseq:1.1.0
Output dir : ./results
Launch dir : /home/jaruga/git/nf-core/nanoseq
Working dir : /home/jaruga/git/nf-core/nanoseq/work
Script dir : /home/jaruga/.nextflow/assets/nf-core/nanoseq
User : jaruga
Config Profile : test,docker
Config Profile Description: Minimal test dataset to check pipeline function
Config Files : /home/jaruga/.nextflow/assets/nf-core/nanoseq/nextflow.config, /home/jaruga/git/nf-core/nanoseq/nextflow.config
----------------------------------------------------
executor > local (1)
[59/860039] process > GET_TEST_DATA [ 0%] 0 of 1
[- ] process > CHECK_SAMPLESHEET -
[- ] process > GUPPY -
[- ] process > PYCOQC -
[- ] process > NANOPLOT_SUMMARY -
[- ] process > NANOPLOT_FASTQ -
[- ] process > FASTQC -
[- ] process > GET_CHROM_SIZES -
[- ] process > GTF_TO_BED -
[- ] process > MINIMAP2_INDEX -
----------------------------------------------------
,--./,-.
___ __ __ __ ___ /,-._.--~'
|\ | |__ __ / ` / \ |__) |__ } {
| \| | \__, \__/ | \ |___ \`-._,-`-,
`._,._,'
nf-core/nanoseq v1.1.0
----------------------------------------------------
Pipeline Release : master
Run Name : hungry_meninsky
Samplesheet : https://raw.githubusercontent.com/nf-core/test-datasets/nanoseq/samplesheet_bc_dx.csv
Protocol : cDNA
Stranded : No
Skip Basecalling : No
Skip Demultiplexing : No
Run Dir : https://raw.githubusercontent.com/nf-core/test-datasets/nanoseq/fast5/barcoded/
Flowcell ID : FLO-MIN106
Kit ID : SQK-DCS109
Barcode Kit ID : EXP-NBD103
Barcode Both Ends : No
Guppy Config File : Unspecified
Guppy Model File : Unspecified
Guppy GPU Mode : No
Guppy GPU Runners : 6
Guppy CPU Threads : 1
Guppy GPU Device : auto
Guppy GPU Options : Unspecified
Aligner : minimap2
Save Intermeds : No
Max Resources : 6 GB memory, 2 cpus, 12h time per job
Container : docker - nfcore/nanoseq:1.1.0
Output dir : ./results
Launch dir : /home/jaruga/git/nf-core/nanoseq
Working dir : /home/jaruga/git/nf-core/nanoseq/work
Script dir : /home/jaruga/.nextflow/assets/nf-core/nanoseq
User : jaruga
Config Profile : test,docker
Config Profile Description: Minimal test dataset to check pipeline function
Config Files : /home/jaruga/.nextflow/assets/nf-core/nanoseq/nextflow.config, /home/jaruga/git/nf-core/nanoseq/nextflow.config
----------------------------------------------------
executor > local (2)
[59/860039] process > GET_TEST_DATA [ 0%] 0 of 1
[- ] process > CHECK_SAMPLESHEET [ 0%] 0 of 1
[- ] process > GUPPY -
[- ] process > PYCOQC -
[- ] process > NANOPLOT_SUMMARY -
[- ] process > NANOPLOT_FASTQ -
[- ] process > FASTQC -
[- ] process > GET_CHROM_SIZES -
[- ] process > GTF_TO_BED -
[- ] process > MINIMAP2_INDEX -
[- ] process > MINIMAP2_ALIGN -
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [ 0%] 0 of 1
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
----------------------------------------------------
,--./,-.
