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klmr/repro.r

Created April 7, 2014 12:44
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Reproducible name clash with R packages
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repro.r
# Reproduce a name clash with packages
# R 3.0.2
library(DESeq) # 1.14.0
x = do.call(rbind, rep(list(read.table(text='1 2\n3 4')), 10))
m = c('V1', 'V2')
cds = estimateSizeFactors(newCountDataSet(x, m))
cds1 = estimateDispersions(cds, method='blind', fitType='local')
lp = function () 42
cds2 = estimateDispersions(cds, method='blind', fitType='local')
# Error in lp(c(…, :
# unused argument (c(…))
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