Created
October 18, 2022 12:45
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| $ pwd | |
| /home/jaruga/tmp/mitohifi | |
| $ ls -lh exampleFiles | |
| total 39M | |
| -rw-r--r--. 1 jaruga jaruga 1 Oct 11 17:17 .gitkeep | |
| -rw-r--r--. 1 jaruga jaruga 15M Oct 11 17:17 ilDeiPorc1.reads.fa | |
| -rw-r--r--. 1 jaruga jaruga 16K Oct 11 17:17 MW539688.1.fasta | |
| -rw-r--r--. 1 jaruga jaruga 33K Oct 11 17:17 MW539688.1.gb | |
| -rw-r--r--. 1 jaruga jaruga 16K Oct 11 17:17 NC_016067.1.fasta | |
| -rw-r--r--. 1 jaruga jaruga 38K Oct 11 17:17 NC_016067.1.gb | |
| -rw-r--r--. 1 jaruga jaruga 24M Oct 11 17:17 test.fa | |
| $ docker run --rm -w /data/ -v /home/jaruga/tmp/mitohifi/exampleFiles/:/data/ -t docker.io/biocontainers/mitohifi:2.2_cv1 mitohifi.py -r /data/ilDeiPorc1.reads.fa -f /data/MW539688.1.fasta -g /data/MW539688.1.gb -t 4 -o 2 | |
| 2022-10-18 11:20:21 [INFO] Welcome to MitoHifi v2. Starting pipeline... | |
| 2022-10-18 11:20:21 [INFO] Length of related mitogenome is: 15354 bp | |
| 2022-10-18 11:20:21 [INFO] Number of genes on related mitogenome: 37 | |
| 2022-10-18 11:20:21 [INFO] Running MitoHifi pipeline in reads mode... | |
| 2022-10-18 11:20:21 [INFO] 1. First we map your Pacbio HiFi reads to the close-related mitogenome | |
| 2022-10-18 11:20:21 [INFO] minimap2 -t 4 --secondary=no -ax map-pb /data/MW539688.1.fasta /data/ilDeiPorc1.reads.fa | samtools view -@ 4 -S -b -F4 -F 0x800 > reads.HiFiMapped.bam | |
| 2022-10-18 11:20:26 [INFO] 2. Now we filter out any mapped reads that are larger than the reference mitogenome to avoid NUMTS | |
| 2022-10-18 11:20:26 [INFO] 2.1 First we convert the mapped reads from BAM to FASTA format: | |
| 2022-10-18 11:20:26 [INFO] samtools fasta reads.HiFiMapped.bam > gbk.HiFiMapped.bam.fasta | |
| 2022-10-18 11:20:26 [INFO] Total number of mapped reads: 1632 | |
| 2022-10-18 11:20:26 [INFO] 2.2 Then we filter reads that are larger than 15354 bp | |
| 2022-10-18 11:20:26 [INFO] Number of filtered reads: 1632 | |
| 2022-10-18 11:20:26 [INFO] 3. Now let's run hifiasm to assemble the mapped and filtered reads! | |
| 2022-10-18 11:20:26 [INFO] hifiasm --primary -t 4 -f 0 -o gbk.HiFiMapped.bam.filtered.assembled gbk.HiFiMapped.bam.filtered.fasta | |
| 2022-10-18 11:22:29 [INFO] 4. Let's run the blast of the contigs versus the close-related mitogenome | |
| 2022-10-18 11:22:29 [INFO] 4.1. Creating BLAST database: | |
| 2022-10-18 11:22:29 [INFO] makeblastdb -in /data/MW539688.1.fasta -dbtype nucl | |
| 2022-10-18 11:22:29 [INFO] Makeblastdb done. | |
| 2022-10-18 11:22:29 [INFO] 4.2. Running blast of contigs against close-related mitogenome: | |
| 2022-10-18 11:22:29 [INFO] blastn -query hifiasm.contigs.fasta -db /data/MW539688.1.fasta -num_threads 4 -out contigs.blastn -outfmt 6 std qlen slen | |
| 2022-10-18 11:22:29 [INFO] Blast done. | |
| 2022-10-18 11:22:29 [INFO] 5. Filtering BLAST output to select target sequences | |
| 2022-10-18 11:22:29 [INFO] Filtering thresholds applied: | |
| 2022-10-18 11:22:29 [INFO] Minimum query percentage = 50 | |
| 2022-10-18 11:22:29 [INFO] Minimum query length = 80% subject length | |
| 2022-10-18 11:22:29 [INFO] Maximum query length = 5 times subject length | |
| 2022-10-18 11:22:29 [INFO] Filtering BLAST finished. A list of the filtered contigs was saved on ./contigs_filtering/contigs_ids.txt file | |
| 2022-10-18 11:22:29 [INFO] 6. Now we are going to circularize, annotate and rotate each filtered contig. Those are potential mitogenome(s). | |
| 2022-10-18 11:22:29 [INFO] Working with contig ptg000043l | |
| 2022-10-18 11:22:29 [INFO] Working with contig ptg000040l | |
| 2022-10-18 11:22:29 [INFO] Working with contig ptg000001l | |
| 2022-10-18 11:22:29 [INFO] Working with contig ptg000074l | |
| 2022-10-18 11:22:29 [INFO] Working with contig ptg000056l | |
| 2022-10-18 11:22:29 [INFO] Working with contig ptg000062l | |
| 2022-10-18 11:22:29 [INFO] Working with contig ptg000041l | |
| 2022-10-18 11:22:29 [INFO] Working with contig ptg000039l | |
| 2022-10-18 11:22:29 [INFO] Started ptg000040l circularization | |
| 2022-10-18 11:22:29 [INFO] Started ptg000043l circularization | |
| 2022-10-18 11:22:29 [INFO] Started ptg000074l circularization | |
| 2022-10-18 11:22:29 [INFO] Started ptg000001l circularization | |
| 2022-10-18 11:22:29 [INFO] Started ptg000056l circularization | |
| 2022-10-18 11:22:29 [INFO] Started ptg000041l circularization | |
| 2022-10-18 11:22:30 [INFO] Started ptg000039l circularization | |
| 2022-10-18 11:22:30 [INFO] Started ptg000062l circularization | |
| 2022-10-18 11:22:30 [INFO] ptg000041l circularization done. Circularization info saved on ./potential_contigs/ptg000041l/ptg000041l.circularisationCheck.txt | |
| 2022-10-18 11:22:30 [INFO] Started ptg000041l (MitoFinder) annotation | |
| 2022-10-18 11:22:30 [INFO] ptg000074l circularization done. Circularization info saved on ./potential_contigs/ptg000074l/ptg000074l.circularisationCheck.txt | |
| 2022-10-18 11:22:30 [INFO] Started ptg000074l (MitoFinder) annotation | |
| 2022-10-18 11:22:30 [INFO] ptg000040l circularization done. Circularization info saved on ./potential_contigs/ptg000040l/ptg000040l.circularisationCheck.txt | |
| 2022-10-18 11:22:30 [INFO] Started ptg000040l (MitoFinder) annotation | |
| 2022-10-18 11:22:30 [INFO] ptg000039l circularization done. Circularization info saved on ./potential_contigs/ptg000039l/ptg000039l.circularisationCheck.txt | |
| 2022-10-18 11:22:30 [INFO] Started ptg000039l (MitoFinder) annotation | |
| 2022-10-18 11:22:30 [INFO] ptg000043l circularization done. Circularization info saved on ./potential_contigs/ptg000043l/ptg000043l.circularisationCheck.txt | |
| 2022-10-18 11:22:30 [INFO] Started ptg000043l (MitoFinder) annotation | |
| 2022-10-18 11:22:30 [INFO] ptg000056l circularization done. Circularization info saved on ./potential_contigs/ptg000056l/ptg000056l.circularisationCheck.txt | |
| 2022-10-18 11:22:30 [INFO] Started ptg000056l (MitoFinder) annotation | |
| 2022-10-18 11:22:30 [INFO] ptg000062l circularization done. Circularization info saved on ./potential_contigs/ptg000062l/ptg000062l.circularisationCheck.txt | |
| 2022-10-18 11:22:30 [INFO] Started ptg000062l (MitoFinder) annotation | |
| 2022-10-18 11:22:30 [INFO] ptg000001l circularization done. Circularization info saved on ./potential_contigs/ptg000001l/ptg000001l.circularisationCheck.txt | |
| 2022-10-18 11:22:30 [INFO] Started ptg000001l (MitoFinder) annotation | |
| 2022-10-18 11:27:07 [INFO] ptg000043l annotation done. Annotation log saved on ./potential_contigs/ptg000043l/ptg000043l.annotation_MitoFinder.log | |
| 2022-10-18 11:27:07 [INFO] Working with contig ptg000073l | |
| 2022-10-18 11:27:07 [INFO] Started ptg000073l circularization | |
| 2022-10-18 11:27:07 [INFO] ptg000073l circularization done. Circularization info saved on ./potential_contigs/ptg000073l/ptg000073l.circularisationCheck.txt | |
| 2022-10-18 11:27:07 [INFO] Started ptg000073l (MitoFinder) annotation | |
| 2022-10-18 11:27:08 [INFO] ptg000056l annotation done. Annotation log saved on ./potential_contigs/ptg000056l/ptg000056l.annotation_MitoFinder.log | |
| 2022-10-18 11:27:08 [INFO] Working with contig ptg000024l | |
| 2022-10-18 11:27:08 [INFO] Started ptg000024l circularization | |
| 2022-10-18 11:27:08 [INFO] ptg000024l circularization done. Circularization info saved on ./potential_contigs/ptg000024l/ptg000024l.circularisationCheck.txt | |
| 2022-10-18 11:27:08 [INFO] Started ptg000024l (MitoFinder) annotation | |
| 2022-10-18 11:27:09 [INFO] ptg000041l annotation done. Annotation log saved on ./potential_contigs/ptg000041l/ptg000041l.annotation_MitoFinder.log | |
| 2022-10-18 11:27:09 [INFO] Working with contig ptg000013l | |
| 2022-10-18 11:27:09 [INFO] Started ptg000013l circularization | |
| 2022-10-18 11:27:09 [INFO] ptg000074l annotation done. Annotation log saved on ./potential_contigs/ptg000074l/ptg000074l.annotation_MitoFinder.log | |
| 2022-10-18 11:27:09 [INFO] Working with contig ptg000020l | |
| 2022-10-18 11:27:09 [INFO] Started ptg000020l circularization | |
| 2022-10-18 11:27:09 [INFO] ptg000013l circularization done. Circularization info saved on ./potential_contigs/ptg000013l/ptg000013l.circularisationCheck.txt | |
| 2022-10-18 11:27:09 [INFO] Started ptg000013l (MitoFinder) annotation | |
| 2022-10-18 11:27:09 [INFO] ptg000020l circularization done. Circularization info saved on ./potential_contigs/ptg000020l/ptg000020l.circularisationCheck.txt | |
| 2022-10-18 11:27:09 [INFO] Started ptg000020l (MitoFinder) annotation | |
| 2022-10-18 11:27:10 [INFO] ptg000039l annotation done. Annotation log saved on ./potential_contigs/ptg000039l/ptg000039l.annotation_MitoFinder.log | |
| 2022-10-18 11:27:10 [INFO] Working with contig ptg000064l | |
| 2022-10-18 11:27:10 [INFO] Started ptg000064l circularization | |
| 2022-10-18 11:27:11 [INFO] ptg000064l circularization done. Circularization info saved on ./potential_contigs/ptg000064l/ptg000064l.circularisationCheck.txt | |
| 2022-10-18 11:27:11 [INFO] Started ptg000064l (MitoFinder) annotation | |
| 2022-10-18 11:27:11 [INFO] ptg000001l annotation done. Annotation log saved on ./potential_contigs/ptg000001l/ptg000001l.annotation_MitoFinder.log | |
| 2022-10-18 11:27:11 [INFO] Working with contig ptg000059l | |
| 2022-10-18 11:27:11 [INFO] Started ptg000059l circularization | |
| 2022-10-18 11:27:11 [INFO] ptg000040l annotation done. Annotation log saved on ./potential_contigs/ptg000040l/ptg000040l.annotation_MitoFinder.log | |
| 2022-10-18 11:27:11 [INFO] Working with contig ptg000071l | |
| 2022-10-18 11:27:11 [INFO] Started ptg000071l circularization | |
| 2022-10-18 11:27:11 [INFO] ptg000062l annotation done. Annotation log saved on ./potential_contigs/ptg000062l/ptg000062l.annotation_MitoFinder.log | |
| 2022-10-18 11:27:11 [INFO] Working with contig ptg000042l | |
| 2022-10-18 11:27:11 [INFO] Started ptg000042l circularization | |
| 2022-10-18 11:27:11 [INFO] ptg000059l circularization done. Circularization info saved on ./potential_contigs/ptg000059l/ptg000059l.circularisationCheck.txt | |