___ __ __ __ ___ /,-._.--~'
|\ | |__ __ / ` / \ |__) |__ } {
| \| | \__, \__/ | \ |___ \`-._,-`-,
`._,._,'
nf-core/nanoseq v1.1.0
----------------------------------------------------
Pipeline Release : master
Run Name : hungry_meninsky
Samplesheet : https://raw.githubusercontent.com/nf-core/test-datasets/nanoseq/samplesheet_bc_dx.csv
Protocol : cDNA
Stranded : No
Skip Basecalling : No
Skip Demultiplexing : No
Run Dir : https://raw.githubusercontent.com/nf-core/test-datasets/nanoseq/fast5/barcoded/
Flowcell ID : FLO-MIN106
Kit ID : SQK-DCS109
Barcode Kit ID : EXP-NBD103
Barcode Both Ends : No
Guppy Config File : Unspecified
Guppy Model File : Unspecified
Guppy GPU Mode : No
Guppy GPU Runners : 6
Guppy CPU Threads : 1
Guppy GPU Device : auto
Guppy GPU Options : Unspecified
Aligner : minimap2
Save Intermeds : No
Max Resources : 6 GB memory, 2 cpus, 12h time per job
Container : docker - nfcore/nanoseq:1.1.0
Output dir : ./results
Launch dir : /home/jaruga/git/nf-core/nanoseq
Working dir : /home/jaruga/git/nf-core/nanoseq/work
Script dir : /home/jaruga/.nextflow/assets/nf-core/nanoseq
User : jaruga
Config Profile : test,docker
Config Profile Description: Minimal test dataset to check pipeline function
Config Files : /home/jaruga/.nextflow/assets/nf-core/nanoseq/nextflow.config, /home/jaruga/git/nf-core/nanoseq/nextflow.config
----------------------------------------------------
executor > local (3)
[59/860039] process > GET_TEST_DATA [ 0%] 0 of 1
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [ 0%] 0 of 1
[- ] process > GUPPY -
[- ] process > PYCOQC -
[- ] process > NANOPLOT_SUMMARY -
[- ] process > NANOPLOT_FASTQ -
[- ] process > FASTQC -
[- ] process > GET_CHROM_SIZES -
[- ] process > GTF_TO_BED -
[- ] process > MINIMAP2_INDEX -
[- ] process > MINIMAP2_ALIGN -
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (3)
[59/860039] process > GET_TEST_DATA [ 0%] 0 of 1
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[- ] process > GUPPY -
[- ] process > PYCOQC -
[- ] process > NANOPLOT_SUMMARY -
[- ] process > NANOPLOT_FASTQ -
[- ] process > FASTQC -
[- ] process > GET_CHROM_SIZES -
[- ] process > GTF_TO_BED -
[- ] process > MINIMAP2_INDEX -
[- ] process > MINIMAP2_ALIGN -
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (4)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [ 0%] 0 of 1
[- ] process > PYCOQC -
[- ] process > NANOPLOT_SUMMARY -
[- ] process > NANOPLOT_FASTQ -
[- ] process > FASTQC -
[- ] process > GET_CHROM_SIZES -
[- ] process > GTF_TO_BED -
[- ] process > MINIMAP2_INDEX -
[- ] process > MINIMAP2_ALIGN -
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (6)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [ 0%] 0 of 1
[- ] process > NANOPLOT_FASTQ [ 0%] 0 of 3
[- ] process > FASTQC [ 0%] 0 of 3
[- ] process > GET_CHROM_SIZES -
[- ] process > GTF_TO_BED -
[- ] process > MINIMAP2_INDEX -
[- ] process > MINIMAP2_ALIGN -
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (6)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [ 0%] 0 of 1
[- ] process > NANOPLOT_FASTQ [ 0%] 0 of 3
[- ] process > FASTQC [ 0%] 0 of 3
[- ] process > GET_CHROM_SIZES [ 0%] 0 of 1
[- ] process > GTF_TO_BED -
[- ] process > MINIMAP2_INDEX -
[- ] process > MINIMAP2_ALIGN -