| 2022-10-18 11:27:11 [INFO] Started ptg000059l (MitoFinder) annotation | |
| 2022-10-18 11:27:11 [INFO] ptg000071l circularization done. Circularization info saved on ./potential_contigs/ptg000071l/ptg000071l.circularisationCheck.txt | |
| 2022-10-18 11:27:11 [INFO] Started ptg000071l (MitoFinder) annotation | |
| 2022-10-18 11:27:11 [INFO] ptg000042l circularization done. Circularization info saved on ./potential_contigs/ptg000042l/ptg000042l.circularisationCheck.txt | |
| 2022-10-18 11:27:11 [INFO] Started ptg000042l (MitoFinder) annotation | |
| 2022-10-18 11:31:49 [INFO] ptg000020l annotation done. Annotation log saved on ./potential_contigs/ptg000020l/ptg000020l.annotation_MitoFinder.log | |
| 2022-10-18 11:31:49 [INFO] Working with contig ptg000055l | |
| 2022-10-18 11:31:49 [INFO] Started ptg000055l circularization | |
| 2022-10-18 11:31:50 [INFO] ptg000055l circularization done. Circularization info saved on ./potential_contigs/ptg000055l/ptg000055l.circularisationCheck.txt | |
| 2022-10-18 11:31:50 [INFO] Started ptg000055l (MitoFinder) annotation | |
| 2022-10-18 11:31:50 [INFO] ptg000073l annotation done. Annotation log saved on ./potential_contigs/ptg000073l/ptg000073l.annotation_MitoFinder.log | |
| 2022-10-18 11:31:50 [INFO] Working with contig ptg000029l | |
| 2022-10-18 11:31:50 [INFO] Started ptg000029l circularization | |
| 2022-10-18 11:31:50 [INFO] ptg000029l circularization done. Circularization info saved on ./potential_contigs/ptg000029l/ptg000029l.circularisationCheck.txt | |
| 2022-10-18 11:31:50 [INFO] Started ptg000029l (MitoFinder) annotation | |
| 2022-10-18 11:31:51 [INFO] ptg000024l annotation done. Annotation log saved on ./potential_contigs/ptg000024l/ptg000024l.annotation_MitoFinder.log | |
| 2022-10-18 11:31:51 [INFO] Working with contig ptg000079l | |
| 2022-10-18 11:31:51 [INFO] Started ptg000079l circularization | |
| 2022-10-18 11:31:51 [INFO] ptg000079l circularization done. Circularization info saved on ./potential_contigs/ptg000079l/ptg000079l.circularisationCheck.txt | |
| 2022-10-18 11:31:51 [INFO] Started ptg000079l (MitoFinder) annotation | |
| 2022-10-18 11:31:52 [INFO] ptg000013l annotation done. Annotation log saved on ./potential_contigs/ptg000013l/ptg000013l.annotation_MitoFinder.log | |
| 2022-10-18 11:31:52 [INFO] Working with contig ptg000044l | |
| 2022-10-18 11:31:52 [INFO] Started ptg000044l circularization | |
| 2022-10-18 11:31:52 [INFO] ptg000044l circularization done. Circularization info saved on ./potential_contigs/ptg000044l/ptg000044l.circularisationCheck.txt | |
| 2022-10-18 11:31:52 [INFO] Started ptg000044l (MitoFinder) annotation | |
| 2022-10-18 11:31:53 [INFO] ptg000059l annotation done. Annotation log saved on ./potential_contigs/ptg000059l/ptg000059l.annotation_MitoFinder.log | |
| 2022-10-18 11:31:53 [INFO] Working with contig ptg000007l | |
| 2022-10-18 11:31:53 [INFO] Started ptg000007l circularization | |
| 2022-10-18 11:31:54 [INFO] ptg000007l circularization done. Circularization info saved on ./potential_contigs/ptg000007l/ptg000007l.circularisationCheck.txt | |
| 2022-10-18 11:31:54 [INFO] Started ptg000007l (MitoFinder) annotation | |
| 2022-10-18 11:31:54 [INFO] ptg000071l annotation done. Annotation log saved on ./potential_contigs/ptg000071l/ptg000071l.annotation_MitoFinder.log | |
| 2022-10-18 11:31:54 [INFO] Working with contig ptg000077l | |
| 2022-10-18 11:31:54 [INFO] Started ptg000077l circularization | |
| 2022-10-18 11:31:55 [INFO] ptg000077l circularization done. Circularization info saved on ./potential_contigs/ptg000077l/ptg000077l.circularisationCheck.txt | |
| 2022-10-18 11:31:55 [INFO] Started ptg000077l (MitoFinder) annotation | |
| 2022-10-18 11:31:55 [INFO] ptg000064l annotation done. Annotation log saved on ./potential_contigs/ptg000064l/ptg000064l.annotation_MitoFinder.log | |
| 2022-10-18 11:31:55 [INFO] Working with contig ptg000034l | |
| 2022-10-18 11:31:55 [INFO] Started ptg000034l circularization | |
| 2022-10-18 11:31:55 [INFO] ptg000034l circularization done. Circularization info saved on ./potential_contigs/ptg000034l/ptg000034l.circularisationCheck.txt | |
| 2022-10-18 11:31:55 [INFO] Started ptg000034l (MitoFinder) annotation | |
| 2022-10-18 11:31:59 [INFO] ptg000042l annotation done. Annotation log saved on ./potential_contigs/ptg000042l/ptg000042l.annotation_MitoFinder.log | |
| 2022-10-18 11:31:59 [INFO] Working with contig ptg000070l | |
| 2022-10-18 11:31:59 [INFO] Started ptg000070l circularization | |
| 2022-10-18 11:31:59 [INFO] ptg000070l circularization done. Circularization info saved on ./potential_contigs/ptg000070l/ptg000070l.circularisationCheck.txt | |
| 2022-10-18 11:31:59 [INFO] Started ptg000070l (MitoFinder) annotation | |
| 2022-10-18 11:36:32 [INFO] ptg000055l annotation done. Annotation log saved on ./potential_contigs/ptg000055l/ptg000055l.annotation_MitoFinder.log | |
| 2022-10-18 11:36:32 [INFO] Working with contig ptg000072l | |
| 2022-10-18 11:36:32 [INFO] Started ptg000072l circularization | |
| 2022-10-18 11:36:32 [INFO] ptg000072l circularization done. Circularization info saved on ./potential_contigs/ptg000072l/ptg000072l.circularisationCheck.txt | |
| 2022-10-18 11:36:32 [INFO] Started ptg000072l (MitoFinder) annotation | |
| 2022-10-18 11:36:37 [INFO] ptg000079l annotation done. Annotation log saved on ./potential_contigs/ptg000079l/ptg000079l.annotation_MitoFinder.log | |
| 2022-10-18 11:36:37 [INFO] Working with contig ptg000003l | |
| 2022-10-18 11:36:37 [INFO] Started ptg000003l circularization | |
| 2022-10-18 11:36:37 [INFO] ptg000007l annotation done. Annotation log saved on ./potential_contigs/ptg000007l/ptg000007l.annotation_MitoFinder.log | |
| 2022-10-18 11:36:37 [INFO] Working with contig ptg000017l | |
| 2022-10-18 11:36:37 [INFO] Started ptg000017l circularization | |
| 2022-10-18 11:36:37 [INFO] ptg000003l circularization done. Circularization info saved on ./potential_contigs/ptg000003l/ptg000003l.circularisationCheck.txt | |
| 2022-10-18 11:36:37 [INFO] Started ptg000003l (MitoFinder) annotation | |
| 2022-10-18 11:36:37 [INFO] ptg000029l annotation done. Annotation log saved on ./potential_contigs/ptg000029l/ptg000029l.annotation_MitoFinder.log | |
| 2022-10-18 11:36:37 [INFO] Working with contig ptg000048l | |
| 2022-10-18 11:36:37 [INFO] Started ptg000048l circularization | |
| 2022-10-18 11:36:38 [INFO] ptg000048l circularization done. Circularization info saved on ./potential_contigs/ptg000048l/ptg000048l.circularisationCheck.txt | |
| 2022-10-18 11:36:38 [INFO] Started ptg000048l (MitoFinder) annotation | |
| 2022-10-18 11:36:38 [INFO] ptg000017l circularization done. Circularization info saved on ./potential_contigs/ptg000017l/ptg000017l.circularisationCheck.txt | |
| 2022-10-18 11:36:38 [INFO] Started ptg000017l (MitoFinder) annotation | |
| 2022-10-18 11:36:39 [INFO] ptg000034l annotation done. Annotation log saved on ./potential_contigs/ptg000034l/ptg000034l.annotation_MitoFinder.log | |
| 2022-10-18 11:36:39 [INFO] Working with contig ptg000028l | |
| 2022-10-18 11:36:39 [INFO] Started ptg000028l circularization | |
| 2022-10-18 11:36:40 [INFO] ptg000028l circularization done. Circularization info saved on ./potential_contigs/ptg000028l/ptg000028l.circularisationCheck.txt | |
| 2022-10-18 11:36:40 [INFO] Started ptg000028l (MitoFinder) annotation | |
| 2022-10-18 11:36:40 [INFO] ptg000044l annotation done. Annotation log saved on ./potential_contigs/ptg000044l/ptg000044l.annotation_MitoFinder.log | |
| 2022-10-18 11:36:40 [INFO] Working with contig ptg000045l | |
| 2022-10-18 11:36:40 [INFO] Started ptg000045l circularization | |
| 2022-10-18 11:36:41 [INFO] ptg000045l circularization done. Circularization info saved on ./potential_contigs/ptg000045l/ptg000045l.circularisationCheck.txt | |
| 2022-10-18 11:36:41 [INFO] Started ptg000045l (MitoFinder) annotation | |
| 2022-10-18 11:36:42 [INFO] ptg000077l annotation done. Annotation log saved on ./potential_contigs/ptg000077l/ptg000077l.annotation_MitoFinder.log | |
| 2022-10-18 11:36:42 [INFO] Working with contig ptg000012l | |
| 2022-10-18 11:36:42 [INFO] Started ptg000012l circularization | |
| 2022-10-18 11:36:43 [INFO] ptg000012l circularization done. Circularization info saved on ./potential_contigs/ptg000012l/ptg000012l.circularisationCheck.txt | |
| 2022-10-18 11:36:43 [INFO] Started ptg000012l (MitoFinder) annotation | |
| 2022-10-18 11:36:43 [INFO] ptg000070l annotation done. Annotation log saved on ./potential_contigs/ptg000070l/ptg000070l.annotation_MitoFinder.log | |
| 2022-10-18 11:36:43 [INFO] Working with contig ptg000069l | |
| 2022-10-18 11:36:43 [INFO] Started ptg000069l circularization | |
| 2022-10-18 11:36:43 [INFO] ptg000069l circularization done. Circularization info saved on ./potential_contigs/ptg000069l/ptg000069l.circularisationCheck.txt | |
| 2022-10-18 11:36:43 [INFO] Started ptg000069l (MitoFinder) annotation | |
| 2022-10-18 11:41:19 [INFO] ptg000072l annotation done. Annotation log saved on ./potential_contigs/ptg000072l/ptg000072l.annotation_MitoFinder.log | |
| 2022-10-18 11:41:19 [INFO] Working with contig ptg000066l | |
| 2022-10-18 11:41:19 [INFO] Started ptg000066l circularization | |
| 2022-10-18 11:41:19 [INFO] ptg000066l circularization done. Circularization info saved on ./potential_contigs/ptg000066l/ptg000066l.circularisationCheck.txt | |
| 2022-10-18 11:41:19 [INFO] Started ptg000066l (MitoFinder) annotation | |
| 2022-10-18 11:41:22 [INFO] ptg000003l annotation done. Annotation log saved on ./potential_contigs/ptg000003l/ptg000003l.annotation_MitoFinder.log | |
| 2022-10-18 11:41:22 [INFO] Working with contig ptg000038l | |
| 2022-10-18 11:41:22 [INFO] Started ptg000038l circularization | |
| 2022-10-18 11:41:23 [INFO] ptg000038l circularization done. Circularization info saved on ./potential_contigs/ptg000038l/ptg000038l.circularisationCheck.txt | |
| 2022-10-18 11:41:23 [INFO] Started ptg000038l (MitoFinder) annotation | |
| 2022-10-18 11:41:23 [INFO] ptg000048l annotation done. Annotation log saved on ./potential_contigs/ptg000048l/ptg000048l.annotation_MitoFinder.log | |
| 2022-10-18 11:41:24 [INFO] Working with contig ptg000078l | |
| 2022-10-18 11:41:24 [INFO] Started ptg000078l circularization | |
| 2022-10-18 11:41:24 [INFO] ptg000078l circularization done. Circularization info saved on ./potential_contigs/ptg000078l/ptg000078l.circularisationCheck.txt | |
| 2022-10-18 11:41:24 [INFO] Started ptg000078l (MitoFinder) annotation | |
| 2022-10-18 11:41:24 [INFO] ptg000028l annotation done. Annotation log saved on ./potential_contigs/ptg000028l/ptg000028l.annotation_MitoFinder.log | |
| 2022-10-18 11:41:24 [INFO] Working with contig ptg000049l | |
| 2022-10-18 11:41:24 [INFO] Started ptg000049l circularization | |
| 2022-10-18 11:41:24 [INFO] ptg000049l circularization done. Circularization info saved on ./potential_contigs/ptg000049l/ptg000049l.circularisationCheck.txt | |
| 2022-10-18 11:41:24 [INFO] Started ptg000049l (MitoFinder) annotation | |
| 2022-10-18 11:41:24 [INFO] ptg000017l annotation done. Annotation log saved on ./potential_contigs/ptg000017l/ptg000017l.annotation_MitoFinder.log | |
| 2022-10-18 11:41:24 [INFO] Working with contig ptg000010l | |
| 2022-10-18 11:41:24 [INFO] Started ptg000010l circularization | |
| 2022-10-18 11:41:24 [INFO] ptg000010l circularization done. Circularization info saved on ./potential_contigs/ptg000010l/ptg000010l.circularisationCheck.txt | |
| 2022-10-18 11:41:24 [INFO] Started ptg000010l (MitoFinder) annotation | |
| 2022-10-18 11:41:28 [INFO] ptg000069l annotation done. Annotation log saved on ./potential_contigs/ptg000069l/ptg000069l.annotation_MitoFinder.log | |
| 2022-10-18 11:41:28 [INFO] Working with contig ptg000026l | |
| 2022-10-18 11:41:28 [INFO] Started ptg000026l circularization | |
| 2022-10-18 11:41:29 [INFO] ptg000026l circularization done. Circularization info saved on ./potential_contigs/ptg000026l/ptg000026l.circularisationCheck.txt | |
| 2022-10-18 11:41:29 [INFO] Started ptg000026l (MitoFinder) annotation | |
| 2022-10-18 11:41:32 [INFO] ptg000012l annotation done. Annotation log saved on ./potential_contigs/ptg000012l/ptg000012l.annotation_MitoFinder.log | |
| 2022-10-18 11:41:32 [INFO] Working with contig ptg000065l | |
| 2022-10-18 11:41:32 [INFO] Started ptg000065l circularization | |
| 2022-10-18 11:41:32 [INFO] ptg000045l annotation done. Annotation log saved on ./potential_contigs/ptg000045l/ptg000045l.annotation_MitoFinder.log | |
| 2022-10-18 11:41:32 [INFO] Working with contig ptg000008l | |
| 2022-10-18 11:41:32 [INFO] Started ptg000008l circularization | |
| 2022-10-18 11:41:32 [INFO] ptg000065l circularization done. Circularization info saved on ./potential_contigs/ptg000065l/ptg000065l.circularisationCheck.txt | |
| 2022-10-18 11:41:32 [INFO] Started ptg000065l (MitoFinder) annotation | |
| 2022-10-18 11:41:32 [INFO] ptg000008l circularization done. Circularization info saved on ./potential_contigs/ptg000008l/ptg000008l.circularisationCheck.txt | |
| 2022-10-18 11:41:32 [INFO] Started ptg000008l (MitoFinder) annotation | |
| 2022-10-18 11:45:27 [INFO] ptg000049l annotation done. Annotation log saved on ./potential_contigs/ptg000049l/ptg000049l.annotation_MitoFinder.log | |
| 2022-10-18 11:45:27 [INFO] Working with contig ptg000030l | |
| 2022-10-18 11:45:27 [INFO] Started ptg000030l circularization | |
| 2022-10-18 11:45:28 [INFO] ptg000030l circularization done. Circularization info saved on ./potential_contigs/ptg000030l/ptg000030l.circularisationCheck.txt | |
| 2022-10-18 11:45:28 [INFO] Started ptg000030l (MitoFinder) annotation | |
| 2022-10-18 11:45:56 [INFO] ptg000066l annotation done. Annotation log saved on ./potential_contigs/ptg000066l/ptg000066l.annotation_MitoFinder.log | |
| 2022-10-18 11:45:56 [INFO] Working with contig ptg000063l | |
| 2022-10-18 11:45:56 [INFO] Started ptg000063l circularization | |
| 2022-10-18 11:45:57 [INFO] ptg000063l circularization done. Circularization info saved on ./potential_contigs/ptg000063l/ptg000063l.circularisationCheck.txt | |
| 2022-10-18 11:45:57 [INFO] Started ptg000063l (MitoFinder) annotation | |
| 2022-10-18 11:45:58 [INFO] ptg000078l annotation done. Annotation log saved on ./potential_contigs/ptg000078l/ptg000078l.annotation_MitoFinder.log | |
| 2022-10-18 11:45:58 [INFO] Working with contig ptg000037l | |
| 2022-10-18 11:45:58 [INFO] Started ptg000037l circularization | |
| 2022-10-18 11:45:59 [INFO] ptg000037l circularization done. Circularization info saved on ./potential_contigs/ptg000037l/ptg000037l.circularisationCheck.txt | |
| 2022-10-18 11:45:59 [INFO] Started ptg000037l (MitoFinder) annotation | |
| 2022-10-18 11:45:59 [INFO] ptg000038l annotation done. Annotation log saved on ./potential_contigs/ptg000038l/ptg000038l.annotation_MitoFinder.log | |
| 2022-10-18 11:45:59 [INFO] Working with contig ptg000054l | |
| 2022-10-18 11:45:59 [INFO] Started ptg000054l circularization | |
| 2022-10-18 11:45:59 [INFO] ptg000054l circularization done. Circularization info saved on ./potential_contigs/ptg000054l/ptg000054l.circularisationCheck.txt | |
| 2022-10-18 11:45:59 [INFO] Started ptg000054l (MitoFinder) annotation | |
| 2022-10-18 11:46:02 [INFO] ptg000010l annotation done. Annotation log saved on ./potential_contigs/ptg000010l/ptg000010l.annotation_MitoFinder.log | |
| 2022-10-18 11:46:02 [INFO] Working with contig ptg000031l | |
| 2022-10-18 11:46:02 [INFO] Started ptg000031l circularization | |
| 2022-10-18 11:46:02 [INFO] ptg000031l circularization done. Circularization info saved on ./potential_contigs/ptg000031l/ptg000031l.circularisationCheck.txt | |
| 2022-10-18 11:46:02 [INFO] Started ptg000031l (MitoFinder) annotation | |
| 2022-10-18 11:46:03 [INFO] ptg000026l annotation done. Annotation log saved on ./potential_contigs/ptg000026l/ptg000026l.annotation_MitoFinder.log | |
| 2022-10-18 11:46:03 [INFO] Working with contig ptg000004l | |
| 2022-10-18 11:46:03 [INFO] Started ptg000004l circularization | |
| 2022-10-18 11:46:04 [INFO] ptg000004l circularization done. Circularization info saved on ./potential_contigs/ptg000004l/ptg000004l.circularisationCheck.txt | |
| 2022-10-18 11:46:04 [INFO] Started ptg000004l (MitoFinder) annotation | |
| 2022-10-18 11:46:08 [INFO] ptg000065l annotation done. Annotation log saved on ./potential_contigs/ptg000065l/ptg000065l.annotation_MitoFinder.log | |
| 2022-10-18 11:46:08 [INFO] Working with contig ptg000060l | |
| 2022-10-18 11:46:08 [INFO] Started ptg000060l circularization | |
| 2022-10-18 11:46:08 [INFO] ptg000060l circularization done. Circularization info saved on ./potential_contigs/ptg000060l/ptg000060l.circularisationCheck.txt | |
| 2022-10-18 11:46:08 [INFO] Started ptg000060l (MitoFinder) annotation | |
| 2022-10-18 11:46:12 [INFO] ptg000008l annotation done. Annotation log saved on ./potential_contigs/ptg000008l/ptg000008l.annotation_MitoFinder.log | |
| 2022-10-18 11:46:12 [INFO] Working with contig ptg000053l | |
| 2022-10-18 11:46:12 [INFO] Started ptg000053l circularization | |
| 2022-10-18 11:46:12 [INFO] ptg000053l circularization done. Circularization info saved on ./potential_contigs/ptg000053l/ptg000053l.circularisationCheck.txt | |
| 2022-10-18 11:46:12 [INFO] Started ptg000053l (MitoFinder) annotation | |
| 2022-10-18 11:50:14 [INFO] ptg000030l annotation done. Annotation log saved on ./potential_contigs/ptg000030l/ptg000030l.annotation_MitoFinder.log | |
| 2022-10-18 11:50:14 [INFO] Working with contig ptg000023l | |
| 2022-10-18 11:50:14 [INFO] Started ptg000023l circularization | |
| 2022-10-18 11:50:14 [INFO] ptg000023l circularization done. Circularization info saved on ./potential_contigs/ptg000023l/ptg000023l.circularisationCheck.txt | |
| 2022-10-18 11:50:14 [INFO] Started ptg000023l (MitoFinder) annotation | |
| 2022-10-18 11:50:43 [INFO] ptg000054l annotation done. Annotation log saved on ./potential_contigs/ptg000054l/ptg000054l.annotation_MitoFinder.log | |
| 2022-10-18 11:50:43 [INFO] Working with contig ptg000067l | |
| 2022-10-18 11:50:43 [INFO] Started ptg000067l circularization | |
| 2022-10-18 11:50:43 [INFO] ptg000067l circularization done. Circularization info saved on ./potential_contigs/ptg000067l/ptg000067l.circularisationCheck.txt | |
| 2022-10-18 11:50:43 [INFO] Started ptg000067l (MitoFinder) annotation | |
| 2022-10-18 11:50:44 [INFO] ptg000063l annotation done. Annotation log saved on ./potential_contigs/ptg000063l/ptg000063l.annotation_MitoFinder.log | |
| 2022-10-18 11:50:44 [INFO] Working with contig ptg000002l | |
| 2022-10-18 11:50:44 [INFO] Started ptg000002l circularization | |
| 2022-10-18 11:50:44 [INFO] ptg000002l circularization done. Circularization info saved on ./potential_contigs/ptg000002l/ptg000002l.circularisationCheck.txt | |
| 2022-10-18 11:50:44 [INFO] Started ptg000002l (MitoFinder) annotation | |
| 2022-10-18 11:50:45 [INFO] ptg000037l annotation done. Annotation log saved on ./potential_contigs/ptg000037l/ptg000037l.annotation_MitoFinder.log | |
| 2022-10-18 11:50:45 [INFO] Working with contig ptg000068l | |
| 2022-10-18 11:50:45 [INFO] Started ptg000068l circularization | |
| 2022-10-18 11:50:45 [INFO] ptg000031l annotation done. Annotation log saved on ./potential_contigs/ptg000031l/ptg000031l.annotation_MitoFinder.log | |
| 2022-10-18 11:50:45 [INFO] Working with contig ptg000076l | |
| 2022-10-18 11:50:45 [INFO] Started ptg000076l circularization | |
| 2022-10-18 11:50:45 [INFO] ptg000068l circularization done. Circularization info saved on ./potential_contigs/ptg000068l/ptg000068l.circularisationCheck.txt | |
| 2022-10-18 11:50:45 [INFO] Started ptg000068l (MitoFinder) annotation | |
| 2022-10-18 11:50:46 [INFO] ptg000076l circularization done. Circularization info saved on ./potential_contigs/ptg000076l/ptg000076l.circularisationCheck.txt | |
| 2022-10-18 11:50:46 [INFO] Started ptg000076l (MitoFinder) annotation | |
| 2022-10-18 11:50:49 [INFO] ptg000004l annotation done. Annotation log saved on ./potential_contigs/ptg000004l/ptg000004l.annotation_MitoFinder.log | |
| 2022-10-18 11:50:49 [INFO] Working with contig ptg000050l | |
| 2022-10-18 11:50:49 [INFO] Started ptg000050l circularization | |