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (7)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[d8/f3a800] process > NANOPLOT_FASTQ (HEPG2_RUN3_R1) [ 0%] 0 of 3
[- ] process > FASTQC [ 0%] 0 of 3
[- ] process > GET_CHROM_SIZES [ 0%] 0 of 1
[- ] process > GTF_TO_BED -
[- ] process > MINIMAP2_INDEX -
[- ] process > MINIMAP2_ALIGN -
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (7)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[d8/f3a800] process > NANOPLOT_FASTQ (HEPG2_RUN3_R1) [ 0%] 0 of 3
[- ] process > FASTQC [ 0%] 0 of 3
[- ] process > GET_CHROM_SIZES [ 0%] 0 of 1
[- ] process > GTF_TO_BED -
[- ] process > MINIMAP2_INDEX -
[- ] process > MINIMAP2_ALIGN -
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (8)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[00/93ae6d] process > NANOPLOT_FASTQ (CALIBRATION_RUN_R1) [ 33%] 1 of 3
[- ] process > FASTQC [ 0%] 0 of 3
[- ] process > GET_CHROM_SIZES [ 0%] 0 of 1
[- ] process > GTF_TO_BED -
[- ] process > MINIMAP2_INDEX -
[- ] process > MINIMAP2_ALIGN -
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (9)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [ 67%] 2 of 3
[- ] process > FASTQC [ 0%] 0 of 3
[- ] process > GET_CHROM_SIZES [ 0%] 0 of 1
[- ] process > GTF_TO_BED -
[- ] process > MINIMAP2_INDEX -
[- ] process > MINIMAP2_ALIGN -
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (10)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[78/2cd7d5] process > FASTQC (K562_RUN1_R1) [ 0%] 0 of 3
[- ] process > GET_CHROM_SIZES [ 0%] 0 of 1
[- ] process > GTF_TO_BED -
[- ] process > MINIMAP2_INDEX -
[- ] process > MINIMAP2_ALIGN -
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (10)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[78/2cd7d5] process > FASTQC (K562_RUN1_R1) [ 0%] 0 of 3
[- ] process > GET_CHROM_SIZES [ 0%] 0 of 1
[- ] process > GTF_TO_BED -
[- ] process > MINIMAP2_INDEX -
[- ] process > MINIMAP2_ALIGN -
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (11)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[9e/184dec] process > FASTQC (CALIBRATION_RUN_R1) [ 33%] 1 of 3
[- ] process > GET_CHROM_SIZES [ 0%] 0 of 1
[- ] process > GTF_TO_BED -
[- ] process > MINIMAP2_INDEX -
[- ] process > MINIMAP2_ALIGN -
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (11)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[9e/184dec] process > FASTQC (CALIBRATION_RUN_R1) [ 33%] 1 of 3
[- ] process > GET_CHROM_SIZES [ 0%] 0 of 1
[- ] process > GTF_TO_BED -
[- ] process > MINIMAP2_INDEX -
[- ] process > MINIMAP2_ALIGN -
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (12)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [ 67%] 2 of 3
[- ] process > GET_CHROM_SIZES [ 0%] 0 of 1
[- ] process > GTF_TO_BED -
[- ] process > MINIMAP2_INDEX -
[- ] process > MINIMAP2_ALIGN -
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (12)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [ 67%] 2 of 3
[- ] process > GET_CHROM_SIZES [ 0%] 0 of 1
[- ] process > GTF_TO_BED -
[- ] process > MINIMAP2_INDEX -
[- ] process > MINIMAP2_ALIGN -
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (13)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [100%] 3 of 3 ✔
[ed/92a7f9] process > GET_CHROM_SIZES (hg19_KCMF1.fa) [ 0%] 0 of 1
[- ] process > GTF_TO_BED -
[- ] process > MINIMAP2_INDEX -
[- ] process > MINIMAP2_ALIGN -