| 2022-10-18 11:50:50 [INFO] ptg000050l circularization done. Circularization info saved on ./potential_contigs/ptg000050l/ptg000050l.circularisationCheck.txt | |
| 2022-10-18 11:50:50 [INFO] Started ptg000050l (MitoFinder) annotation | |
| 2022-10-18 11:50:52 [INFO] ptg000060l annotation done. Annotation log saved on ./potential_contigs/ptg000060l/ptg000060l.annotation_MitoFinder.log | |
| 2022-10-18 11:50:52 [INFO] Working with contig ptg000022l | |
| 2022-10-18 11:50:52 [INFO] Started ptg000022l circularization | |
| 2022-10-18 11:50:52 [INFO] ptg000022l circularization done. Circularization info saved on ./potential_contigs/ptg000022l/ptg000022l.circularisationCheck.txt | |
| 2022-10-18 11:50:52 [INFO] Started ptg000022l (MitoFinder) annotation | |
| 2022-10-18 11:50:53 [INFO] ptg000053l annotation done. Annotation log saved on ./potential_contigs/ptg000053l/ptg000053l.annotation_MitoFinder.log | |
| 2022-10-18 11:50:53 [INFO] Working with contig ptg000051l | |
| 2022-10-18 11:50:53 [INFO] Started ptg000051l circularization | |
| 2022-10-18 11:50:54 [INFO] ptg000051l circularization done. Circularization info saved on ./potential_contigs/ptg000051l/ptg000051l.circularisationCheck.txt | |
| 2022-10-18 11:50:54 [INFO] Started ptg000051l (MitoFinder) annotation | |
| 2022-10-18 11:54:57 [INFO] ptg000023l annotation done. Annotation log saved on ./potential_contigs/ptg000023l/ptg000023l.annotation_MitoFinder.log | |
| 2022-10-18 11:54:57 [INFO] Working with contig ptg000027l | |
| 2022-10-18 11:54:57 [INFO] Started ptg000027l circularization | |
| 2022-10-18 11:54:58 [INFO] ptg000027l circularization done. Circularization info saved on ./potential_contigs/ptg000027l/ptg000027l.circularisationCheck.txt | |
| 2022-10-18 11:54:58 [INFO] Started ptg000027l (MitoFinder) annotation | |
| 2022-10-18 11:55:25 [INFO] ptg000067l annotation done. Annotation log saved on ./potential_contigs/ptg000067l/ptg000067l.annotation_MitoFinder.log | |
| 2022-10-18 11:55:25 [INFO] Working with contig ptg000015l | |
| 2022-10-18 11:55:25 [INFO] Started ptg000015l circularization | |
| 2022-10-18 11:55:25 [INFO] ptg000002l annotation done. Annotation log saved on ./potential_contigs/ptg000002l/ptg000002l.annotation_MitoFinder.log | |
| 2022-10-18 11:55:25 [INFO] Working with contig ptg000035l | |
| 2022-10-18 11:55:25 [INFO] Started ptg000035l circularization | |
| 2022-10-18 11:55:25 [INFO] ptg000015l circularization done. Circularization info saved on ./potential_contigs/ptg000015l/ptg000015l.circularisationCheck.txt | |
| 2022-10-18 11:55:25 [INFO] Started ptg000015l (MitoFinder) annotation | |
| 2022-10-18 11:55:25 [INFO] ptg000035l circularization done. Circularization info saved on ./potential_contigs/ptg000035l/ptg000035l.circularisationCheck.txt | |
| 2022-10-18 11:55:25 [INFO] Started ptg000035l (MitoFinder) annotation | |
| 2022-10-18 11:55:27 [INFO] ptg000076l annotation done. Annotation log saved on ./potential_contigs/ptg000076l/ptg000076l.annotation_MitoFinder.log | |
| 2022-10-18 11:55:27 [INFO] Working with contig ptg000047l | |
| 2022-10-18 11:55:27 [INFO] Started ptg000047l circularization | |
| 2022-10-18 11:55:28 [INFO] ptg000047l circularization done. Circularization info saved on ./potential_contigs/ptg000047l/ptg000047l.circularisationCheck.txt | |
| 2022-10-18 11:55:28 [INFO] Started ptg000047l (MitoFinder) annotation | |
| 2022-10-18 11:55:28 [INFO] ptg000068l annotation done. Annotation log saved on ./potential_contigs/ptg000068l/ptg000068l.annotation_MitoFinder.log | |
| 2022-10-18 11:55:28 [INFO] Working with contig ptg000016l | |
| 2022-10-18 11:55:28 [INFO] Started ptg000016l circularization | |
| 2022-10-18 11:55:29 [INFO] ptg000016l circularization done. Circularization info saved on ./potential_contigs/ptg000016l/ptg000016l.circularisationCheck.txt | |
| 2022-10-18 11:55:29 [INFO] Started ptg000016l (MitoFinder) annotation | |
| 2022-10-18 11:55:31 [INFO] ptg000050l annotation done. Annotation log saved on ./potential_contigs/ptg000050l/ptg000050l.annotation_MitoFinder.log | |
| 2022-10-18 11:55:31 [INFO] Working with contig ptg000046l | |
| 2022-10-18 11:55:31 [INFO] Started ptg000046l circularization | |
| 2022-10-18 11:55:31 [INFO] ptg000046l circularization done. Circularization info saved on ./potential_contigs/ptg000046l/ptg000046l.circularisationCheck.txt | |
| 2022-10-18 11:55:31 [INFO] Started ptg000046l (MitoFinder) annotation | |
| 2022-10-18 11:55:31 [INFO] ptg000022l annotation done. Annotation log saved on ./potential_contigs/ptg000022l/ptg000022l.annotation_MitoFinder.log | |
| 2022-10-18 11:55:31 [INFO] Working with contig ptg000052l | |
| 2022-10-18 11:55:31 [INFO] Started ptg000052l circularization | |
| 2022-10-18 11:55:31 [INFO] ptg000052l circularization done. Circularization info saved on ./potential_contigs/ptg000052l/ptg000052l.circularisationCheck.txt | |
| 2022-10-18 11:55:31 [INFO] Started ptg000052l (MitoFinder) annotation | |
| 2022-10-18 11:55:34 [INFO] ptg000051l annotation done. Annotation log saved on ./potential_contigs/ptg000051l/ptg000051l.annotation_MitoFinder.log | |
| 2022-10-18 11:55:34 [INFO] Working with contig ptg000057l | |
| 2022-10-18 11:55:34 [INFO] Started ptg000057l circularization | |
| 2022-10-18 11:55:35 [INFO] ptg000057l circularization done. Circularization info saved on ./potential_contigs/ptg000057l/ptg000057l.circularisationCheck.txt | |
| 2022-10-18 11:55:35 [INFO] Started ptg000057l (MitoFinder) annotation | |
| 2022-10-18 11:59:35 [INFO] ptg000027l annotation done. Annotation log saved on ./potential_contigs/ptg000027l/ptg000027l.annotation_MitoFinder.log | |
| 2022-10-18 11:59:35 [INFO] Working with contig ptg000075l | |
| 2022-10-18 11:59:35 [INFO] Started ptg000075l circularization | |
| 2022-10-18 11:59:35 [INFO] ptg000075l circularization done. Circularization info saved on ./potential_contigs/ptg000075l/ptg000075l.circularisationCheck.txt | |
| 2022-10-18 11:59:35 [INFO] Started ptg000075l (MitoFinder) annotation | |
| 2022-10-18 12:00:00 [INFO] ptg000015l annotation done. Annotation log saved on ./potential_contigs/ptg000015l/ptg000015l.annotation_MitoFinder.log | |
| 2022-10-18 12:00:00 [INFO] Working with contig ptg000014l | |
| 2022-10-18 12:00:00 [INFO] Started ptg000014l circularization | |
| 2022-10-18 12:00:01 [INFO] ptg000014l circularization done. Circularization info saved on ./potential_contigs/ptg000014l/ptg000014l.circularisationCheck.txt | |
| 2022-10-18 12:00:01 [INFO] Started ptg000014l (MitoFinder) annotation | |
| 2022-10-18 12:00:02 [INFO] ptg000035l annotation done. Annotation log saved on ./potential_contigs/ptg000035l/ptg000035l.annotation_MitoFinder.log | |
| 2022-10-18 12:00:02 [INFO] Working with contig ptg000011l | |
| 2022-10-18 12:00:02 [INFO] Started ptg000011l circularization | |
| 2022-10-18 12:00:02 [INFO] ptg000011l circularization done. Circularization info saved on ./potential_contigs/ptg000011l/ptg000011l.circularisationCheck.txt | |
| 2022-10-18 12:00:02 [INFO] Started ptg000011l (MitoFinder) annotation | |
| 2022-10-18 12:00:04 [INFO] ptg000016l annotation done. Annotation log saved on ./potential_contigs/ptg000016l/ptg000016l.annotation_MitoFinder.log | |
| 2022-10-18 12:00:04 [INFO] Working with contig ptg000018l | |
| 2022-10-18 12:00:04 [INFO] Started ptg000018l circularization | |
| 2022-10-18 12:00:04 [INFO] ptg000047l annotation done. Annotation log saved on ./potential_contigs/ptg000047l/ptg000047l.annotation_MitoFinder.log | |
| 2022-10-18 12:00:04 [INFO] Working with contig ptg000021l | |
| 2022-10-18 12:00:04 [INFO] Started ptg000021l circularization | |
| 2022-10-18 12:00:04 [INFO] ptg000018l circularization done. Circularization info saved on ./potential_contigs/ptg000018l/ptg000018l.circularisationCheck.txt | |
| 2022-10-18 12:00:04 [INFO] Started ptg000018l (MitoFinder) annotation | |
| 2022-10-18 12:00:05 [INFO] ptg000021l circularization done. Circularization info saved on ./potential_contigs/ptg000021l/ptg000021l.circularisationCheck.txt | |
| 2022-10-18 12:00:05 [INFO] Started ptg000021l (MitoFinder) annotation | |
| 2022-10-18 12:00:06 [INFO] ptg000052l annotation done. Annotation log saved on ./potential_contigs/ptg000052l/ptg000052l.annotation_MitoFinder.log | |
| 2022-10-18 12:00:06 [INFO] Working with contig ptg000032l | |
| 2022-10-18 12:00:06 [INFO] Started ptg000032l circularization | |
| 2022-10-18 12:00:06 [INFO] ptg000032l circularization done. Circularization info saved on ./potential_contigs/ptg000032l/ptg000032l.circularisationCheck.txt | |
| 2022-10-18 12:00:06 [INFO] Started ptg000032l (MitoFinder) annotation | |
| 2022-10-18 12:00:06 [INFO] ptg000046l annotation done. Annotation log saved on ./potential_contigs/ptg000046l/ptg000046l.annotation_MitoFinder.log | |
| 2022-10-18 12:00:06 [INFO] Working with contig ptg000025l | |
| 2022-10-18 12:00:06 [INFO] Started ptg000025l circularization | |
| 2022-10-18 12:00:06 [INFO] ptg000025l circularization done. Circularization info saved on ./potential_contigs/ptg000025l/ptg000025l.circularisationCheck.txt | |
| 2022-10-18 12:00:06 [INFO] Started ptg000025l (MitoFinder) annotation | |
| 2022-10-18 12:00:10 [INFO] ptg000057l annotation done. Annotation log saved on ./potential_contigs/ptg000057l/ptg000057l.annotation_MitoFinder.log | |
| 2022-10-18 12:00:10 [INFO] Working with contig ptg000005l | |
| 2022-10-18 12:00:10 [INFO] Started ptg000005l circularization | |
| 2022-10-18 12:00:10 [INFO] ptg000005l circularization done. Circularization info saved on ./potential_contigs/ptg000005l/ptg000005l.circularisationCheck.txt | |
| 2022-10-18 12:00:10 [INFO] Started ptg000005l (MitoFinder) annotation | |
| 2022-10-18 12:04:16 [INFO] ptg000075l annotation done. Annotation log saved on ./potential_contigs/ptg000075l/ptg000075l.annotation_MitoFinder.log | |
| 2022-10-18 12:04:16 [INFO] Working with contig ptg000061l | |
| 2022-10-18 12:04:16 [INFO] Started ptg000061l circularization | |
| 2022-10-18 12:04:16 [INFO] ptg000061l circularization done. Circularization info saved on ./potential_contigs/ptg000061l/ptg000061l.circularisationCheck.txt | |
| 2022-10-18 12:04:16 [INFO] Started ptg000061l (MitoFinder) annotation | |
| 2022-10-18 12:04:40 [INFO] ptg000014l annotation done. Annotation log saved on ./potential_contigs/ptg000014l/ptg000014l.annotation_MitoFinder.log | |
| 2022-10-18 12:04:40 [INFO] Working with contig ptg000009l | |
| 2022-10-18 12:04:40 [INFO] Started ptg000009l circularization | |
| 2022-10-18 12:04:40 [INFO] ptg000009l circularization done. Circularization info saved on ./potential_contigs/ptg000009l/ptg000009l.circularisationCheck.txt | |
| 2022-10-18 12:04:40 [INFO] Started ptg000009l (MitoFinder) annotation | |
| 2022-10-18 12:04:41 [INFO] ptg000018l annotation done. Annotation log saved on ./potential_contigs/ptg000018l/ptg000018l.annotation_MitoFinder.log | |
| 2022-10-18 12:04:41 [INFO] Working with contig ptg000006l | |
| 2022-10-18 12:04:41 [INFO] Started ptg000006l circularization | |
| 2022-10-18 12:04:41 [INFO] ptg000006l circularization done. Circularization info saved on ./potential_contigs/ptg000006l/ptg000006l.circularisationCheck.txt | |
| 2022-10-18 12:04:41 [INFO] Started ptg000006l (MitoFinder) annotation | |
| 2022-10-18 12:04:43 [INFO] ptg000032l annotation done. Annotation log saved on ./potential_contigs/ptg000032l/ptg000032l.annotation_MitoFinder.log | |
| 2022-10-18 12:04:43 [INFO] Working with contig ptg000058l | |
| 2022-10-18 12:04:43 [INFO] Started ptg000058l circularization | |
| 2022-10-18 12:04:43 [INFO] ptg000058l circularization done. Circularization info saved on ./potential_contigs/ptg000058l/ptg000058l.circularisationCheck.txt | |
| 2022-10-18 12:04:43 [INFO] Started ptg000058l (MitoFinder) annotation | |
| 2022-10-18 12:04:44 [INFO] ptg000011l annotation done. Annotation log saved on ./potential_contigs/ptg000011l/ptg000011l.annotation_MitoFinder.log | |
| 2022-10-18 12:04:45 [INFO] ptg000021l annotation done. Annotation log saved on ./potential_contigs/ptg000021l/ptg000021l.annotation_MitoFinder.log | |
| 2022-10-18 12:04:45 [INFO] ptg000025l annotation done. Annotation log saved on ./potential_contigs/ptg000025l/ptg000025l.annotation_MitoFinder.log | |
| 2022-10-18 12:04:49 [INFO] ptg000005l annotation done. Annotation log saved on ./potential_contigs/ptg000005l/ptg000005l.annotation_MitoFinder.log | |
| 2022-10-18 12:07:24 [INFO] ptg000006l annotation done. Annotation log saved on ./potential_contigs/ptg000006l/ptg000006l.annotation_MitoFinder.log | |
| 2022-10-18 12:07:31 [INFO] ptg000058l annotation done. Annotation log saved on ./potential_contigs/ptg000058l/ptg000058l.annotation_MitoFinder.log | |
| 2022-10-18 12:07:37 [INFO] ptg000061l annotation done. Annotation log saved on ./potential_contigs/ptg000061l/ptg000061l.annotation_MitoFinder.log | |
| 2022-10-18 12:07:48 [INFO] ptg000009l annotation done. Annotation log saved on ./potential_contigs/ptg000009l/ptg000009l.annotation_MitoFinder.log | |
| 2022-10-18 12:07:48 [INFO] Started ptg000043l rotation. | |
| 2022-10-18 12:07:48 [INFO] Started ptg000040l rotation. | |
| 2022-10-18 12:07:48 [INFO] tRNA-Phe is at reverse complement of ptg000040l.mitogenome.fa | |
| 2022-10-18 12:07:48 [INFO] For that reason we'll reverse complement ptg000040l.mitogenome.fa before the rotation | |
| 2022-10-18 12:07:48 [INFO] Started ptg000056l rotation. | |
| 2022-10-18 12:07:48 [INFO] Started ptg000074l rotation. | |
| 2022-10-18 12:07:48 [INFO] Started ptg000039l rotation. | |
| 2022-10-18 12:07:48 [INFO] tRNA-Phe is at reverse complement of ptg000056l.mitogenome.fa | |
| 2022-10-18 12:07:48 [INFO] For that reason we'll reverse complement ptg000056l.mitogenome.fa before the rotation | |
| 2022-10-18 12:07:48 [INFO] Started ptg000041l rotation. | |
| 2022-10-18 12:07:48 [INFO] tRNA-Phe is at reverse complement of ptg000039l.mitogenome.fa | |
| 2022-10-18 12:07:48 [INFO] For that reason we'll reverse complement ptg000039l.mitogenome.fa before the rotation | |
| 2022-10-18 12:07:48 [INFO] Started ptg000001l rotation. | |
| 2022-10-18 12:07:48 [INFO] Reverse complement generated: ptg000040l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:07:48 [INFO] Started ptg000062l rotation. | |
| 2022-10-18 12:07:48 [INFO] tRNA-Phe is at reverse complement of ptg000062l.mitogenome.fa | |
| 2022-10-18 12:07:48 [INFO] For that reason we'll reverse complement ptg000062l.mitogenome.fa before the rotation | |
| 2022-10-18 12:07:48 [INFO] Reverse complement generated: ptg000056l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:07:48 [INFO] Reverse complement generated: ptg000062l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:07:48 [INFO] Reverse complement generated: ptg000039l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:07:48 [INFO] Rotation of ptg000043l done. Rotated is at ptg000043l.mitogenome.rotated.fa | |
| 2022-10-18 12:07:48 [INFO] Rotation of ptg000041l done. Rotated is at ptg000041l.mitogenome.rotated.fa | |
| 2022-10-18 12:07:48 [INFO] Rotation of ptg000074l done. Rotated is at ptg000074l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| 2022-10-18 12:07:48 [INFO] Rotation of ptg000001l done. Rotated is at ptg000001l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| 2022-10-18 12:07:48 [INFO] Started ptg000073l rotation. | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| 2022-10-18 12:07:48 [INFO] Started ptg000024l rotation. | |
| 2022-10-18 12:07:48 [INFO] tRNA-Phe is at reverse complement of ptg000024l.mitogenome.fa | |
| 2022-10-18 12:07:48 [INFO] For that reason we'll reverse complement ptg000024l.mitogenome.fa before the rotation | |
| 2022-10-18 12:07:48 [INFO] Reverse complement generated: ptg000024l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:07:48 [INFO] Started ptg000013l rotation. | |
| 2022-10-18 12:07:48 [INFO] tRNA-Phe is at reverse complement of ptg000013l.mitogenome.fa | |
| 2022-10-18 12:07:48 [INFO] Rotation of ptg000073l done. Rotated is at ptg000073l.mitogenome.rotated.fa | |
| 2022-10-18 12:07:48 [INFO] For that reason we'll reverse complement ptg000013l.mitogenome.fa before the rotation | |
| 2022-10-18 12:07:48 [INFO] Reverse complement generated: ptg000013l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| 2022-10-18 12:07:48 [INFO] Started ptg000020l rotation. | |
| 2022-10-18 12:07:48 [INFO] Started ptg000064l rotation. | |
| 2022-10-18 12:07:48 [INFO] tRNA-Phe is at reverse complement of ptg000064l.mitogenome.fa | |
| 2022-10-18 12:07:48 [INFO] For that reason we'll reverse complement ptg000064l.mitogenome.fa before the rotation | |
| 2022-10-18 12:07:48 [INFO] Reverse complement generated: ptg000064l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:07:48 [INFO] Rotation of ptg000020l done. Rotated is at ptg000020l.mitogenome.rotated.fa | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| 2022-10-18 12:07:48 [INFO] Started ptg000059l rotation. | |
| 2022-10-18 12:07:48 [INFO] tRNA-Phe is at reverse complement of ptg000059l.mitogenome.fa | |
| 2022-10-18 12:07:48 [INFO] For that reason we'll reverse complement ptg000059l.mitogenome.fa before the rotation | |
| 2022-10-18 12:07:48 [INFO] Reverse complement generated: ptg000059l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:12:21 [INFO] Annotation of reverse complement for contig ptg000062l done | |
| 2022-10-18 12:12:21 [INFO] Rotation of ptg000062l done. Rotated is at ptg000062l.mitogenome.rotated.fa | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| 2022-10-18 12:12:21 [INFO] Started ptg000071l rotation. | |
| 2022-10-18 12:12:21 [INFO] tRNA-Phe is at reverse complement of ptg000071l.mitogenome.fa | |
| 2022-10-18 12:12:21 [INFO] For that reason we'll reverse complement ptg000071l.mitogenome.fa before the rotation | |
| 2022-10-18 12:12:21 [INFO] Reverse complement generated: ptg000071l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:12:21 [INFO] Annotation of reverse complement for contig ptg000024l done | |
| 2022-10-18 12:12:21 [INFO] Rotation of ptg000024l done. Rotated is at ptg000024l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:12:21 [INFO] Started ptg000042l rotation. | |
| 2022-10-18 12:12:21 [INFO] Rotation of ptg000042l done. Rotated is at ptg000042l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:12:21 [INFO] Started ptg000055l rotation. | |
| 2022-10-18 12:12:21 [INFO] Rotation of ptg000055l done. Rotated is at ptg000055l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:12:22 [INFO] Started ptg000029l rotation. | |
| 2022-10-18 12:12:22 [INFO] Rotation of ptg000029l done. Rotated is at ptg000029l.mitogenome.rotated.fa | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| 2022-10-18 12:12:22 [INFO] Started ptg000079l rotation. | |
| 2022-10-18 12:12:22 [INFO] tRNA-Phe is at reverse complement of ptg000079l.mitogenome.fa | |
| 2022-10-18 12:12:22 [INFO] For that reason we'll reverse complement ptg000079l.mitogenome.fa before the rotation | |
| 2022-10-18 12:12:22 [INFO] Reverse complement generated: ptg000079l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:12:23 [INFO] Annotation of reverse complement for contig ptg000064l done | |
| 2022-10-18 12:12:23 [INFO] Annotation of reverse complement for contig ptg000059l done | |
| 2022-10-18 12:12:23 [INFO] Rotation of ptg000064l done. Rotated is at ptg000064l.mitogenome.rotated.fa | |
| 2022-10-18 12:12:23 [INFO] Rotation of ptg000059l done. Rotated is at ptg000059l.mitogenome.rotated.fa | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| 2022-10-18 12:12:23 [INFO] Started ptg000044l rotation. | |
| 2022-10-18 12:12:23 [INFO] tRNA-Phe is at reverse complement of ptg000044l.mitogenome.fa | |
| 2022-10-18 12:12:23 [INFO] For that reason we'll reverse complement ptg000044l.mitogenome.fa before the rotation | |
| 2022-10-18 12:12:23 [INFO] Reverse complement generated: ptg000044l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| 2022-10-18 12:12:23 [INFO] Started ptg000007l rotation. | |
| 2022-10-18 12:12:23 [INFO] tRNA-Phe is at reverse complement of ptg000007l.mitogenome.fa | |
| 2022-10-18 12:12:23 [INFO] For that reason we'll reverse complement ptg000007l.mitogenome.fa before the rotation | |