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (13)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [100%] 3 of 3 ✔
[ed/92a7f9] process > GET_CHROM_SIZES (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[- ] process > GTF_TO_BED -
[- ] process > MINIMAP2_INDEX -
[- ] process > MINIMAP2_ALIGN -
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (14)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [100%] 3 of 3 ✔
[ed/92a7f9] process > GET_CHROM_SIZES (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[- ] process > GTF_TO_BED -
[f8/d9cc3b] process > MINIMAP2_INDEX (hg19_KCMF1.fa) [ 0%] 0 of 1
[- ] process > MINIMAP2_ALIGN -
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (15)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [100%] 3 of 3 ✔
[ed/92a7f9] process > GET_CHROM_SIZES (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[- ] process > GTF_TO_BED -
[f8/d9cc3b] process > MINIMAP2_INDEX (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[87/6c5a52] process > MINIMAP2_ALIGN (K562_RUN1_R1) [ 0%] 0 of 1
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (15)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [100%] 3 of 3 ✔
[ed/92a7f9] process > GET_CHROM_SIZES (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[- ] process > GTF_TO_BED -
[f8/d9cc3b] process > MINIMAP2_INDEX (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[87/6c5a52] process > MINIMAP2_ALIGN (K562_RUN1_R1) [ 0%] 0 of 1
[- ] process > SAMTOOLS_SORT -
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (16)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [100%] 3 of 3 ✔
[ed/92a7f9] process > GET_CHROM_SIZES (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[- ] process > GTF_TO_BED -
[f8/d9cc3b] process > MINIMAP2_INDEX (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[87/6c5a52] process > MINIMAP2_ALIGN (K562_RUN1_R1) [100%] 1 of 1 ✔
[eb/9ca46f] process > SAMTOOLS_SORT (K562_RUN1_R1) [ 0%] 0 of 1
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (16)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [100%] 3 of 3 ✔
[ed/92a7f9] process > GET_CHROM_SIZES (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[- ] process > GTF_TO_BED -
[f8/d9cc3b] process > MINIMAP2_INDEX (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[87/6c5a52] process > MINIMAP2_ALIGN (K562_RUN1_R1) [100%] 1 of 1 ✔
[eb/9ca46f] process > SAMTOOLS_SORT (K562_RUN1_R1) [ 0%] 0 of 1
[- ] process > BEDTOOLS_GENOMECOV -
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[- ] process > BEDTOOLS_BAMTOBED -
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (17)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [100%] 3 of 3 ✔
[ed/92a7f9] process > GET_CHROM_SIZES (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[- ] process > GTF_TO_BED -
[f8/d9cc3b] process > MINIMAP2_INDEX (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[87/6c5a52] process > MINIMAP2_ALIGN (K562_RUN1_R1) [100%] 1 of 1 ✔
[eb/9ca46f] process > SAMTOOLS_SORT (K562_RUN1_R1) [100%] 1 of 1 ✔
[- ] process > BEDTOOLS_GENOMECOV [ 0%] 0 of 1
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[fd/ab8096] process > BEDTOOLS_BAMTOBED (K562_RUN1_R1) [ 0%] 0 of 1
[- ] process > UCSC_BED12TOBIGBED -
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (18)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [100%] 3 of 3 ✔
[ed/92a7f9] process > GET_CHROM_SIZES (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[- ] process > GTF_TO_BED -
[f8/d9cc3b] process > MINIMAP2_INDEX (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[87/6c5a52] process > MINIMAP2_ALIGN (K562_RUN1_R1) [100%] 1 of 1 ✔
[eb/9ca46f] process > SAMTOOLS_SORT (K562_RUN1_R1) [100%] 1 of 1 ✔
[88/bbe68a] process > BEDTOOLS_GENOMECOV (K562_RUN1_R1) [ 0%] 0 of 1
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[fd/ab8096] process > BEDTOOLS_BAMTOBED (K562_RUN1_R1) [100%] 1 of 1 ✔
[- ] process > UCSC_BED12TOBIGBED [ 0%] 0 of 1
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (18)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [100%] 3 of 3 ✔
[ed/92a7f9] process > GET_CHROM_SIZES (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[- ] process > GTF_TO_BED -
[f8/d9cc3b] process > MINIMAP2_INDEX (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[87/6c5a52] process > MINIMAP2_ALIGN (K562_RUN1_R1) [100%] 1 of 1 ✔
[eb/9ca46f] process > SAMTOOLS_SORT (K562_RUN1_R1) [100%] 1 of 1 ✔
[88/bbe68a] process > BEDTOOLS_GENOMECOV (K562_RUN1_R1) [ 0%] 0 of 1
[- ] process > UCSC_BEDGRAPHTOBIGWIG -
[fd/ab8096] process > BEDTOOLS_BAMTOBED (K562_RUN1_R1) [100%] 1 of 1 ✔
[- ] process > UCSC_BED12TOBIGBED [ 0%] 0 of 1
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (19)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [100%] 3 of 3 ✔
[ed/92a7f9] process > GET_CHROM_SIZES (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[- ] process > GTF_TO_BED -
[f8/d9cc3b] process > MINIMAP2_INDEX (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[87/6c5a52] process > MINIMAP2_ALIGN (K562_RUN1_R1) [100%] 1 of 1 ✔
[eb/9ca46f] process > SAMTOOLS_SORT (K562_RUN1_R1) [100%] 1 of 1 ✔
[88/bbe68a] process > BEDTOOLS_GENOMECOV (K562_RUN1_R1) [100%] 1 of 1 ✔
[- ] process > UCSC_BEDGRAPHTOBIGWIG [ 0%] 0 of 1
[fd/ab8096] process > BEDTOOLS_BAMTOBED (K562_RUN1_R1) [100%] 1 of 1 ✔
[9d/0179a7] process > UCSC_BED12TOBIGBED (K562_RUN1_R1) [ 0%] 0 of 1
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (19)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [100%] 3 of 3 ✔
[ed/92a7f9] process > GET_CHROM_SIZES (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[- ] process > GTF_TO_BED -
[f8/d9cc3b] process > MINIMAP2_INDEX (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[87/6c5a52] process > MINIMAP2_ALIGN (K562_RUN1_R1) [100%] 1 of 1 ✔
[eb/9ca46f] process > SAMTOOLS_SORT (K562_RUN1_R1) [100%] 1 of 1 ✔
[88/bbe68a] process > BEDTOOLS_GENOMECOV (K562_RUN1_R1) [100%] 1 of 1 ✔
[- ] process > UCSC_BEDGRAPHTOBIGWIG [ 0%] 0 of 1
[fd/ab8096] process > BEDTOOLS_BAMTOBED (K562_RUN1_R1) [100%] 1 of 1 ✔
[9d/0179a7] process > UCSC_BED12TOBIGBED (K562_RUN1_R1) [ 0%] 0 of 1
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (20)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [100%] 3 of 3 ✔
[ed/92a7f9] process > GET_CHROM_SIZES (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[- ] process > GTF_TO_BED -
[f8/d9cc3b] process > MINIMAP2_INDEX (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[87/6c5a52] process > MINIMAP2_ALIGN (K562_RUN1_R1) [100%] 1 of 1 ✔
[eb/9ca46f] process > SAMTOOLS_SORT (K562_RUN1_R1) [100%] 1 of 1 ✔
[88/bbe68a] process > BEDTOOLS_GENOMECOV (K562_RUN1_R1) [100%] 1 of 1 ✔