| 2022-10-18 12:12:23 [INFO] Reverse complement generated: ptg000007l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:12:23 [INFO] Annotation of reverse complement for contig ptg000013l done | |
| 2022-10-18 12:12:23 [INFO] Rotation of ptg000013l done. Rotated is at ptg000013l.mitogenome.rotated.fa | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| 2022-10-18 12:12:23 [INFO] Started ptg000077l rotation. | |
| 2022-10-18 12:12:23 [INFO] Rotation of ptg000077l done. Rotated is at ptg000077l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:12:23 [INFO] Started ptg000034l rotation. | |
| 2022-10-18 12:12:23 [INFO] Rotation of ptg000034l done. Rotated is at ptg000034l.mitogenome.rotated.fa | |
| 2022-10-18 12:12:23 [INFO] Annotation of reverse complement for contig ptg000056l done | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:12:23 [INFO] Started ptg000070l rotation. | |
| 2022-10-18 12:12:23 [INFO] tRNA-Phe is at reverse complement of ptg000070l.mitogenome.fa | |
| 2022-10-18 12:12:23 [INFO] For that reason we'll reverse complement ptg000070l.mitogenome.fa before the rotation | |
| 2022-10-18 12:12:23 [INFO] Reverse complement generated: ptg000070l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:12:23 [INFO] Rotation of ptg000056l done. Rotated is at ptg000056l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:12:23 [INFO] Started ptg000072l rotation. | |
| 2022-10-18 12:12:23 [INFO] Rotation of ptg000072l done. Rotated is at ptg000072l.mitogenome.rotated.fa | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| 2022-10-18 12:12:23 [INFO] Started ptg000003l rotation. | |
| 2022-10-18 12:12:23 [INFO] tRNA-Phe is at reverse complement of ptg000003l.mitogenome.fa | |
| 2022-10-18 12:12:23 [INFO] For that reason we'll reverse complement ptg000003l.mitogenome.fa before the rotation | |
| 2022-10-18 12:12:23 [INFO] Reverse complement generated: ptg000003l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:12:24 [INFO] Annotation of reverse complement for contig ptg000040l done | |
| 2022-10-18 12:12:24 [INFO] Rotation of ptg000040l done. Rotated is at ptg000040l.mitogenome.rotated.fa | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| 2022-10-18 12:12:24 [INFO] Started ptg000017l rotation. | |
| 2022-10-18 12:12:24 [INFO] Rotation of ptg000017l done. Rotated is at ptg000017l.mitogenome.rotated.fa | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| 2022-10-18 12:12:24 [INFO] Started ptg000048l rotation. | |
| 2022-10-18 12:12:24 [INFO] tRNA-Phe is at reverse complement of ptg000048l.mitogenome.fa | |
| 2022-10-18 12:12:24 [INFO] For that reason we'll reverse complement ptg000048l.mitogenome.fa before the rotation | |
| 2022-10-18 12:12:24 [INFO] Reverse complement generated: ptg000048l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:12:24 [INFO] Annotation of reverse complement for contig ptg000039l done | |
| 2022-10-18 12:12:24 [INFO] Rotation of ptg000039l done. Rotated is at ptg000039l.mitogenome.rotated.fa | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| 2022-10-18 12:12:24 [INFO] Started ptg000028l rotation. | |
| 2022-10-18 12:12:24 [INFO] tRNA-Phe is at reverse complement of ptg000028l.mitogenome.fa | |
| 2022-10-18 12:12:24 [INFO] For that reason we'll reverse complement ptg000028l.mitogenome.fa before the rotation | |
| 2022-10-18 12:12:24 [INFO] Reverse complement generated: ptg000028l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:16:58 [INFO] Annotation of reverse complement for contig ptg000079l done | |
| 2022-10-18 12:16:59 [INFO] Rotation of ptg000079l done. Rotated is at ptg000079l.mitogenome.rotated.fa | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| 2022-10-18 12:16:59 [INFO] Started ptg000045l rotation. | |
| 2022-10-18 12:16:59 [INFO] Rotation of ptg000045l done. Rotated is at ptg000045l.mitogenome.rotated.fa | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| 2022-10-18 12:16:59 [INFO] Started ptg000012l rotation. | |
| 2022-10-18 12:16:59 [INFO] Rotation of ptg000012l done. Rotated is at ptg000012l.mitogenome.rotated.fa | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| 2022-10-18 12:16:59 [INFO] Started ptg000069l rotation. | |
| 2022-10-18 12:16:59 [INFO] Rotation of ptg000069l done. Rotated is at ptg000069l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:16:59 [INFO] Started ptg000066l rotation. | |
| 2022-10-18 12:16:59 [INFO] tRNA-Phe is at reverse complement of ptg000066l.mitogenome.fa | |
| 2022-10-18 12:16:59 [INFO] For that reason we'll reverse complement ptg000066l.mitogenome.fa before the rotation | |
| 2022-10-18 12:16:59 [INFO] Reverse complement generated: ptg000066l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:16:59 [INFO] Annotation of reverse complement for contig ptg000007l done | |
| 2022-10-18 12:16:59 [INFO] Rotation of ptg000007l done. Rotated is at ptg000007l.mitogenome.rotated.fa | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| 2022-10-18 12:16:59 [INFO] Started ptg000038l rotation. | |
| 2022-10-18 12:16:59 [INFO] tRNA-Phe is at reverse complement of ptg000038l.mitogenome.fa | |
| 2022-10-18 12:16:59 [INFO] For that reason we'll reverse complement ptg000038l.mitogenome.fa before the rotation | |
| 2022-10-18 12:16:59 [INFO] Reverse complement generated: ptg000038l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:17:02 [INFO] Annotation of reverse complement for contig ptg000070l done | |
| 2022-10-18 12:17:02 [INFO] Rotation of ptg000070l done. Rotated is at ptg000070l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:17:02 [INFO] Started ptg000078l rotation. | |
| 2022-10-18 12:17:02 [INFO] Rotation of ptg000078l done. Rotated is at ptg000078l.mitogenome.rotated.fa | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| 2022-10-18 12:17:02 [INFO] Started ptg000049l rotation. | |
| 2022-10-18 12:17:02 [INFO] tRNA-Phe is at reverse complement of ptg000049l.mitogenome.fa | |
| 2022-10-18 12:17:02 [INFO] For that reason we'll reverse complement ptg000049l.mitogenome.fa before the rotation | |
| 2022-10-18 12:17:02 [INFO] Reverse complement generated: ptg000049l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:17:02 [INFO] Annotation of reverse complement for contig ptg000048l done | |
| 2022-10-18 12:17:02 [INFO] Rotation of ptg000048l done. Rotated is at ptg000048l.mitogenome.rotated.fa | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| 2022-10-18 12:17:02 [INFO] Started ptg000010l rotation. | |
| 2022-10-18 12:17:02 [INFO] tRNA-Phe is at reverse complement of ptg000010l.mitogenome.fa | |
| 2022-10-18 12:17:02 [INFO] For that reason we'll reverse complement ptg000010l.mitogenome.fa before the rotation | |
| 2022-10-18 12:17:02 [INFO] Reverse complement generated: ptg000010l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:17:03 [INFO] Annotation of reverse complement for contig ptg000044l done | |
| 2022-10-18 12:17:03 [INFO] Rotation of ptg000044l done. Rotated is at ptg000044l.mitogenome.rotated.fa | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| 2022-10-18 12:17:03 [INFO] Started ptg000026l rotation. | |
| 2022-10-18 12:17:03 [INFO] tRNA-Phe is at reverse complement of ptg000026l.mitogenome.fa | |
| 2022-10-18 12:17:03 [INFO] For that reason we'll reverse complement ptg000026l.mitogenome.fa before the rotation | |
| 2022-10-18 12:17:03 [INFO] Reverse complement generated: ptg000026l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:17:04 [INFO] Annotation of reverse complement for contig ptg000003l done | |
| 2022-10-18 12:17:04 [INFO] Rotation of ptg000003l done. Rotated is at ptg000003l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:17:04 [INFO] Started ptg000065l rotation. | |
| 2022-10-18 12:17:04 [INFO] Rotation of ptg000065l done. Rotated is at ptg000065l.mitogenome.rotated.fa | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| 2022-10-18 12:17:04 [INFO] Started ptg000008l rotation. | |
| 2022-10-18 12:17:04 [INFO] tRNA-Phe is at reverse complement of ptg000008l.mitogenome.fa | |
| 2022-10-18 12:17:04 [INFO] For that reason we'll reverse complement ptg000008l.mitogenome.fa before the rotation | |
| 2022-10-18 12:17:04 [INFO] Reverse complement generated: ptg000008l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:17:04 [INFO] Annotation of reverse complement for contig ptg000071l done | |
| 2022-10-18 12:17:04 [INFO] Rotation of ptg000071l done. Rotated is at ptg000071l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:17:04 [INFO] Started ptg000030l rotation. | |
| 2022-10-18 12:17:04 [INFO] tRNA-Phe is at reverse complement of ptg000030l.mitogenome.fa | |
| 2022-10-18 12:17:04 [INFO] For that reason we'll reverse complement ptg000030l.mitogenome.fa before the rotation | |
| 2022-10-18 12:17:04 [INFO] Reverse complement generated: ptg000030l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:17:05 [INFO] Annotation of reverse complement for contig ptg000028l done | |
| 2022-10-18 12:17:05 [INFO] Rotation of ptg000028l done. Rotated is at ptg000028l.mitogenome.rotated.fa | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| 2022-10-18 12:17:05 [INFO] Started ptg000063l rotation. | |
| 2022-10-18 12:17:05 [INFO] tRNA-Phe is at reverse complement of ptg000063l.mitogenome.fa | |
| 2022-10-18 12:17:05 [INFO] For that reason we'll reverse complement ptg000063l.mitogenome.fa before the rotation | |
| 2022-10-18 12:17:05 [INFO] Reverse complement generated: ptg000063l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:21:07 [INFO] Annotation of reverse complement for contig ptg000049l done | |
| 2022-10-18 12:21:07 [INFO] Rotation of ptg000049l done. Rotated is at ptg000049l.mitogenome.rotated.fa | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| 2022-10-18 12:21:07 [INFO] Started ptg000037l rotation. | |
| 2022-10-18 12:21:07 [INFO] Rotation of ptg000037l done. Rotated is at ptg000037l.mitogenome.rotated.fa | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| 2022-10-18 12:21:07 [INFO] Started ptg000054l rotation. | |
| 2022-10-18 12:21:07 [INFO] Rotation of ptg000054l done. Rotated is at ptg000054l.mitogenome.rotated.fa | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| 2022-10-18 12:21:07 [INFO] Started ptg000031l rotation. | |
| 2022-10-18 12:21:07 [INFO] Rotation of ptg000031l done. Rotated is at ptg000031l.mitogenome.rotated.fa | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| 2022-10-18 12:21:07 [INFO] Started ptg000004l rotation. | |
| 2022-10-18 12:21:07 [INFO] Rotation of ptg000004l done. Rotated is at ptg000004l.mitogenome.rotated.fa | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| 2022-10-18 12:21:07 [INFO] Started ptg000060l rotation. | |
| 2022-10-18 12:21:07 [INFO] Rotation of ptg000060l done. Rotated is at ptg000060l.mitogenome.rotated.fa | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| 2022-10-18 12:21:07 [INFO] Started ptg000053l rotation. | |
| 2022-10-18 12:21:07 [INFO] Rotation of ptg000053l done. Rotated is at ptg000053l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:21:07 [INFO] Started ptg000023l rotation. | |
| 2022-10-18 12:21:07 [INFO] tRNA-Phe is at reverse complement of ptg000023l.mitogenome.fa | |
| 2022-10-18 12:21:07 [INFO] For that reason we'll reverse complement ptg000023l.mitogenome.fa before the rotation | |
| 2022-10-18 12:21:07 [INFO] Reverse complement generated: ptg000023l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:21:37 [INFO] Annotation of reverse complement for contig ptg000066l done | |
| 2022-10-18 12:21:37 [INFO] Rotation of ptg000066l done. Rotated is at ptg000066l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:21:37 [INFO] Started ptg000067l rotation. | |
| 2022-10-18 12:21:37 [INFO] Rotation of ptg000067l done. Rotated is at ptg000067l.mitogenome.rotated.fa | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| 2022-10-18 12:21:37 [INFO] Started ptg000002l rotation. | |
| 2022-10-18 12:21:37 [INFO] Rotation of ptg000002l done. Rotated is at ptg000002l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:21:37 [INFO] Started ptg000068l rotation. | |
| 2022-10-18 12:21:37 [INFO] Rotation of ptg000068l done. Rotated is at ptg000068l.mitogenome.rotated.fa | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| 2022-10-18 12:21:37 [INFO] Started ptg000076l rotation. | |
| 2022-10-18 12:21:37 [INFO] Rotation of ptg000076l done. Rotated is at ptg000076l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:21:37 [INFO] Started ptg000050l rotation. | |
| 2022-10-18 12:21:37 [INFO] Rotation of ptg000050l done. Rotated is at ptg000050l.mitogenome.rotated.fa | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| 2022-10-18 12:21:37 [INFO] Started ptg000022l rotation. | |
| 2022-10-18 12:21:37 [INFO] tRNA-Phe is at reverse complement of ptg000022l.mitogenome.fa | |
| 2022-10-18 12:21:37 [INFO] For that reason we'll reverse complement ptg000022l.mitogenome.fa before the rotation | |
| 2022-10-18 12:21:37 [INFO] Reverse complement generated: ptg000022l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:21:38 [INFO] Annotation of reverse complement for contig ptg000038l done | |
| 2022-10-18 12:21:38 [INFO] Rotation of ptg000038l done. Rotated is at ptg000038l.mitogenome.rotated.fa | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| 2022-10-18 12:21:39 [INFO] Started ptg000051l rotation. | |
| 2022-10-18 12:21:39 [INFO] Rotation of ptg000051l done. Rotated is at ptg000051l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:21:39 [INFO] Started ptg000027l rotation. | |
| 2022-10-18 12:21:39 [INFO] Rotation of ptg000027l done. Rotated is at ptg000027l.mitogenome.rotated.fa | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| 2022-10-18 12:21:39 [INFO] Started ptg000015l rotation. | |
| 2022-10-18 12:21:39 [INFO] tRNA-Phe is at reverse complement of ptg000015l.mitogenome.fa | |
| 2022-10-18 12:21:39 [INFO] For that reason we'll reverse complement ptg000015l.mitogenome.fa before the rotation | |
| 2022-10-18 12:21:39 [INFO] Reverse complement generated: ptg000015l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:21:39 [INFO] Annotation of reverse complement for contig ptg000010l done | |
| 2022-10-18 12:21:39 [INFO] Rotation of ptg000010l done. Rotated is at ptg000010l.mitogenome.rotated.fa | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| 2022-10-18 12:21:39 [INFO] Started ptg000035l rotation. | |
| 2022-10-18 12:21:39 [INFO] tRNA-Phe is at reverse complement of ptg000035l.mitogenome.fa | |
| 2022-10-18 12:21:39 [INFO] For that reason we'll reverse complement ptg000035l.mitogenome.fa before the rotation | |
| 2022-10-18 12:21:39 [INFO] Reverse complement generated: ptg000035l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:21:42 [INFO] Annotation of reverse complement for contig ptg000026l done | |
| 2022-10-18 12:21:42 [INFO] Rotation of ptg000026l done. Rotated is at ptg000026l.mitogenome.rotated.fa | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| 2022-10-18 12:21:42 [INFO] Started ptg000047l rotation. | |
| 2022-10-18 12:21:42 [INFO] Rotation of ptg000047l done. Rotated is at ptg000047l.mitogenome.rotated.fa | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| 2022-10-18 12:21:42 [INFO] Started ptg000016l rotation. | |
| 2022-10-18 12:21:42 [INFO] Rotation of ptg000016l done. Rotated is at ptg000016l.mitogenome.rotated.fa | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| 2022-10-18 12:21:42 [INFO] Started ptg000046l rotation. | |
| 2022-10-18 12:21:42 [INFO] tRNA-Phe is at reverse complement of ptg000046l.mitogenome.fa | |
| 2022-10-18 12:21:42 [INFO] For that reason we'll reverse complement ptg000046l.mitogenome.fa before the rotation | |
| 2022-10-18 12:21:42 [INFO] Reverse complement generated: ptg000046l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:21:43 [INFO] Annotation of reverse complement for contig ptg000063l done | |
| 2022-10-18 12:21:43 [INFO] Rotation of ptg000063l done. Rotated is at ptg000063l.mitogenome.rotated.fa | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| 2022-10-18 12:21:43 [INFO] Started ptg000052l rotation. | |
| 2022-10-18 12:21:43 [INFO] Rotation of ptg000052l done. Rotated is at ptg000052l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:21:43 [INFO] Started ptg000057l rotation. | |
| 2022-10-18 12:21:43 [INFO] tRNA-Phe is at reverse complement of ptg000057l.mitogenome.fa | |
| 2022-10-18 12:21:43 [INFO] For that reason we'll reverse complement ptg000057l.mitogenome.fa before the rotation | |
| 2022-10-18 12:21:43 [INFO] Reverse complement generated: ptg000057l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:21:43 [INFO] Annotation of reverse complement for contig ptg000030l done | |
| 2022-10-18 12:21:43 [INFO] Rotation of ptg000030l done. Rotated is at ptg000030l.mitogenome.rotated.fa | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| 2022-10-18 12:21:43 [INFO] Started ptg000075l rotation. | |
| 2022-10-18 12:21:43 [INFO] tRNA-Phe is at reverse complement of ptg000075l.mitogenome.fa | |
| 2022-10-18 12:21:43 [INFO] For that reason we'll reverse complement ptg000075l.mitogenome.fa before the rotation | |
| 2022-10-18 12:21:43 [INFO] Reverse complement generated: ptg000075l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:21:46 [INFO] Annotation of reverse complement for contig ptg000008l done | |
| 2022-10-18 12:21:46 [INFO] Rotation of ptg000008l done. Rotated is at ptg000008l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:21:46 [INFO] Started ptg000014l rotation. | |
| 2022-10-18 12:21:46 [INFO] tRNA-Phe is at reverse complement of ptg000014l.mitogenome.fa | |
| 2022-10-18 12:21:46 [INFO] For that reason we'll reverse complement ptg000014l.mitogenome.fa before the rotation | |
| 2022-10-18 12:21:46 [INFO] Reverse complement generated: ptg000014l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:25:43 [INFO] Annotation of reverse complement for contig ptg000023l done | |
| 2022-10-18 12:25:43 [INFO] Rotation of ptg000023l done. Rotated is at ptg000023l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:25:43 [INFO] Started ptg000011l rotation. | |
| 2022-10-18 12:25:43 [INFO] tRNA-Phe is at reverse complement of ptg000011l.mitogenome.fa | |
| 2022-10-18 12:25:43 [INFO] For that reason we'll reverse complement ptg000011l.mitogenome.fa before the rotation | |
| 2022-10-18 12:25:43 [INFO] Reverse complement generated: ptg000011l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:26:11 [INFO] Annotation of reverse complement for contig ptg000022l done | |
| 2022-10-18 12:26:11 [INFO] Rotation of ptg000022l done. Rotated is at ptg000022l.mitogenome.rotated.fa | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| 2022-10-18 12:26:11 [INFO] Started ptg000018l rotation. | |
| 2022-10-18 12:26:11 [INFO] tRNA-Phe is at reverse complement of ptg000018l.mitogenome.fa | |
| 2022-10-18 12:26:11 [INFO] For that reason we'll reverse complement ptg000018l.mitogenome.fa before the rotation | |
| 2022-10-18 12:26:11 [INFO] Reverse complement generated: ptg000018l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:26:15 [INFO] Annotation of reverse complement for contig ptg000015l done | |
| 2022-10-18 12:26:15 [INFO] Rotation of ptg000015l done. Rotated is at ptg000015l.mitogenome.rotated.fa | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| 2022-10-18 12:26:15 [INFO] Started ptg000021l rotation. | |
| 2022-10-18 12:26:15 [INFO] Rotation of ptg000021l done. Rotated is at ptg000021l.mitogenome.rotated.fa | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| 2022-10-18 12:26:15 [INFO] Started ptg000032l rotation. | |
| 2022-10-18 12:26:15 [INFO] tRNA-Phe is at reverse complement of ptg000032l.mitogenome.fa | |
| 2022-10-18 12:26:15 [INFO] For that reason we'll reverse complement ptg000032l.mitogenome.fa before the rotation | |
| 2022-10-18 12:26:15 [INFO] Reverse complement generated: ptg000032l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:26:17 [INFO] Annotation of reverse complement for contig ptg000046l done | |
| 2022-10-18 12:26:17 [INFO] Rotation of ptg000046l done. Rotated is at ptg000046l.mitogenome.rotated.fa | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| 2022-10-18 12:26:17 [INFO] Started ptg000025l rotation. | |