[14/228cc5] process > UCSC_BEDGRAPHTOBIGWIG (K562_RUN1_R1) [ 0%] 0 of 1
[fd/ab8096] process > BEDTOOLS_BAMTOBED (K562_RUN1_R1) [100%] 1 of 1 ✔
[9d/0179a7] process > UCSC_BED12TOBIGBED (K562_RUN1_R1) [100%] 1 of 1 ✔
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (20)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [ 0%] 0 of 1
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [100%] 3 of 3 ✔
[ed/92a7f9] process > GET_CHROM_SIZES (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[- ] process > GTF_TO_BED -
[f8/d9cc3b] process > MINIMAP2_INDEX (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[87/6c5a52] process > MINIMAP2_ALIGN (K562_RUN1_R1) [100%] 1 of 1 ✔
[eb/9ca46f] process > SAMTOOLS_SORT (K562_RUN1_R1) [100%] 1 of 1 ✔
[88/bbe68a] process > BEDTOOLS_GENOMECOV (K562_RUN1_R1) [100%] 1 of 1 ✔
[14/228cc5] process > UCSC_BEDGRAPHTOBIGWIG (K562_RUN1_R1) [100%] 1 of 1 ✔
[fd/ab8096] process > BEDTOOLS_BAMTOBED (K562_RUN1_R1) [100%] 1 of 1 ✔
[9d/0179a7] process > UCSC_BED12TOBIGBED (K562_RUN1_R1) [100%] 1 of 1 ✔
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[- ] process > GET_SOFTWARE_VERSIONS -
[- ] process > MULTIQC -
executor > local (21)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [100%] 1 of 1 ✔
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [100%] 3 of 3 ✔
[ed/92a7f9] process > GET_CHROM_SIZES (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[- ] process > GTF_TO_BED -
[f8/d9cc3b] process > MINIMAP2_INDEX (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[87/6c5a52] process > MINIMAP2_ALIGN (K562_RUN1_R1) [100%] 1 of 1 ✔
[eb/9ca46f] process > SAMTOOLS_SORT (K562_RUN1_R1) [100%] 1 of 1 ✔
[88/bbe68a] process > BEDTOOLS_GENOMECOV (K562_RUN1_R1) [100%] 1 of 1 ✔
[14/228cc5] process > UCSC_BEDGRAPHTOBIGWIG (K562_RUN1_R1) [100%] 1 of 1 ✔
[fd/ab8096] process > BEDTOOLS_BAMTOBED (K562_RUN1_R1) [100%] 1 of 1 ✔
[9d/0179a7] process > UCSC_BED12TOBIGBED (K562_RUN1_R1) [100%] 1 of 1 ✔
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[13/88aa73] process > GET_SOFTWARE_VERSIONS [ 0%] 0 of 1
[- ] process > MULTIQC -
executor > local (22)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [100%] 1 of 1 ✔
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [100%] 3 of 3 ✔
[ed/92a7f9] process > GET_CHROM_SIZES (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[- ] process > GTF_TO_BED -
[f8/d9cc3b] process > MINIMAP2_INDEX (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[87/6c5a52] process > MINIMAP2_ALIGN (K562_RUN1_R1) [100%] 1 of 1 ✔
[eb/9ca46f] process > SAMTOOLS_SORT (K562_RUN1_R1) [100%] 1 of 1 ✔
[88/bbe68a] process > BEDTOOLS_GENOMECOV (K562_RUN1_R1) [100%] 1 of 1 ✔
[14/228cc5] process > UCSC_BEDGRAPHTOBIGWIG (K562_RUN1_R1) [100%] 1 of 1 ✔
[fd/ab8096] process > BEDTOOLS_BAMTOBED (K562_RUN1_R1) [100%] 1 of 1 ✔
[9d/0179a7] process > UCSC_BED12TOBIGBED (K562_RUN1_R1) [100%] 1 of 1 ✔
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[13/88aa73] process > GET_SOFTWARE_VERSIONS [100%] 1 of 1 ✔
[d9/788f7f] process > MULTIQC (1) [ 0%] 0 of 1
executor > local (22)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [100%] 1 of 1 ✔
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [100%] 3 of 3 ✔
[ed/92a7f9] process > GET_CHROM_SIZES (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[- ] process > GTF_TO_BED -