| 2022-10-18 12:26:17 [INFO] tRNA-Phe is at reverse complement of ptg000025l.mitogenome.fa | |
| 2022-10-18 12:26:17 [INFO] For that reason we'll reverse complement ptg000025l.mitogenome.fa before the rotation | |
| 2022-10-18 12:26:17 [INFO] Reverse complement generated: ptg000025l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:26:17 [INFO] Annotation of reverse complement for contig ptg000035l done | |
| 2022-10-18 12:26:17 [INFO] Rotation of ptg000035l done. Rotated is at ptg000035l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:26:17 [INFO] Started ptg000005l rotation. | |
| 2022-10-18 12:26:17 [INFO] tRNA-Phe is at reverse complement of ptg000005l.mitogenome.fa | |
| 2022-10-18 12:26:17 [INFO] For that reason we'll reverse complement ptg000005l.mitogenome.fa before the rotation | |
| 2022-10-18 12:26:17 [INFO] Reverse complement generated: ptg000005l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:26:19 [INFO] Annotation of reverse complement for contig ptg000057l done | |
| 2022-10-18 12:26:19 [INFO] Rotation of ptg000057l done. Rotated is at ptg000057l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:26:19 [INFO] Started ptg000061l rotation. | |
| 2022-10-18 12:26:19 [INFO] Rotation of ptg000061l done. Rotated is at ptg000061l.mitogenome.rotated.fa | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| 2022-10-18 12:26:19 [INFO] Started ptg000009l rotation. | |
| 2022-10-18 12:26:19 [INFO] Rotation of ptg000009l done. Rotated is at ptg000009l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:26:19 [INFO] Started ptg000006l rotation. | |
| 2022-10-18 12:26:19 [INFO] tRNA-Phe is at reverse complement of ptg000006l.mitogenome.fa | |
| 2022-10-18 12:26:19 [INFO] For that reason we'll reverse complement ptg000006l.mitogenome.fa before the rotation | |
| 2022-10-18 12:26:19 [INFO] Reverse complement generated: ptg000006l_RC.mitogenome.fa. Starting reverse complement annotation... | |
| 2022-10-18 12:26:22 [INFO] Annotation of reverse complement for contig ptg000014l done | |
| 2022-10-18 12:26:22 [INFO] Rotation of ptg000014l done. Rotated is at ptg000014l.mitogenome.rotated.fa | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| 2022-10-18 12:26:22 [INFO] Started ptg000058l rotation. | |
| 2022-10-18 12:26:22 [INFO] Rotation of ptg000058l done. Rotated is at ptg000058l.mitogenome.rotated.fa | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| 2022-10-18 12:26:22 [INFO] Annotation of reverse complement for contig ptg000075l done | |
| 2022-10-18 12:26:22 [INFO] Rotation of ptg000075l done. Rotated is at ptg000075l.mitogenome.rotated.fa | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| 2022-10-18 12:29:53 [INFO] Annotation of reverse complement for contig ptg000011l done | |
| 2022-10-18 12:29:53 [INFO] Rotation of ptg000011l done. Rotated is at ptg000011l.mitogenome.rotated.fa | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| 2022-10-18 12:30:04 [INFO] Annotation of reverse complement for contig ptg000018l done | |
| 2022-10-18 12:30:04 [INFO] Rotation of ptg000018l done. Rotated is at ptg000018l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:30:06 [INFO] Annotation of reverse complement for contig ptg000032l done | |
| 2022-10-18 12:30:06 [INFO] Rotation of ptg000032l done. Rotated is at ptg000032l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:30:07 [INFO] Annotation of reverse complement for contig ptg000025l done | |
| 2022-10-18 12:30:07 [INFO] Rotation of ptg000025l done. Rotated is at ptg000025l.mitogenome.rotated.fa | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:30:18 [INFO] Annotation of reverse complement for contig ptg000006l done | |
| 2022-10-18 12:30:18 [INFO] Rotation of ptg000006l done. Rotated is at ptg000006l.mitogenome.rotated.fa | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| 2022-10-18 12:30:20 [INFO] Annotation of reverse complement for contig ptg000005l done | |
| 2022-10-18 12:30:20 [INFO] Rotation of ptg000005l done. Rotated is at ptg000005l.mitogenome.rotated.fa | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| 2022-10-18 12:30:20 [INFO] 7. Now the rotated contigs will be aligned | |
| 2022-10-18 12:30:20 [INFO] List of contigs that will be aligned: ['ptg000043l.mitogenome.rotated.fa', 'ptg000041l.mitogenome.rotated.fa', 'ptg000001l.mitogenome.rotated.fa', 'ptg000074l.mitogenome.rotated.fa', 'ptg000073l.mitogenome.rotated.fa', 'ptg000020l.mitogenome.rotated.fa', 'ptg000062l.mitogenome.rotated.fa', 'ptg000024l.mitogenome.rotated.fa', 'ptg000042l.mitogenome.rotated.fa', 'ptg000055l.mitogenome.rotated.fa', 'ptg000029l.mitogenome.rotated.fa', 'ptg000064l.mitogenome.rotated.fa', 'ptg000059l.mitogenome.rotated.fa', 'ptg000013l.mitogenome.rotated.fa', 'ptg000077l.mitogenome.rotated.fa', 'ptg000034l.mitogenome.rotated.fa', 'ptg000056l.mitogenome.rotated.fa', 'ptg000072l.mitogenome.rotated.fa', 'ptg000040l.mitogenome.rotated.fa', 'ptg000017l.mitogenome.rotated.fa', 'ptg000039l.mitogenome.rotated.fa', 'ptg000079l.mitogenome.rotated.fa', 'ptg000045l.mitogenome.rotated.fa', 'ptg000012l.mitogenome.rotated.fa', 'ptg000069l.mitogenome.rotated.fa', 'ptg000007l.mitogenome.rotated.fa', 'ptg000070l.mitogenome.rotated.fa', 'ptg000078l.mitogenome.rotated.fa', 'ptg000048l.mitogenome.rotated.fa', 'ptg000044l.mitogenome.rotated.fa', 'ptg000003l.mitogenome.rotated.fa', 'ptg000065l.mitogenome.rotated.fa', 'ptg000071l.mitogenome.rotated.fa', 'ptg000028l.mitogenome.rotated.fa', 'ptg000049l.mitogenome.rotated.fa', 'ptg000037l.mitogenome.rotated.fa', 'ptg000054l.mitogenome.rotated.fa', 'ptg000031l.mitogenome.rotated.fa', 'ptg000004l.mitogenome.rotated.fa', 'ptg000060l.mitogenome.rotated.fa', 'ptg000053l.mitogenome.rotated.fa', 'ptg000066l.mitogenome.rotated.fa', 'ptg000067l.mitogenome.rotated.fa', 'ptg000002l.mitogenome.rotated.fa', 'ptg000068l.mitogenome.rotated.fa', 'ptg000076l.mitogenome.rotated.fa', 'ptg000050l.mitogenome.rotated.fa', 'ptg000038l.mitogenome.rotated.fa', 'ptg000051l.mitogenome.rotated.fa', 'ptg000027l.mitogenome.rotated.fa', 'ptg000010l.mitogenome.rotated.fa', 'ptg000026l.mitogenome.rotated.fa', 'ptg000047l.mitogenome.rotated.fa', 'ptg000016l.mitogenome.rotated.fa', 'ptg000063l.mitogenome.rotated.fa', 'ptg000052l.mitogenome.rotated.fa', 'ptg000030l.mitogenome.rotated.fa', 'ptg000008l.mitogenome.rotated.fa', 'ptg000023l.mitogenome.rotated.fa', 'ptg000022l.mitogenome.rotated.fa', 'ptg000015l.mitogenome.rotated.fa', 'ptg000021l.mitogenome.rotated.fa', 'ptg000046l.mitogenome.rotated.fa', 'ptg000035l.mitogenome.rotated.fa', 'ptg000057l.mitogenome.rotated.fa', 'ptg000061l.mitogenome.rotated.fa', 'ptg000009l.mitogenome.rotated.fa', 'ptg000014l.mitogenome.rotated.fa', 'ptg000058l.mitogenome.rotated.fa', 'ptg000075l.mitogenome.rotated.fa', 'ptg000011l.mitogenome.rotated.fa', 'ptg000018l.mitogenome.rotated.fa', 'ptg000032l.mitogenome.rotated.fa', 'ptg000025l.mitogenome.rotated.fa', 'ptg000006l.mitogenome.rotated.fa', 'ptg000005l.mitogenome.rotated.fa'] | |
| 2022-10-18 12:30:20 [INFO] MAFFT alignment will be called with: | |
| mafft --quiet --clustalout --thread 4 all_mitogenomes.rotated.fa > all_mitogenomes.rotated.aligned.fa | |
| 2022-10-18 12:32:38 [INFO] Alignment done and saved at ./final_mitogenome_choice/all_mitogenomes.rotated.aligned.fa | |
| 2022-10-18 12:32:38 [INFO] 8. Now we will choose the most representative contig | |
| /bin/MitoHiFi/getReprContig.py:96: UserWarning: Warning: representative contig contains frameshifts | |
| warnings.warn("Warning: representative contig contains frameshifts") | |
| 2022-10-18 12:32:46 [INFO] Representative contig is ptg000013l that belongs to Cluster 0. This contig will be our final mitogenome. See all contigs and clusters in cdhit.out.clstr | |
| 2022-10-18 12:35:21 [INFO] 9. Calculating final stats for final mitogenome and other potential contigs. | |
| Stats will be saved on contigs_stats.tsv file. | |
| Gene ND1 contains frameshift | |
| Gene CYTB contains frameshift | |
| Gene ND4L contains frameshift | |
| Gene ND4 contains frameshift | |
| Gene ND5 contains frameshift | |
| Gene ND3 contains frameshift | |
| Gene COX3 contains frameshift | |
| Gene ATP6 contains frameshift | |
| Gene COX2 contains frameshift | |
| Gene COX1 contains frameshift | |
| Gene ND2 contains frameshift | |
| 2022-10-18 12:35:21 [INFO] Pipeline finished! | |
| 2022-10-18 12:35:21 [INFO] Run time: 4500.39 seconds | |
| $ echo $? | |
| 0 | |
| $ ls -lh exampleFiles | |
| total 39M | |
| drwxr-xr-x. 1 root root 72 Oct 18 14:35 contigs_circularization/ | |
| drwxr-xr-x. 1 root root 130 Oct 18 14:35 contigs_filtering/ | |
| -rw-r--r--. 1 root root 17K Oct 18 14:35 contigs_stats.tsv | |
| drwxr-xr-x. 1 root root 352 Oct 18 14:35 final_mitogenome.annotation/ | |
| -rw-r--r--. 1 root root 1.4K Oct 18 14:35 final_mitogenome.annotation_MitoFinder.log | |
| drwxr-xr-x. 1 root root 168 Oct 18 14:35 final_mitogenome_choice/ | |
| -rw-r--r--. 1 root root 15K Oct 18 14:35 final_mitogenome.fasta | |
| -rw-r--r--. 1 root root 30K Oct 18 14:35 final_mitogenome.gb | |
| -rw-r--r--. 1 jaruga jaruga 1 Oct 11 17:17 .gitkeep | |
| -rw-r--r--. 1 jaruga jaruga 15M Oct 11 17:17 ilDeiPorc1.reads.fa | |
| -rw-r--r--. 1 jaruga jaruga 16K Oct 11 17:17 MW539688.1.fasta | |
| -rw-r--r--. 1 jaruga jaruga 33K Oct 11 17:17 MW539688.1.gb | |
| -rw-r--r--. 1 jaruga jaruga 16K Oct 11 17:17 NC_016067.1.fasta | |
| -rw-r--r--. 1 jaruga jaruga 38K Oct 11 17:17 NC_016067.1.gb | |
| drwxr-xr-x. 1 root root 1.5K Oct 18 14:35 potential_contigs/ | |
| drwxr-xr-x. 1 root root 1.9K Oct 18 14:35 reads_mapping_and_assembly/ | |
| -rw-r--r--. 1 jaruga jaruga 24M Oct 11 17:17 test.fa | |
| $ ls -lh exampleFiles/final_mitogenome.fasta | |
| -rw-r--r--. 1 root root 15K Oct 18 14:35 exampleFiles/final_mitogenome.fasta | |
| $ ls -lh exampleFiles/final_mitogenome.gb | |
| -rw-r--r--. 1 root root 30K Oct 18 14:35 exampleFiles/final_mitogenome.gb | |
| $ ls -lh exampleFiles/contigs_stats.tsv | |
| -rw-r--r--. 1 root root 17K Oct 18 14:35 exampleFiles/contigs_stats.tsv |
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