[f8/d9cc3b] process > MINIMAP2_INDEX (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[87/6c5a52] process > MINIMAP2_ALIGN (K562_RUN1_R1) [100%] 1 of 1 ✔
[eb/9ca46f] process > SAMTOOLS_SORT (K562_RUN1_R1) [100%] 1 of 1 ✔
[88/bbe68a] process > BEDTOOLS_GENOMECOV (K562_RUN1_R1) [100%] 1 of 1 ✔
[14/228cc5] process > UCSC_BEDGRAPHTOBIGWIG (K562_RUN1_R1) [100%] 1 of 1 ✔
[fd/ab8096] process > BEDTOOLS_BAMTOBED (K562_RUN1_R1) [100%] 1 of 1 ✔
[9d/0179a7] process > UCSC_BED12TOBIGBED (K562_RUN1_R1) [100%] 1 of 1 ✔
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[13/88aa73] process > GET_SOFTWARE_VERSIONS [100%] 1 of 1 ✔
[d9/788f7f] process > MULTIQC (1) [100%] 1 of 1 ✔
executor > local (22)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [100%] 1 of 1 ✔
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [100%] 3 of 3 ✔
[ed/92a7f9] process > GET_CHROM_SIZES (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[- ] process > GTF_TO_BED -
[f8/d9cc3b] process > MINIMAP2_INDEX (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[87/6c5a52] process > MINIMAP2_ALIGN (K562_RUN1_R1) [100%] 1 of 1 ✔
[eb/9ca46f] process > SAMTOOLS_SORT (K562_RUN1_R1) [100%] 1 of 1 ✔
[88/bbe68a] process > BEDTOOLS_GENOMECOV (K562_RUN1_R1) [100%] 1 of 1 ✔
[14/228cc5] process > UCSC_BEDGRAPHTOBIGWIG (K562_RUN1_R1) [100%] 1 of 1 ✔
[fd/ab8096] process > BEDTOOLS_BAMTOBED (K562_RUN1_R1) [100%] 1 of 1 ✔
[9d/0179a7] process > UCSC_BED12TOBIGBED (K562_RUN1_R1) [100%] 1 of 1 ✔
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[13/88aa73] process > GET_SOFTWARE_VERSIONS [100%] 1 of 1 ✔
[d9/788f7f] process > MULTIQC (1) [100%] 1 of 1 ✔
-[nf-core/nanoseq] Pipeline completed successfully-
executor > local (22)
[59/860039] process > GET_TEST_DATA [100%] 1 of 1 ✔
[13/bb4e58] process > CHECK_SAMPLESHEET (samplesheet_bc_dx.csv) [100%] 1 of 1 ✔
[55/37d58a] process > GUPPY (barcoded) [100%] 1 of 1 ✔
[b4/5ab36f] process > PYCOQC (sequencing_summary.txt) [100%] 1 of 1 ✔
[bc/5fe9bf] process > NANOPLOT_SUMMARY (sequencing_summary.txt) [100%] 1 of 1 ✔
[0d/ef8c89] process > NANOPLOT_FASTQ (K562_RUN1_R1) [100%] 3 of 3 ✔
[06/5be15b] process > FASTQC (HEPG2_RUN3_R1) [100%] 3 of 3 ✔
[ed/92a7f9] process > GET_CHROM_SIZES (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[- ] process > GTF_TO_BED -
[f8/d9cc3b] process > MINIMAP2_INDEX (hg19_KCMF1.fa) [100%] 1 of 1 ✔
[87/6c5a52] process > MINIMAP2_ALIGN (K562_RUN1_R1) [100%] 1 of 1 ✔
[eb/9ca46f] process > SAMTOOLS_SORT (K562_RUN1_R1) [100%] 1 of 1 ✔
[88/bbe68a] process > BEDTOOLS_GENOMECOV (K562_RUN1_R1) [100%] 1 of 1 ✔
[14/228cc5] process > UCSC_BEDGRAPHTOBIGWIG (K562_RUN1_R1) [100%] 1 of 1 ✔
[fd/ab8096] process > BEDTOOLS_BAMTOBED (K562_RUN1_R1) [100%] 1 of 1 ✔
[9d/0179a7] process > UCSC_BED12TOBIGBED (K562_RUN1_R1) [100%] 1 of 1 ✔
[45/578976] process > OUTPUT_DOCUMENTATION [100%] 1 of 1 ✔
[13/88aa73] process > GET_SOFTWARE_VERSIONS [100%] 1 of 1 ✔
[d9/788f7f] process > MULTIQC (1) [100%] 1 of 1 ✔
-[nf-core/nanoseq] Pipeline completed successfully-
WARN: To render the execution DAG in the required format it is required to install Graphviz -- See http://www.graphviz.org for more info.
Completed at: 06-Nov-2020 17:27:12
Duration : 18m 53s
CPU hours : 0.3
Succeeded : 22
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment