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flagstat CPU profiling
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| <?xml version="1.0" encoding="UTF-8" standalone="no"?> | |
| <!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" | |
| "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd"> | |
| <!-- Generated by graphviz version 2.38.0 (20140413.2041) | |
| --> | |
| <!-- Title: flagstat Pages: 1 --> | |
| <svg width="100%" height="100%" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink"> | |
| <script type="text/ecmascript"><![CDATA[ | |
| /** | |
| * SVGPan library 1.2.1 | |
| * ====================== | |
| * | |
| * Given an unique existing element with id "viewport" (or when missing, the first g | |
| * element), including the the library into any SVG adds the following capabilities: | |
| * | |
| * - Mouse panning | |
| * - Mouse zooming (using the wheel) | |
| * - Object dragging | |
| * | |
| * You can configure the behavior of the pan/zoom/drag with the variables | |
| * listed in the CONFIGURATION section of this file. | |
| * | |
| * Known issues: | |
| * | |
| * - Zooming (while panning) on Safari has still some issues | |
| * | |
| * Releases: | |
| * | |
| * 1.2.1, Mon Jul 4 00:33:18 CEST 2011, Andrea Leofreddi | |
| * - Fixed a regression with mouse wheel (now working on Firefox 5) | |
| * - Working with viewBox attribute (#4) | |
| * - Added "use strict;" and fixed resulting warnings (#5) | |
| * - Added configuration variables, dragging is disabled by default (#3) | |
| * | |
| * 1.2, Sat Mar 20 08:42:50 GMT 2010, Zeng Xiaohui | |
| * Fixed a bug with browser mouse handler interaction | |
| * | |
| * 1.1, Wed Feb 3 17:39:33 GMT 2010, Zeng Xiaohui | |
| * Updated the zoom code to support the mouse wheel on Safari/Chrome | |
| * | |
| * 1.0, Andrea Leofreddi | |
| * First release | |
| * | |
| * This code is licensed under the following BSD license: | |
| * | |
| * Copyright 2009-2010 Andrea Leofreddi <a.leofreddi@itcharm.com>. All rights reserved. | |
| * | |
| * Redistribution and use in source and binary forms, with or without modification, are | |
| * permitted provided that the following conditions are met: | |
| * | |
| * 1. Redistributions of source code must retain the above copyright notice, this list of | |
| * conditions and the following disclaimer. | |
| * | |
| * 2. Redistributions in binary form must reproduce the above copyright notice, this list | |
| * of conditions and the following disclaimer in the documentation and/or other materials | |
| * provided with the distribution. | |
| * | |
| * THIS SOFTWARE IS PROVIDED BY Andrea Leofreddi ``AS IS'' AND ANY EXPRESS OR IMPLIED | |
| * WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND | |
| * FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL Andrea Leofreddi OR | |
| * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR | |
| * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR | |
| * SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON | |
| * ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING | |
| * NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF | |
| * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. | |
| * | |
| * The views and conclusions contained in the software and documentation are those of the | |
| * authors and should not be interpreted as representing official policies, either expressed | |
| * or implied, of Andrea Leofreddi. | |
| */ | |
| "use strict"; | |
| /// CONFIGURATION | |
| /// ====> | |
| var enablePan = 1; // 1 or 0: enable or disable panning (default enabled) | |
| var enableZoom = 1; // 1 or 0: enable or disable zooming (default enabled) | |
| var enableDrag = 0; // 1 or 0: enable or disable dragging (default disabled) | |
| /// <==== | |
| /// END OF CONFIGURATION | |
| var root = document.documentElement; | |
| var state = 'none', svgRoot, stateTarget, stateOrigin, stateTf; | |
| setupHandlers(root); | |
| /** | |
| * Register handlers | |
| */ | |
| function setupHandlers(root){ | |
| setAttributes(root, { | |
| "onmouseup" : "handleMouseUp(evt)", | |
| "onmousedown" : "handleMouseDown(evt)", | |
| "onmousemove" : "handleMouseMove(evt)", | |
| //"onmouseout" : "handleMouseUp(evt)", // Decomment this to stop the pan functionality when dragging out of the SVG element | |
| }); | |
| if(navigator.userAgent.toLowerCase().indexOf('webkit') >= 0) | |
| window.addEventListener('mousewheel', handleMouseWheel, false); // Chrome/Safari | |
| else | |
| window.addEventListener('DOMMouseScroll', handleMouseWheel, false); // Others | |
| } | |
| /** | |
| * Retrieves the root element for SVG manipulation. The element is then cached into the svgRoot global variable. | |
| */ | |
| function getRoot(root) { | |
| if(typeof(svgRoot) == "undefined") { | |
| var g = null; | |
| g = root.getElementById("viewport"); | |
| if(g == null) | |
| g = root.getElementsByTagName('g')[0]; | |
| if(g == null) | |
| alert('Unable to obtain SVG root element'); | |
| setCTM(g, g.getCTM()); | |
| g.removeAttribute("viewBox"); | |
| svgRoot = g; | |
| } | |
| return svgRoot; | |
| } | |
| /** | |
| * Instance an SVGPoint object with given event coordinates. | |
| */ | |
| function getEventPoint(evt) { | |
| var p = root.createSVGPoint(); | |
| p.x = evt.clientX; | |
| p.y = evt.clientY; | |
| return p; | |
| } | |
| /** | |
| * Sets the current transform matrix of an element. | |
| */ | |
| function setCTM(element, matrix) { | |
| var s = "matrix(" + matrix.a + "," + matrix.b + "," + matrix.c + "," + matrix.d + "," + matrix.e + "," + matrix.f + ")"; | |
| element.setAttribute("transform", s); | |
| } | |
| /** | |
| * Dumps a matrix to a string (useful for debug). | |
| */ | |
| function dumpMatrix(matrix) { | |
| var s = "[ " + matrix.a + ", " + matrix.c + ", " + matrix.e + "\n " + matrix.b + ", " + matrix.d + ", " + matrix.f + "\n 0, 0, 1 ]"; | |
| return s; | |
| } | |
| /** | |
| * Sets attributes of an element. | |
| */ | |
| function setAttributes(element, attributes){ | |
| for (var i in attributes) | |
| element.setAttributeNS(null, i, attributes[i]); | |
| } | |
| /** | |
| * Handle mouse wheel event. | |
| */ | |
| function handleMouseWheel(evt) { | |
| if(!enableZoom) | |
| return; | |
| if(evt.preventDefault) | |
| evt.preventDefault(); | |
| evt.returnValue = false; | |
| var svgDoc = evt.target.ownerDocument; | |
| var delta; | |
| if(evt.wheelDelta) | |
| delta = evt.wheelDelta / 3600; // Chrome/Safari | |
| else | |
| delta = evt.detail / -90; // Mozilla | |
| var z = 1 + delta; // Zoom factor: 0.9/1.1 | |
| var g = getRoot(svgDoc); | |
| var p = getEventPoint(evt); | |
| p = p.matrixTransform(g.getCTM().inverse()); | |
| // Compute new scale matrix in current mouse position | |
| var k = root.createSVGMatrix().translate(p.x, p.y).scale(z).translate(-p.x, -p.y); | |
| setCTM(g, g.getCTM().multiply(k)); | |
| if(typeof(stateTf) == "undefined") | |
| stateTf = g.getCTM().inverse(); | |
| stateTf = stateTf.multiply(k.inverse()); | |
| } | |
| /** | |
| * Handle mouse move event. | |
| */ | |
| function handleMouseMove(evt) { | |
| if(evt.preventDefault) | |
| evt.preventDefault(); | |
| evt.returnValue = false; | |
| var svgDoc = evt.target.ownerDocument; | |
| var g = getRoot(svgDoc); | |
| if(state == 'pan' && enablePan) { | |
| // Pan mode | |
| var p = getEventPoint(evt).matrixTransform(stateTf); | |
| setCTM(g, stateTf.inverse().translate(p.x - stateOrigin.x, p.y - stateOrigin.y)); | |
| } else if(state == 'drag' && enableDrag) { | |
| // Drag mode | |
| var p = getEventPoint(evt).matrixTransform(g.getCTM().inverse()); | |
| setCTM(stateTarget, root.createSVGMatrix().translate(p.x - stateOrigin.x, p.y - stateOrigin.y).multiply(g.getCTM().inverse()).multiply(stateTarget.getCTM())); | |
| stateOrigin = p; | |
| } | |
| } | |
| /** | |
| * Handle click event. | |
| */ | |
| function handleMouseDown(evt) { | |
| if(evt.preventDefault) | |
| evt.preventDefault(); | |
| evt.returnValue = false; | |
| var svgDoc = evt.target.ownerDocument; | |
| var g = getRoot(svgDoc); | |
| if( | |
| evt.target.tagName == "svg" | |
| || !enableDrag // Pan anyway when drag is disabled and the user clicked on an element | |
| ) { | |
| // Pan mode | |
| state = 'pan'; | |
| stateTf = g.getCTM().inverse(); | |
| stateOrigin = getEventPoint(evt).matrixTransform(stateTf); | |
| } else { | |
| // Drag mode | |
| state = 'drag'; | |
| stateTarget = evt.target; | |
| stateTf = g.getCTM().inverse(); | |
| stateOrigin = getEventPoint(evt).matrixTransform(stateTf); | |
| } | |
| } | |
| /** | |
| * Handle mouse button release event. | |
| */ | |
| function handleMouseUp(evt) { | |
| if(evt.preventDefault) | |
| evt.preventDefault(); | |
| evt.returnValue = false; | |
| var svgDoc = evt.target.ownerDocument; | |
| if(state == 'pan' || state == 'drag') { | |
| // Quit pan mode | |
| state = ''; | |
| } | |
| } | |
| ]]></script><g id="viewport" transform="scale(0.5,0.5) translate(0,0)"><g id="graph0" class="graph" transform="scale(1 1) rotate(0) translate(4 1782)"> | |
| <title>flagstat</title> | |
| <polygon fill="white" stroke="none" points="-4,4 -4,-1782 2110.5,-1782 2110.5,4 -4,4"/> | |
| <g id="clust1" class="cluster"><title>cluster_L</title> | |
| <polygon fill="none" stroke="black" points="8,-1501 8,-1770 546,-1770 546,-1501 8,-1501"/> | |
| </g> | |
| <!-- L --> | |
| <g id="node1" class="node"><title>L</title> | |
| <polygon fill="#f8f8f8" stroke="black" points="537.5,-1762 16.5,-1762 16.5,-1509 537.5,-1509 537.5,-1762"/> | |
| <text text-anchor="start" x="24.5" y="-1732.4" font-family="Times,serif" font-size="32.00">File: flagstat</text> | |
| <text text-anchor="start" x="24.5" y="-1697.4" font-family="Times,serif" font-size="32.00">Type: cpu</text> | |
| <text text-anchor="start" x="24.5" y="-1662.4" font-family="Times,serif" font-size="32.00">Time: Feb 2, 2017 at 12:43pm (ACDT)</text> | |
| <text text-anchor="start" x="24.5" y="-1627.4" font-family="Times,serif" font-size="32.00">Duration: 5m15.012391301s</text> | |
| <text text-anchor="start" x="24.5" y="-1592.4" font-family="Times,serif" font-size="32.00">302.03s of 315.19s total (95.82%)</text> | |
| <text text-anchor="start" x="24.5" y="-1557.4" font-family="Times,serif" font-size="32.00">Dropped 220 nodes (cum <= 1.58s)</text> | |
| <text text-anchor="start" x="24.5" y="-1522.4" font-family="Times,serif" font-size="32.00">Dropped 9 edges (freq <= 0.32s)</text> | |
| </g> | |
| <!-- N1 --> | |
| <g id="node2" class="node"><title>N1</title> | |
| <g id="a_node2"><a xlink:title="compress/flate.(*decompressor).huffSym (145.55s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="806,-763 392,-763 392,-677 806,-677 806,-763"/> | |
| <text text-anchor="middle" x="599" y="-739.8" font-family="Times,serif" font-size="24.00">compress/flate.(*decompressor).huffSym</text> | |
| <text text-anchor="middle" x="599" y="-713.8" font-family="Times,serif" font-size="24.00">82.60s(26.21%)</text> | |
| <text text-anchor="middle" x="599" y="-687.8" font-family="Times,serif" font-size="24.00">of 145.55s(46.18%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N3 --> | |
| <g id="node4" class="node"><title>N3</title> | |
| <g id="a_node4"><a xlink:title="compress/flate.(*decompressor).moreBits (76.65s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="773.5,-626 424.5,-626 424.5,-552 773.5,-552 773.5,-626"/> | |
| <text text-anchor="middle" x="599" y="-606" font-family="Times,serif" font-size="20.00">compress/flate.(*decompressor).moreBits</text> | |
| <text text-anchor="middle" x="599" y="-584" font-family="Times,serif" font-size="20.00">42.01s(13.33%)</text> | |
| <text text-anchor="middle" x="599" y="-562" font-family="Times,serif" font-size="20.00">of 76.65s(24.32%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N1->N3 --> | |
| <g id="edge10" class="edge"><title>N1->N3</title> | |
| <g id="a_edge10"><a xlink:title="compress/flate.(*decompressor).huffSym -> compress/flate.(*decompressor).moreBits (62.95s)"> | |
| <path fill="none" stroke="black" d="M599,-676.761C599,-663.889 599,-649.669 599,-636.53"/> | |
| <polygon fill="black" stroke="black" points="602.5,-636.272 599,-626.272 595.5,-636.272 602.5,-636.272"/> | |
| </a> | |
| </g> | |
| <g id="a_edge10-label"><a xlink:title="compress/flate.(*decompressor).huffSym -> compress/flate.(*decompressor).moreBits (62.95s)"> | |
| <text text-anchor="middle" x="619" y="-647.8" font-family="Times,serif" font-size="14.00"> 62.95s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N2 --> | |
| <g id="node3" class="node"><title>N2</title> | |
| <g id="a_node3"><a xlink:title="compress/flate.(*decompressor).huffmanBlock (248.83s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="833,-900 365,-900 365,-814 833,-814 833,-900"/> | |
| <text text-anchor="middle" x="599" y="-876.8" font-family="Times,serif" font-size="24.00">compress/flate.(*decompressor).huffmanBlock</text> | |
| <text text-anchor="middle" x="599" y="-850.8" font-family="Times,serif" font-size="24.00">76.45s(24.26%)</text> | |
| <text text-anchor="middle" x="599" y="-824.8" font-family="Times,serif" font-size="24.00">of 248.83s(78.95%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N2->N1 --> | |
| <g id="edge8" class="edge"><title>N2->N1</title> | |
| <g id="a_edge8"><a xlink:title="compress/flate.(*decompressor).huffmanBlock -> compress/flate.(*decompressor).huffSym (143.40s)"> | |
| <path fill="none" stroke="black" stroke-width="3" d="M599,-813.656C599,-800.839 599,-786.61 599,-773.226"/> | |
| <polygon fill="black" stroke="black" stroke-width="3" points="602.5,-773.194 599,-763.194 595.5,-773.194 602.5,-773.194"/> | |
| </a> | |
| </g> | |
| <g id="a_edge8-label"><a xlink:title="compress/flate.(*decompressor).huffmanBlock -> compress/flate.(*decompressor).huffSym (143.40s)"> | |
| <text text-anchor="middle" x="622.5" y="-784.8" font-family="Times,serif" font-size="14.00"> 143.40s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N2->N3 --> | |
| <g id="edge16" class="edge"><title>N2->N3</title> | |
| <g id="a_edge16"><a xlink:title="compress/flate.(*decompressor).huffmanBlock -> compress/flate.(*decompressor).moreBits (13.57s)"> | |
| <path fill="none" stroke="black" d="M800.928,-813.985C812.774,-808.554 821.94,-802.564 827,-796 836.365,-783.852 871.977,-751.735 815,-677 800.189,-657.574 780.337,-642.471 758.647,-630.733"/> | |
| <polygon fill="black" stroke="black" points="760.079,-627.534 749.586,-626.07 756.876,-633.758 760.079,-627.534"/> | |
| </a> | |
| </g> | |
| <g id="a_edge16-label"><a xlink:title="compress/flate.(*decompressor).huffmanBlock -> compress/flate.(*decompressor).moreBits (13.57s)"> | |
| <text text-anchor="middle" x="867" y="-716.3" font-family="Times,serif" font-size="14.00"> 13.57s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N5 --> | |
| <g id="node6" class="node"><title>N5</title> | |
| <g id="a_node6"><a xlink:title="runtime.memmove (16.18s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="183.5,-611 44.5,-611 44.5,-567 183.5,-567 183.5,-611"/> | |
| <text text-anchor="middle" x="114" y="-594.2" font-family="Times,serif" font-size="16.00">runtime.memmove</text> | |
| <text text-anchor="middle" x="114" y="-576.2" font-family="Times,serif" font-size="16.00">16.18s(5.13%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N2->N5 --> | |
| <g id="edge21" class="edge"><title>N2->N5</title> | |
| <g id="a_edge21"><a xlink:title="compress/flate.(*decompressor).huffmanBlock -> runtime.memmove (11.19s)"> | |
| <path fill="none" stroke="black" d="M364.808,-837.194C261.448,-823.684 155.912,-800.912 123,-763 89.1194,-723.972 96.6691,-659.387 105.294,-621.142"/> | |
| <polygon fill="black" stroke="black" points="108.775,-621.639 107.722,-611.097 101.971,-619.995 108.775,-621.639"/> | |
| </a> | |
| </g> | |
| <g id="a_edge21-label"><a xlink:title="compress/flate.(*decompressor).huffmanBlock -> runtime.memmove (11.19s)"> | |
| <text text-anchor="middle" x="143" y="-716.3" font-family="Times,serif" font-size="14.00"> 11.19s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N10 --> | |
| <g id="node11" class="node"><title>N10</title> | |
| <g id="a_node11"><a xlink:title="compress/flate.(*dictDecoder).writeCopy (4.22s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="374,-742 172,-742 172,-698 374,-698 374,-742"/> | |
| <text text-anchor="middle" x="273" y="-729.2" font-family="Times,serif" font-size="11.00">compress/flate.(*dictDecoder).writeCopy</text> | |
| <text text-anchor="middle" x="273" y="-717.2" font-family="Times,serif" font-size="11.00">2.48s(0.79%)</text> | |
| <text text-anchor="middle" x="273" y="-705.2" font-family="Times,serif" font-size="11.00">of 4.22s(1.34%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N2->N10 --> | |
| <g id="edge30" class="edge"><title>N2->N10</title> | |
| <g id="a_edge30"><a xlink:title="compress/flate.(*decompressor).huffmanBlock -> compress/flate.(*dictDecoder).writeCopy (4.22s)"> | |
| <path fill="none" stroke="black" d="M497.193,-813.84C443.473,-791.595 379.38,-765.053 333.509,-746.057"/> | |
| <polygon fill="black" stroke="black" points="334.586,-742.715 324.007,-742.123 331.907,-749.183 334.586,-742.715"/> | |
| </a> | |
| </g> | |
| <g id="a_edge30-label"><a xlink:title="compress/flate.(*decompressor).huffmanBlock -> compress/flate.(*dictDecoder).writeCopy (4.22s)"> | |
| <text text-anchor="middle" x="463" y="-784.8" font-family="Times,serif" font-size="14.00"> 4.22s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N4 --> | |
| <g id="node5" class="node"><title>N4</title> | |
| <g id="a_node5"><a xlink:title="github.com/biogo/hts/bgzf.(*decompressor).ReadByte (34.64s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="814.5,-501 383.5,-501 383.5,-451 814.5,-451 814.5,-501"/> | |
| <text text-anchor="middle" x="599" y="-481.8" font-family="Times,serif" font-size="19.00">github.com/biogo/hts/bgzf.(*decompressor).ReadByte</text> | |
| <text text-anchor="middle" x="599" y="-460.8" font-family="Times,serif" font-size="19.00">34.64s(10.99%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N3->N4 --> | |
| <g id="edge14" class="edge"><title>N3->N4</title> | |
| <g id="a_edge14"><a xlink:title="compress/flate.(*decompressor).moreBits -> github.com/biogo/hts/bgzf.(*decompressor).ReadByte (34.64s)"> | |
| <path fill="none" stroke="black" d="M599,-551.961C599,-539.004 599,-524.426 599,-511.595"/> | |
| <polygon fill="black" stroke="black" points="602.5,-511.3 599,-501.3 595.5,-511.3 602.5,-511.3"/> | |
| </a> | |
| </g> | |
| <g id="a_edge14-label"><a xlink:title="compress/flate.(*decompressor).moreBits -> github.com/biogo/hts/bgzf.(*decompressor).ReadByte (34.64s)"> | |
| <text text-anchor="middle" x="619" y="-522.8" font-family="Times,serif" font-size="14.00"> 34.64s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N6 --> | |
| <g id="node7" class="node"><title>N6</title> | |
| <g id="a_node7"><a xlink:title="hash/crc32.slicingUpdate (11.33s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1223,-883.5 1069,-883.5 1069,-830.5 1223,-830.5 1223,-883.5"/> | |
| <text text-anchor="middle" x="1146" y="-868.3" font-family="Times,serif" font-size="14.00">hash/crc32.slicingUpdate</text> | |
| <text text-anchor="middle" x="1146" y="-853.3" font-family="Times,serif" font-size="14.00">11.21s(3.56%)</text> | |
| <text text-anchor="middle" x="1146" y="-838.3" font-family="Times,serif" font-size="14.00">of 11.33s(3.59%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N7 --> | |
| <g id="node8" class="node"><title>N7</title> | |
| <g id="a_node8"><a xlink:title="runtime.mallocgc (16.11s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1812,-501 1702,-501 1702,-451 1812,-451 1812,-501"/> | |
| <text text-anchor="middle" x="1757" y="-486.6" font-family="Times,serif" font-size="13.00">runtime.mallocgc</text> | |
| <text text-anchor="middle" x="1757" y="-472.6" font-family="Times,serif" font-size="13.00">7.88s(2.50%)</text> | |
| <text text-anchor="middle" x="1757" y="-458.6" font-family="Times,serif" font-size="13.00">of 16.11s(5.11%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N12 --> | |
| <g id="node13" class="node"><title>N12</title> | |
| <g id="a_node13"><a xlink:title="runtime.heapBitsSetType (2.24s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1927.5,-399 1798.5,-399 1798.5,-363 1927.5,-363 1927.5,-399"/> | |
| <text text-anchor="middle" x="1863" y="-384.2" font-family="Times,serif" font-size="11.00">runtime.heapBitsSetType</text> | |
| <text text-anchor="middle" x="1863" y="-372.2" font-family="Times,serif" font-size="11.00">2.24s(0.71%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N7->N12 --> | |
| <g id="edge45" class="edge"><title>N7->N12</title> | |
| <g id="a_edge45"><a xlink:title="runtime.mallocgc -> runtime.heapBitsSetType (2.24s)"> | |
| <path fill="none" stroke="black" d="M1784.57,-450.808C1800.35,-436.967 1820.06,-419.671 1835.78,-405.882"/> | |
| <polygon fill="black" stroke="black" points="1838.38,-408.254 1843.59,-399.028 1833.77,-402.992 1838.38,-408.254"/> | |
| </a> | |
| </g> | |
| <g id="a_edge45-label"><a xlink:title="runtime.mallocgc -> runtime.heapBitsSetType (2.24s)"> | |
| <text text-anchor="middle" x="1836" y="-421.8" font-family="Times,serif" font-size="14.00"> 2.24s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N13 --> | |
| <g id="node14" class="node"><title>N13</title> | |
| <g id="a_node14"><a xlink:title="runtime.memclrNoHeapPointers (2.24s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="2106.5,-399 1945.5,-399 1945.5,-363 2106.5,-363 2106.5,-399"/> | |
| <text text-anchor="middle" x="2026" y="-384.2" font-family="Times,serif" font-size="11.00">runtime.memclrNoHeapPointers</text> | |
| <text text-anchor="middle" x="2026" y="-372.2" font-family="Times,serif" font-size="11.00">2.24s(0.71%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N7->N13 --> | |
| <g id="edge62" class="edge"><title>N7->N13</title> | |
| <g id="a_edge62"><a xlink:title="runtime.mallocgc -> runtime.memclrNoHeapPointers (1.06s)"> | |
| <path fill="none" stroke="black" d="M1812.09,-455.956C1857.15,-440.377 1920.73,-418.394 1966.86,-402.447"/> | |
| <polygon fill="black" stroke="black" points="1968.12,-405.715 1976.42,-399.14 1965.83,-399.099 1968.12,-405.715"/> | |
| </a> | |
| </g> | |
| <g id="a_edge62-label"><a xlink:title="runtime.mallocgc -> runtime.memclrNoHeapPointers (1.06s)"> | |
| <text text-anchor="middle" x="1932" y="-421.8" font-family="Times,serif" font-size="14.00"> 1.06s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N33 --> | |
| <g id="node34" class="node"><title>N33</title> | |
| <g id="a_node34"><a xlink:title="runtime.(*mcache).nextFree (3.37s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1780,-400 1664,-400 1664,-362 1780,-362 1780,-400"/> | |
| <text text-anchor="middle" x="1722" y="-388.8" font-family="Times,serif" font-size="9.00">runtime.(*mcache).nextFree</text> | |
| <text text-anchor="middle" x="1722" y="-378.8" font-family="Times,serif" font-size="9.00">0.06s(0.019%)</text> | |
| <text text-anchor="middle" x="1722" y="-368.8" font-family="Times,serif" font-size="9.00">of 3.37s(1.07%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N7->N33 --> | |
| <g id="edge33" class="edge"><title>N7->N33</title> | |
| <g id="a_edge33"><a xlink:title="runtime.mallocgc -> runtime.(*mcache).nextFree (3.37s)"> | |
| <path fill="none" stroke="black" d="M1747.8,-450.565C1743.06,-437.957 1737.25,-422.531 1732.35,-409.506"/> | |
| <polygon fill="black" stroke="black" points="1735.61,-408.227 1728.81,-400.1 1729.06,-410.692 1735.61,-408.227"/> | |
| </a> | |
| </g> | |
| <g id="a_edge33-label"><a xlink:title="runtime.mallocgc -> runtime.(*mcache).nextFree (3.37s)"> | |
| <text text-anchor="middle" x="1757" y="-421.8" font-family="Times,serif" font-size="14.00"> 3.37s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N8 --> | |
| <g id="node9" class="node"><title>N8</title> | |
| <g id="a_node9"><a xlink:title="compress/flate.(*huffmanDecoder).init (5.56s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1099.5,-743.5 900.5,-743.5 900.5,-696.5 1099.5,-696.5 1099.5,-743.5"/> | |
| <text text-anchor="middle" x="1000" y="-729.9" font-family="Times,serif" font-size="12.00">compress/flate.(*huffmanDecoder).init</text> | |
| <text text-anchor="middle" x="1000" y="-716.9" font-family="Times,serif" font-size="12.00">4.58s(1.45%)</text> | |
| <text text-anchor="middle" x="1000" y="-703.9" font-family="Times,serif" font-size="12.00">of 5.56s(1.76%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N20 --> | |
| <g id="node21" class="node"><title>N20</title> | |
| <g id="a_node21"><a xlink:title="runtime.makeslice (7.09s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1728.5,-609.5 1637.5,-609.5 1637.5,-568.5 1728.5,-568.5 1728.5,-609.5"/> | |
| <text text-anchor="middle" x="1683" y="-597.5" font-family="Times,serif" font-size="10.00">runtime.makeslice</text> | |
| <text text-anchor="middle" x="1683" y="-586.5" font-family="Times,serif" font-size="10.00">0.76s(0.24%)</text> | |
| <text text-anchor="middle" x="1683" y="-575.5" font-family="Times,serif" font-size="10.00">of 7.09s(2.25%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N8->N20 --> | |
| <g id="edge64" class="edge"><title>N8->N20</title> | |
| <g id="a_edge64"><a xlink:title="compress/flate.(*huffmanDecoder).init -> runtime.makeslice (0.94s)"> | |
| <path fill="none" stroke="black" d="M1048.34,-696.428C1066.9,-688.821 1088.54,-681.201 1109,-677 1214.21,-655.396 1490.85,-695.123 1592,-659 1598.81,-656.569 1627.38,-634.524 1650.72,-615.995"/> | |
| <polygon fill="black" stroke="black" points="1653.07,-618.596 1658.71,-609.626 1648.71,-613.122 1653.07,-618.596"/> | |
| </a> | |
| </g> | |
| <g id="a_edge64-label"><a xlink:title="compress/flate.(*huffmanDecoder).init -> runtime.makeslice (0.94s)"> | |
| <text text-anchor="middle" x="1629" y="-647.8" font-family="Times,serif" font-size="14.00"> 0.94s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N9 --> | |
| <g id="node10" class="node"><title>N9</title> | |
| <g id="a_node10"><a xlink:title="github.com/biogo/hts/bam.(*Reader).Read (37.99s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="891,-1274 687,-1274 687,-1230 891,-1230 891,-1274"/> | |
| <text text-anchor="middle" x="789" y="-1261.2" font-family="Times,serif" font-size="11.00">github.com/biogo/hts/bam.(*Reader).Read</text> | |
| <text text-anchor="middle" x="789" y="-1249.2" font-family="Times,serif" font-size="11.00">2.70s(0.86%)</text> | |
| <text text-anchor="middle" x="789" y="-1237.2" font-family="Times,serif" font-size="11.00">of 37.99s(12.05%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N15 --> | |
| <g id="node16" class="node"><title>N15</title> | |
| <g id="a_node16"><a xlink:title="github.com/biogo/hts/bam.newBuffer (25.08s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="909.5,-1179 728.5,-1179 728.5,-1135 909.5,-1135 909.5,-1179"/> | |
| <text text-anchor="middle" x="819" y="-1166.2" font-family="Times,serif" font-size="11.00">github.com/biogo/hts/bam.newBuffer</text> | |
| <text text-anchor="middle" x="819" y="-1154.2" font-family="Times,serif" font-size="11.00">1.96s(0.62%)</text> | |
| <text text-anchor="middle" x="819" y="-1142.2" font-family="Times,serif" font-size="11.00">of 25.08s(7.96%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N9->N15 --> | |
| <g id="edge15" class="edge"><title>N9->N15</title> | |
| <g id="a_edge15"><a xlink:title="github.com/biogo/hts/bam.(*Reader).Read -> github.com/biogo/hts/bam.newBuffer (25.08s)"> | |
| <path fill="none" stroke="black" d="M795.807,-1229.9C799.72,-1217.77 804.705,-1202.31 809.05,-1188.85"/> | |
| <polygon fill="black" stroke="black" points="812.48,-1189.61 812.219,-1179.02 805.818,-1187.46 812.48,-1189.61"/> | |
| </a> | |
| </g> | |
| <g id="a_edge15-label"><a xlink:title="github.com/biogo/hts/bam.(*Reader).Read -> github.com/biogo/hts/bam.newBuffer (25.08s)"> | |
| <text text-anchor="middle" x="826" y="-1200.8" font-family="Times,serif" font-size="14.00"> 25.08s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N24 --> | |
| <g id="node25" class="node"><title>N24</title> | |
| <g id="a_node25"><a xlink:title="github.com/biogo/hts/bam.readCigarOps (1.85s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1521,-1177.5 1337,-1177.5 1337,-1136.5 1521,-1136.5 1521,-1177.5"/> | |
| <text text-anchor="middle" x="1429" y="-1165.5" font-family="Times,serif" font-size="10.00">github.com/biogo/hts/bam.readCigarOps</text> | |
| <text text-anchor="middle" x="1429" y="-1154.5" font-family="Times,serif" font-size="10.00">0.51s(0.16%)</text> | |
| <text text-anchor="middle" x="1429" y="-1143.5" font-family="Times,serif" font-size="10.00">of 1.85s(0.59%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N9->N24 --> | |
| <g id="edge57" class="edge"><title>N9->N24</title> | |
| <g id="a_edge57"><a xlink:title="github.com/biogo/hts/bam.(*Reader).Read -> github.com/biogo/hts/bam.readCigarOps (1.85s)"> | |
| <path fill="none" stroke="black" d="M891.181,-1231.46C894.152,-1230.96 897.096,-1230.47 900,-1230 1047.79,-1205.98 1219.7,-1183.6 1326.44,-1170.36"/> | |
| <polygon fill="black" stroke="black" points="1327.07,-1173.81 1336.57,-1169.11 1326.21,-1166.87 1327.07,-1173.81"/> | |
| </a> | |
| </g> | |
| <g id="a_edge57-label"><a xlink:title="github.com/biogo/hts/bam.(*Reader).Read -> github.com/biogo/hts/bam.readCigarOps (1.85s)"> | |
| <text text-anchor="middle" x="1135" y="-1200.8" font-family="Times,serif" font-size="14.00"> 1.85s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N26 --> | |
| <g id="node27" class="node"><title>N26</title> | |
| <g id="a_node27"><a xlink:title="runtime.newobject (8.05s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1803.5,-1084 1710.5,-1084 1710.5,-1043 1803.5,-1043 1803.5,-1084"/> | |
| <text text-anchor="middle" x="1757" y="-1072" font-family="Times,serif" font-size="10.00">runtime.newobject</text> | |
| <text text-anchor="middle" x="1757" y="-1061" font-family="Times,serif" font-size="10.00">0.35s(0.11%)</text> | |
| <text text-anchor="middle" x="1757" y="-1050" font-family="Times,serif" font-size="10.00">of 8.05s(2.55%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N9->N26 --> | |
| <g id="edge28" class="edge"><title>N9->N26</title> | |
| <g id="a_edge28"><a xlink:title="github.com/biogo/hts/bam.(*Reader).Read -> runtime.newobject (5.01s)"> | |
| <path fill="none" stroke="black" d="M891.144,-1231.21C894.126,-1230.78 897.082,-1230.38 900,-1230 1178.6,-1193.98 1254.26,-1232.66 1530,-1179 1622.6,-1160.98 1662.03,-1179.15 1733,-1117 1740.07,-1110.81 1745.18,-1102.12 1748.81,-1093.58"/> | |
| <polygon fill="black" stroke="black" points="1752.11,-1094.75 1752.32,-1084.15 1745.55,-1092.31 1752.11,-1094.75"/> | |
| </a> | |
| </g> | |
| <g id="a_edge28-label"><a xlink:title="github.com/biogo/hts/bam.(*Reader).Read -> runtime.newobject (5.01s)"> | |
| <text text-anchor="middle" x="1725" y="-1153.3" font-family="Times,serif" font-size="14.00"> 5.01s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N27 --> | |
| <g id="node28" class="node"><title>N27</title> | |
| <g id="a_node28"><a xlink:title="runtime.slicebytetostring (3.10s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1916,-1176 1812,-1176 1812,-1138 1916,-1138 1916,-1176"/> | |
| <text text-anchor="middle" x="1864" y="-1164.8" font-family="Times,serif" font-size="9.00">runtime.slicebytetostring</text> | |
| <text text-anchor="middle" x="1864" y="-1154.8" font-family="Times,serif" font-size="9.00">0.30s(0.095%)</text> | |
| <text text-anchor="middle" x="1864" y="-1144.8" font-family="Times,serif" font-size="9.00">of 3.10s(0.98%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N9->N27 --> | |
| <g id="edge35" class="edge"><title>N9->N27</title> | |
| <g id="a_edge35"><a xlink:title="github.com/biogo/hts/bam.(*Reader).Read -> runtime.slicebytetostring (3.10s)"> | |
| <path fill="none" stroke="black" d="M891.122,-1231.02C894.11,-1230.65 897.074,-1230.3 900,-1230 996.277,-1219.97 1677.8,-1238.13 1771,-1212 1792.89,-1205.86 1815,-1193.34 1832.16,-1181.91"/> | |
| <polygon fill="black" stroke="black" points="1834.41,-1184.61 1840.66,-1176.06 1830.44,-1178.84 1834.41,-1184.61"/> | |
| </a> | |
| </g> | |
| <g id="a_edge35-label"><a xlink:title="github.com/biogo/hts/bam.(*Reader).Read -> runtime.slicebytetostring (3.10s)"> | |
| <text text-anchor="middle" x="1823" y="-1200.8" font-family="Times,serif" font-size="14.00"> 3.10s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N10->N5 --> | |
| <g id="edge58" class="edge"><title>N10->N5</title> | |
| <g id="a_edge58"><a xlink:title="compress/flate.(*dictDecoder).writeCopy -> runtime.memmove (1.74s)"> | |
| <path fill="none" stroke="black" d="M247.1,-697.987C220.074,-676.06 177.579,-641.583 147.897,-617.502"/> | |
| <polygon fill="black" stroke="black" points="149.86,-614.587 139.889,-611.004 145.449,-620.023 149.86,-614.587"/> | |
| </a> | |
| </g> | |
| <g id="a_edge58-label"><a xlink:title="compress/flate.(*dictDecoder).writeCopy -> runtime.memmove (1.74s)"> | |
| <text text-anchor="middle" x="216" y="-647.8" font-family="Times,serif" font-size="14.00"> 1.74s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N11 --> | |
| <g id="node12" class="node"><title>N11</title> | |
| <g id="a_node12"><a xlink:title="main.main (40.43s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="834,-1369 736,-1369 736,-1325 834,-1325 834,-1369"/> | |
| <text text-anchor="middle" x="785" y="-1356.2" font-family="Times,serif" font-size="11.00">main.main</text> | |
| <text text-anchor="middle" x="785" y="-1344.2" font-family="Times,serif" font-size="11.00">2.44s(0.77%)</text> | |
| <text text-anchor="middle" x="785" y="-1332.2" font-family="Times,serif" font-size="11.00">of 40.43s(12.83%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N11->N9 --> | |
| <g id="edge13" class="edge"><title>N11->N9</title> | |
| <g id="a_edge13"><a xlink:title="main.main -> github.com/biogo/hts/bam.(*Reader).Read (37.99s)"> | |
| <path fill="none" stroke="black" d="M785.908,-1324.9C786.424,-1312.89 787.081,-1297.62 787.656,-1284.24"/> | |
| <polygon fill="black" stroke="black" points="791.163,-1284.16 788.096,-1274.02 784.169,-1283.86 791.163,-1284.16"/> | |
| </a> | |
| </g> | |
| <g id="a_edge13-label"><a xlink:title="main.main -> github.com/biogo/hts/bam.(*Reader).Read (37.99s)"> | |
| <text text-anchor="middle" x="808" y="-1295.8" font-family="Times,serif" font-size="14.00"> 37.99s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N14 --> | |
| <g id="node15" class="node"><title>N14</title> | |
| <g id="a_node15"><a xlink:title="syscall.Syscall (2.12s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1622.5,-222 1535.5,-222 1535.5,-178 1622.5,-178 1622.5,-222"/> | |
| <text text-anchor="middle" x="1579" y="-209.2" font-family="Times,serif" font-size="11.00">syscall.Syscall</text> | |
| <text text-anchor="middle" x="1579" y="-197.2" font-family="Times,serif" font-size="11.00">2.03s(0.64%)</text> | |
| <text text-anchor="middle" x="1579" y="-185.2" font-family="Times,serif" font-size="11.00">of 2.12s(0.67%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N19 --> | |
| <g id="node20" class="node"><title>N19</title> | |
| <g id="a_node20"><a xlink:title="runtime.deferreturn (2.14s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="993.5,-1084 898.5,-1084 898.5,-1043 993.5,-1043 993.5,-1084"/> | |
| <text text-anchor="middle" x="946" y="-1072" font-family="Times,serif" font-size="10.00">runtime.deferreturn</text> | |
| <text text-anchor="middle" x="946" y="-1061" font-family="Times,serif" font-size="10.00">0.90s(0.29%)</text> | |
| <text text-anchor="middle" x="946" y="-1050" font-family="Times,serif" font-size="10.00">of 2.14s(0.68%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N15->N19 --> | |
| <g id="edge56" class="edge"><title>N15->N19</title> | |
| <g id="a_edge56"><a xlink:title="github.com/biogo/hts/bam.newBuffer -> runtime.deferreturn (2.06s)"> | |
| <path fill="none" stroke="black" d="M849.023,-1134.82C857.145,-1129.06 865.922,-1122.81 874,-1117 886.128,-1108.28 899.351,-1098.67 911.117,-1090.08"/> | |
| <polygon fill="black" stroke="black" points="913.382,-1092.76 919.391,-1084.03 909.252,-1087.11 913.382,-1092.76"/> | |
| </a> | |
| </g> | |
| <g id="a_edge56-label"><a xlink:title="github.com/biogo/hts/bam.newBuffer -> runtime.deferreturn (2.06s)"> | |
| <text text-anchor="middle" x="911" y="-1105.8" font-family="Times,serif" font-size="14.00"> 2.06s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N15->N20 --> | |
| <g id="edge29" class="edge"><title>N15->N20</title> | |
| <g id="a_edge29"><a xlink:title="github.com/biogo/hts/bam.newBuffer -> runtime.makeslice (4.77s)"> | |
| <path fill="none" stroke="black" d="M909.597,-1140.52C1103.36,-1105.5 1548.21,-1014.29 1644,-900 1679.22,-857.972 1683.14,-688.967 1683.22,-619.767"/> | |
| <polygon fill="black" stroke="black" points="1686.72,-619.548 1683.21,-609.553 1679.72,-619.558 1686.72,-619.548"/> | |
| </a> | |
| </g> | |
| <g id="a_edge29-label"><a xlink:title="github.com/biogo/hts/bam.newBuffer -> runtime.makeslice (4.77s)"> | |
| <text text-anchor="middle" x="1642" y="-921.8" font-family="Times,serif" font-size="14.00"> 4.77s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N23 --> | |
| <g id="node24" class="node"><title>N23</title> | |
| <g id="a_node24"><a xlink:title="io.ReadFull (11.22s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="880,-1084 794,-1084 794,-1043 880,-1043 880,-1084"/> | |
| <text text-anchor="middle" x="837" y="-1072" font-family="Times,serif" font-size="10.00">io.ReadFull</text> | |
| <text text-anchor="middle" x="837" y="-1061" font-family="Times,serif" font-size="10.00">0.62s(0.2%)</text> | |
| <text text-anchor="middle" x="837" y="-1050" font-family="Times,serif" font-size="10.00">of 11.22s(3.56%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N15->N23 --> | |
| <g id="edge20" class="edge"><title>N15->N23</title> | |
| <g id="a_edge20"><a xlink:title="github.com/biogo/hts/bam.newBuffer -> io.ReadFull (11.20s)"> | |
| <path fill="none" stroke="black" d="M823.175,-1134.78C825.551,-1122.7 828.565,-1107.38 831.172,-1094.13"/> | |
| <polygon fill="black" stroke="black" points="834.659,-1094.53 833.155,-1084.04 827.791,-1093.18 834.659,-1094.53"/> | |
| </a> | |
| </g> | |
| <g id="a_edge20-label"><a xlink:title="github.com/biogo/hts/bam.newBuffer -> io.ReadFull (11.20s)"> | |
| <text text-anchor="middle" x="850" y="-1105.8" font-family="Times,serif" font-size="14.00"> 11.20s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N15->N26 --> | |
| <g id="edge37" class="edge"><title>N15->N26</title> | |
| <g id="a_edge37"><a xlink:title="github.com/biogo/hts/bam.newBuffer -> runtime.newobject (2.95s)"> | |
| <path fill="none" stroke="black" d="M909.699,-1152.31C1123.05,-1143.54 1640.16,-1121.88 1658,-1117 1679.41,-1111.14 1701.41,-1100.08 1719.21,-1089.61"/> | |
| <polygon fill="black" stroke="black" points="1721.37,-1092.39 1728.11,-1084.22 1717.74,-1086.4 1721.37,-1092.39"/> | |
| </a> | |
| </g> | |
| <g id="a_edge37-label"><a xlink:title="github.com/biogo/hts/bam.newBuffer -> runtime.newobject (2.95s)"> | |
| <text text-anchor="middle" x="1712" y="-1105.8" font-family="Times,serif" font-size="14.00"> 2.95s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N16 --> | |
| <g id="node17" class="node"><title>N16</title> | |
| <g id="a_node17"><a xlink:title="github.com/biogo/hts/bgzf.(*Reader).Read (9.59s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1446.5,-879 1241.5,-879 1241.5,-835 1446.5,-835 1446.5,-879"/> | |
| <text text-anchor="middle" x="1344" y="-866.2" font-family="Times,serif" font-size="11.00">github.com/biogo/hts/bgzf.(*Reader).Read</text> | |
| <text text-anchor="middle" x="1344" y="-854.2" font-family="Times,serif" font-size="11.00">1.52s(0.48%)</text> | |
| <text text-anchor="middle" x="1344" y="-842.2" font-family="Times,serif" font-size="11.00">of 9.59s(3.04%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N17 --> | |
| <g id="node18" class="node"><title>N17</title> | |
| <g id="a_node18"><a xlink:title="github.com/biogo/hts/bgzf.(*block).Read (2.61s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1304,-740.5 1118,-740.5 1118,-699.5 1304,-699.5 1304,-740.5"/> | |
| <text text-anchor="middle" x="1211" y="-728.5" font-family="Times,serif" font-size="10.00">github.com/biogo/hts/bgzf.(*block).Read</text> | |
| <text text-anchor="middle" x="1211" y="-717.5" font-family="Times,serif" font-size="10.00">1.10s(0.35%)</text> | |
| <text text-anchor="middle" x="1211" y="-706.5" font-family="Times,serif" font-size="10.00">of 2.61s(0.83%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N16->N17 --> | |
| <g id="edge40" class="edge"><title>N16->N17</title> | |
| <g id="a_edge40"><a xlink:title="github.com/biogo/hts/bgzf.(*Reader).Read -> github.com/biogo/hts/bgzf.(*block).Read (2.61s)"> | |
| <path fill="none" stroke="black" d="M1323.22,-834.906C1300.08,-811.418 1262.62,-773.399 1237.42,-747.817"/> | |
| <polygon fill="black" stroke="black" points="1239.85,-745.297 1230.34,-740.63 1234.86,-750.21 1239.85,-745.297"/> | |
| </a> | |
| </g> | |
| <g id="a_edge40-label"><a xlink:title="github.com/biogo/hts/bgzf.(*Reader).Read -> github.com/biogo/hts/bgzf.(*block).Read (2.61s)"> | |
| <text text-anchor="middle" x="1299" y="-784.8" font-family="Times,serif" font-size="14.00"> 2.61s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N35 --> | |
| <g id="node36" class="node"><title>N35</title> | |
| <g id="a_node36"><a xlink:title="github.com/biogo/hts/bgzf.(*Reader).nextBlock (3.98s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1506.5,-739 1321.5,-739 1321.5,-701 1506.5,-701 1506.5,-739"/> | |
| <text text-anchor="middle" x="1414" y="-727.8" font-family="Times,serif" font-size="9.00">github.com/biogo/hts/bgzf.(*Reader).nextBlock</text> | |
| <text text-anchor="middle" x="1414" y="-717.8" font-family="Times,serif" font-size="9.00">0.05s(0.016%)</text> | |
| <text text-anchor="middle" x="1414" y="-707.8" font-family="Times,serif" font-size="9.00">of 3.98s(1.26%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N16->N35 --> | |
| <g id="edge31" class="edge"><title>N16->N35</title> | |
| <g id="a_edge31"><a xlink:title="github.com/biogo/hts/bgzf.(*Reader).Read -> github.com/biogo/hts/bgzf.(*Reader).nextBlock (3.98s)"> | |
| <path fill="none" stroke="black" d="M1354.94,-834.906C1367.01,-811.628 1386.48,-774.079 1399.74,-748.507"/> | |
| <polygon fill="black" stroke="black" points="1402.99,-749.836 1404.49,-739.347 1396.78,-746.614 1402.99,-749.836"/> | |
| </a> | |
| </g> | |
| <g id="a_edge31-label"><a xlink:title="github.com/biogo/hts/bgzf.(*Reader).Read -> github.com/biogo/hts/bgzf.(*Reader).nextBlock (3.98s)"> | |
| <text text-anchor="middle" x="1399" y="-784.8" font-family="Times,serif" font-size="14.00"> 3.98s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N17->N5 --> | |
| <g id="edge59" class="edge"><title>N17->N5</title> | |
| <g id="a_edge59"><a xlink:title="github.com/biogo/hts/bgzf.(*block).Read -> runtime.memmove (1.51s)"> | |
| <path fill="none" stroke="black" d="M1171.36,-699.426C1152.6,-691.06 1129.62,-682.07 1108,-677 807.322,-606.496 722.404,-655.679 415,-626 339.852,-618.745 254.41,-608.317 193.806,-600.55"/> | |
| <polygon fill="black" stroke="black" points="193.909,-597.034 183.544,-599.229 193.016,-603.977 193.909,-597.034"/> | |
| </a> | |
| </g> | |
| <g id="a_edge59-label"><a xlink:title="github.com/biogo/hts/bgzf.(*block).Read -> runtime.memmove (1.51s)"> | |
| <text text-anchor="middle" x="1026" y="-647.8" font-family="Times,serif" font-size="14.00"> 1.51s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N18 --> | |
| <g id="node19" class="node"><title>N18</title> | |
| <g id="a_node19"><a xlink:title="io.ReadAtLeast (10.62s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1227,-992 1141,-992 1141,-951 1227,-951 1227,-992"/> | |
| <text text-anchor="middle" x="1184" y="-980" font-family="Times,serif" font-size="10.00">io.ReadAtLeast</text> | |
| <text text-anchor="middle" x="1184" y="-969" font-family="Times,serif" font-size="10.00">1.07s(0.34%)</text> | |
| <text text-anchor="middle" x="1184" y="-958" font-family="Times,serif" font-size="10.00">of 10.62s(3.37%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N18->N16 --> | |
| <g id="edge25" class="edge"><title>N18->N16</title> | |
| <g id="a_edge25"><a xlink:title="io.ReadAtLeast -> github.com/biogo/hts/bgzf.(*Reader).Read (7.23s)"> | |
| <path fill="none" stroke="black" d="M1211.87,-950.904C1237.86,-932.626 1276.87,-905.203 1305.76,-884.884"/> | |
| <polygon fill="black" stroke="black" points="1307.84,-887.705 1314,-879.09 1303.81,-881.979 1307.84,-887.705"/> | |
| </a> | |
| </g> | |
| <g id="a_edge25-label"><a xlink:title="io.ReadAtLeast -> github.com/biogo/hts/bgzf.(*Reader).Read (7.23s)"> | |
| <text text-anchor="middle" x="1272" y="-921.8" font-family="Times,serif" font-size="14.00"> 7.23s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N48 --> | |
| <g id="node49" class="node"><title>N48</title> | |
| <g id="a_node49"><a xlink:title="github.com/biogo/hts/bgzf.(*countReader).Read (2.31s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1635,-875 1465,-875 1465,-839 1635,-839 1635,-875"/> | |
| <text text-anchor="middle" x="1550" y="-859.6" font-family="Times,serif" font-size="8.00">github.com/biogo/hts/bgzf.(*countReader).Read</text> | |
| <text text-anchor="middle" x="1550" y="-850.6" font-family="Times,serif" font-size="8.00">0 of 2.31s(0.73%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N18->N48 --> | |
| <g id="edge60" class="edge"><title>N18->N48</title> | |
| <g id="a_edge60"><a xlink:title="io.ReadAtLeast -> github.com/biogo/hts/bgzf.(*countReader).Read (1.51s)"> | |
| <path fill="none" stroke="black" d="M1227.35,-961.497C1281.4,-949.756 1376.27,-927.441 1455,-900 1471.78,-894.151 1489.72,-886.581 1505.44,-879.482"/> | |
| <polygon fill="black" stroke="black" points="1507.28,-882.491 1514.91,-875.143 1504.36,-876.127 1507.28,-882.491"/> | |
| </a> | |
| </g> | |
| <g id="a_edge60-label"><a xlink:title="io.ReadAtLeast -> github.com/biogo/hts/bgzf.(*countReader).Read (1.51s)"> | |
| <text text-anchor="middle" x="1414" y="-921.8" font-family="Times,serif" font-size="14.00"> 1.51s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N20->N7 --> | |
| <g id="edge26" class="edge"><title>N20->N7</title> | |
| <g id="a_edge26"><a xlink:title="runtime.makeslice -> runtime.mallocgc (6.33s)"> | |
| <path fill="none" stroke="black" d="M1687.63,-568.331C1691.68,-553.811 1698.57,-534.045 1709,-519 1711.55,-515.317 1714.5,-511.749 1717.65,-508.352"/> | |
| <polygon fill="black" stroke="black" points="1720.2,-510.752 1724.8,-501.208 1715.25,-505.801 1720.2,-510.752"/> | |
| </a> | |
| </g> | |
| <g id="a_edge26-label"><a xlink:title="runtime.makeslice -> runtime.mallocgc (6.33s)"> | |
| <text text-anchor="middle" x="1726" y="-522.8" font-family="Times,serif" font-size="14.00"> 6.33s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N21 --> | |
| <g id="node22" class="node"><title>N21</title> | |
| <g id="a_node22"><a xlink:title="runtime.pcvalue (1.58s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="822.5,-1656 739.5,-1656 739.5,-1615 822.5,-1615 822.5,-1656"/> | |
| <text text-anchor="middle" x="781" y="-1644" font-family="Times,serif" font-size="10.00">runtime.pcvalue</text> | |
| <text text-anchor="middle" x="781" y="-1633" font-family="Times,serif" font-size="10.00">0.67s(0.21%)</text> | |
| <text text-anchor="middle" x="781" y="-1622" font-family="Times,serif" font-size="10.00">of 1.58s(0.5%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N22 --> | |
| <g id="node23" class="node"><title>N22</title> | |
| <g id="a_node23"><a xlink:title="compress/flate.(*decompressor).readHuffman (8.42s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1051,-877.5 851,-877.5 851,-836.5 1051,-836.5 1051,-877.5"/> | |
| <text text-anchor="middle" x="951" y="-865.5" font-family="Times,serif" font-size="10.00">compress/flate.(*decompressor).readHuffman</text> | |
| <text text-anchor="middle" x="951" y="-854.5" font-family="Times,serif" font-size="10.00">0.63s(0.2%)</text> | |
| <text text-anchor="middle" x="951" y="-843.5" font-family="Times,serif" font-size="10.00">of 8.42s(2.67%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N22->N1 --> | |
| <g id="edge49" class="edge"><title>N22->N1</title> | |
| <g id="a_edge49"><a xlink:title="compress/flate.(*decompressor).readHuffman -> compress/flate.(*decompressor).huffSym (2.15s)"> | |
| <path fill="none" stroke="black" d="M900.267,-836.424C881.913,-829.349 861.027,-821.307 842,-814 801.789,-798.558 757.82,-781.717 718.47,-766.661"/> | |
| <polygon fill="black" stroke="black" points="719.69,-763.381 709.1,-763.076 717.189,-769.919 719.69,-763.381"/> | |
| </a> | |
| </g> | |
| <g id="a_edge49-label"><a xlink:title="compress/flate.(*decompressor).readHuffman -> compress/flate.(*decompressor).huffSym (2.15s)"> | |
| <text text-anchor="middle" x="806" y="-784.8" font-family="Times,serif" font-size="14.00"> 2.15s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N22->N8 --> | |
| <g id="edge27" class="edge"><title>N22->N8</title> | |
| <g id="a_edge27"><a xlink:title="compress/flate.(*decompressor).readHuffman -> compress/flate.(*huffmanDecoder).init (5.56s)"> | |
| <path fill="none" stroke="black" d="M958.125,-836.37C965.998,-814.678 978.804,-779.397 988.184,-753.554"/> | |
| <polygon fill="black" stroke="black" points="991.597,-754.409 991.719,-743.815 985.017,-752.021 991.597,-754.409"/> | |
| </a> | |
| </g> | |
| <g id="a_edge27-label"><a xlink:title="compress/flate.(*decompressor).readHuffman -> compress/flate.(*huffmanDecoder).init (5.56s)"> | |
| <text text-anchor="middle" x="994" y="-784.8" font-family="Times,serif" font-size="14.00"> 5.56s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N23->N18 --> | |
| <g id="edge22" class="edge"><title>N23->N18</title> | |
| <g id="a_edge22"><a xlink:title="io.ReadFull -> io.ReadAtLeast (10.60s)"> | |
| <path fill="none" stroke="black" d="M880.273,-1045.81C883.213,-1044.82 886.142,-1043.87 889,-1043 972.306,-1017.53 1071.13,-995.541 1130.64,-983.166"/> | |
| <polygon fill="black" stroke="black" points="1131.47,-986.568 1140.56,-981.116 1130.06,-979.712 1131.47,-986.568"/> | |
| </a> | |
| </g> | |
| <g id="a_edge22-label"><a xlink:title="io.ReadFull -> io.ReadAtLeast (10.60s)"> | |
| <text text-anchor="middle" x="1030" y="-1013.8" font-family="Times,serif" font-size="14.00"> 10.60s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N24->N20 --> | |
| <g id="edge61" class="edge"><title>N24->N20</title> | |
| <g id="a_edge61"><a xlink:title="github.com/biogo/hts/bam.readCigarOps -> runtime.makeslice (1.34s)"> | |
| <path fill="none" stroke="black" d="M1517.75,-1136.5C1520.53,-1135.98 1523.28,-1135.48 1526,-1135 1555.16,-1129.86 1637.3,-1138.16 1658,-1117 1727.07,-1046.41 1697.51,-720.804 1686.48,-619.899"/> | |
| <polygon fill="black" stroke="black" points="1689.94,-619.338 1685.35,-609.787 1682.98,-620.113 1689.94,-619.338"/> | |
| </a> | |
| </g> | |
| <g id="a_edge61-label"><a xlink:title="github.com/biogo/hts/bam.readCigarOps -> runtime.makeslice (1.34s)"> | |
| <text text-anchor="middle" x="1718" y="-921.8" font-family="Times,serif" font-size="14.00"> 1.34s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N25 --> | |
| <g id="node26" class="node"><title>N25</title> | |
| <g id="a_node26"><a xlink:title="runtime.gentraceback (2.82s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1013,-1272.5 909,-1272.5 909,-1231.5 1013,-1231.5 1013,-1272.5"/> | |
| <text text-anchor="middle" x="961" y="-1260.5" font-family="Times,serif" font-size="10.00">runtime.gentraceback</text> | |
| <text text-anchor="middle" x="961" y="-1249.5" font-family="Times,serif" font-size="10.00">0.44s(0.14%)</text> | |
| <text text-anchor="middle" x="961" y="-1238.5" font-family="Times,serif" font-size="10.00">of 2.82s(0.89%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N26->N7 --> | |
| <g id="edge24" class="edge"><title>N26->N7</title> | |
| <g id="a_edge24"><a xlink:title="runtime.newobject -> runtime.mallocgc (7.70s)"> | |
| <path fill="none" stroke="black" d="M1757,-1042.84C1757,-1024.6 1757,-996.719 1757,-972.5 1757,-972.5 1757,-972.5 1757,-588 1757,-562.331 1757,-533.322 1757,-511.399"/> | |
| <polygon fill="black" stroke="black" points="1760.5,-511.252 1757,-501.252 1753.5,-511.252 1760.5,-511.252"/> | |
| </a> | |
| </g> | |
| <g id="a_edge24-label"><a xlink:title="runtime.newobject -> runtime.mallocgc (7.70s)"> | |
| <text text-anchor="middle" x="1774" y="-784.8" font-family="Times,serif" font-size="14.00"> 7.70s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N31 --> | |
| <g id="node32" class="node"><title>N31</title> | |
| <g id="a_node32"><a xlink:title="runtime.rawstringtmp (2.55s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1914.5,-1082.5 1821.5,-1082.5 1821.5,-1044.5 1914.5,-1044.5 1914.5,-1082.5"/> | |
| <text text-anchor="middle" x="1868" y="-1071.3" font-family="Times,serif" font-size="9.00">runtime.rawstringtmp</text> | |
| <text text-anchor="middle" x="1868" y="-1061.3" font-family="Times,serif" font-size="9.00">0.21s(0.067%)</text> | |
| <text text-anchor="middle" x="1868" y="-1051.3" font-family="Times,serif" font-size="9.00">of 2.55s(0.81%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N27->N31 --> | |
| <g id="edge41" class="edge"><title>N27->N31</title> | |
| <g id="a_edge41"><a xlink:title="runtime.slicebytetostring -> runtime.rawstringtmp (2.55s)"> | |
| <path fill="none" stroke="black" d="M1864.79,-1137.92C1865.35,-1125.01 1866.12,-1107.4 1866.77,-1092.66"/> | |
| <polygon fill="black" stroke="black" points="1870.27,-1092.68 1867.21,-1082.54 1863.28,-1092.38 1870.27,-1092.68"/> | |
| </a> | |
| </g> | |
| <g id="a_edge41-label"><a xlink:title="runtime.slicebytetostring -> runtime.rawstringtmp (2.55s)"> | |
| <text text-anchor="middle" x="1883" y="-1105.8" font-family="Times,serif" font-size="14.00"> 2.55s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N28 --> | |
| <g id="node29" class="node"><title>N28</title> | |
| <g id="a_node29"><a xlink:title="runtime.rawstring (2.34s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1876,-990.5 1796,-990.5 1796,-952.5 1876,-952.5 1876,-990.5"/> | |
| <text text-anchor="middle" x="1836" y="-979.3" font-family="Times,serif" font-size="9.00">runtime.rawstring</text> | |
| <text text-anchor="middle" x="1836" y="-969.3" font-family="Times,serif" font-size="9.00">0.26s(0.082%)</text> | |
| <text text-anchor="middle" x="1836" y="-959.3" font-family="Times,serif" font-size="9.00">of 2.34s(0.74%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N28->N7 --> | |
| <g id="edge55" class="edge"><title>N28->N7</title> | |
| <g id="a_edge55"><a xlink:title="runtime.rawstring -> runtime.mallocgc (2.08s)"> | |
| <path fill="none" stroke="black" d="M1832.06,-952.283C1827.61,-930.116 1821,-891.497 1821,-858 1821,-858 1821,-858 1821,-588 1821,-558.543 1803.88,-529.86 1787.34,-509.033"/> | |
| <polygon fill="black" stroke="black" points="1789.91,-506.64 1780.83,-501.17 1784.51,-511.105 1789.91,-506.64"/> | |
| </a> | |
| </g> | |
| <g id="a_edge55-label"><a xlink:title="runtime.rawstring -> runtime.mallocgc (2.08s)"> | |
| <text text-anchor="middle" x="1838" y="-716.3" font-family="Times,serif" font-size="14.00"> 2.08s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N29 --> | |
| <g id="node30" class="node"><title>N29</title> | |
| <g id="a_node30"><a xlink:title="runtime.(*mcentral).cacheSpan (2.21s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1785,-38 1659,-38 1659,-0 1785,-0 1785,-38"/> | |
| <text text-anchor="middle" x="1722" y="-26.8" font-family="Times,serif" font-size="9.00">runtime.(*mcentral).cacheSpan</text> | |
| <text text-anchor="middle" x="1722" y="-16.8" font-family="Times,serif" font-size="9.00">0.24s(0.076%)</text> | |
| <text text-anchor="middle" x="1722" y="-6.8" font-family="Times,serif" font-size="9.00">of 2.21s(0.7%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N30 --> | |
| <g id="node31" class="node"><title>N30</title> | |
| <g id="a_node31"><a xlink:title="runtime.systemstack (6.71s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1766.5,-311 1677.5,-311 1677.5,-273 1766.5,-273 1766.5,-311"/> | |
| <text text-anchor="middle" x="1722" y="-299.8" font-family="Times,serif" font-size="9.00">runtime.systemstack</text> | |
| <text text-anchor="middle" x="1722" y="-289.8" font-family="Times,serif" font-size="9.00">0.23s(0.073%)</text> | |
| <text text-anchor="middle" x="1722" y="-279.8" font-family="Times,serif" font-size="9.00">of 6.71s(2.13%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N47 --> | |
| <g id="node48" class="node"><title>N47</title> | |
| <g id="a_node48"><a xlink:title="runtime.(*mcache).nextFree.func1 (2.24s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1791,-219 1653,-219 1653,-181 1791,-181 1791,-219"/> | |
| <text text-anchor="middle" x="1722" y="-207.8" font-family="Times,serif" font-size="9.00">runtime.(*mcache).nextFree.func1</text> | |
| <text text-anchor="middle" x="1722" y="-197.8" font-family="Times,serif" font-size="9.00">0.01s(0.0032%)</text> | |
| <text text-anchor="middle" x="1722" y="-187.8" font-family="Times,serif" font-size="9.00">of 2.24s(0.71%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N30->N47 --> | |
| <g id="edge46" class="edge"><title>N30->N47</title> | |
| <g id="a_edge46"><a xlink:title="runtime.systemstack -> runtime.(*mcache).nextFree.func1 (2.24s)"> | |
| <path fill="none" stroke="black" d="M1722,-272.787C1722,-260.344 1722,-243.605 1722,-229.421"/> | |
| <polygon fill="black" stroke="black" points="1725.5,-229.186 1722,-219.186 1718.5,-229.186 1725.5,-229.186"/> | |
| </a> | |
| </g> | |
| <g id="a_edge46-label"><a xlink:title="runtime.systemstack -> runtime.(*mcache).nextFree.func1 (2.24s)"> | |
| <text text-anchor="middle" x="1739" y="-243.8" font-family="Times,serif" font-size="14.00"> 2.24s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N31->N28 --> | |
| <g id="edge43" class="edge"><title>N31->N28</title> | |
| <g id="a_edge43"><a xlink:title="runtime.rawstringtmp -> runtime.rawstring (2.34s)"> | |
| <path fill="none" stroke="black" d="M1861.52,-1044.29C1857.06,-1031.72 1851.03,-1014.78 1845.96,-1000.5"/> | |
| <polygon fill="black" stroke="black" points="1849.11,-998.935 1842.47,-990.686 1842.52,-1001.28 1849.11,-998.935"/> | |
| </a> | |
| </g> | |
| <g id="a_edge43-label"><a xlink:title="runtime.rawstringtmp -> runtime.rawstring (2.34s)"> | |
| <text text-anchor="middle" x="1870" y="-1013.8" font-family="Times,serif" font-size="14.00"> 2.34s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N32 --> | |
| <g id="node33" class="node"><title>N32</title> | |
| <g id="a_node33"><a xlink:title="bufio.(*Reader).Read (2.31s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1617.5,-739 1524.5,-739 1524.5,-701 1617.5,-701 1617.5,-739"/> | |
| <text text-anchor="middle" x="1571" y="-727.8" font-family="Times,serif" font-size="9.00">bufio.(*Reader).Read</text> | |
| <text text-anchor="middle" x="1571" y="-717.8" font-family="Times,serif" font-size="9.00">0.09s(0.029%)</text> | |
| <text text-anchor="middle" x="1571" y="-707.8" font-family="Times,serif" font-size="9.00">of 2.31s(0.73%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N52 --> | |
| <g id="node53" class="node"><title>N52</title> | |
| <g id="a_node53"><a xlink:title="os.(*File).Read (2.14s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1616,-607 1542,-607 1542,-571 1616,-571 1616,-607"/> | |
| <text text-anchor="middle" x="1579" y="-591.6" font-family="Times,serif" font-size="8.00">os.(*File).Read</text> | |
| <text text-anchor="middle" x="1579" y="-582.6" font-family="Times,serif" font-size="8.00">0 of 2.14s(0.68%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N32->N52 --> | |
| <g id="edge50" class="edge"><title>N32->N52</title> | |
| <g id="a_edge50"><a xlink:title="bufio.(*Reader).Read -> os.(*File).Read (2.14s)"> | |
| <path fill="none" stroke="black" d="M1564.18,-700.788C1559.37,-685.585 1554.37,-663.353 1558,-644 1559.73,-634.762 1563,-625.074 1566.45,-616.495"/> | |
| <polygon fill="black" stroke="black" points="1569.78,-617.597 1570.5,-607.027 1563.35,-614.844 1569.78,-617.597"/> | |
| </a> | |
| </g> | |
| <g id="a_edge50-label"><a xlink:title="bufio.(*Reader).Read -> os.(*File).Read (2.14s)"> | |
| <text text-anchor="middle" x="1575" y="-647.8" font-family="Times,serif" font-size="14.00"> 2.14s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N33->N30 --> | |
| <g id="edge34" class="edge"><title>N33->N30</title> | |
| <g id="a_edge34"><a xlink:title="runtime.(*mcache).nextFree -> runtime.systemstack (3.23s)"> | |
| <path fill="none" stroke="black" d="M1722,-361.974C1722,-350.192 1722,-334.561 1722,-321.158"/> | |
| <polygon fill="black" stroke="black" points="1725.5,-321.003 1722,-311.003 1718.5,-321.003 1725.5,-321.003"/> | |
| </a> | |
| </g> | |
| <g id="a_edge34-label"><a xlink:title="runtime.(*mcache).nextFree -> runtime.systemstack (3.23s)"> | |
| <text text-anchor="middle" x="1739" y="-332.8" font-family="Times,serif" font-size="14.00"> 3.23s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N34 --> | |
| <g id="node35" class="node"><title>N34</title> | |
| <g id="a_node35"><a xlink:title="compress/flate.(*decompressor).nextBlock (177.78s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="683,-990.5 515,-990.5 515,-952.5 683,-952.5 683,-990.5"/> | |
| <text text-anchor="middle" x="599" y="-979.3" font-family="Times,serif" font-size="9.00">compress/flate.(*decompressor).nextBlock</text> | |
| <text text-anchor="middle" x="599" y="-969.3" font-family="Times,serif" font-size="9.00">0.05s(0.016%)</text> | |
| <text text-anchor="middle" x="599" y="-959.3" font-family="Times,serif" font-size="9.00">of 177.78s(56.40%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N34->N2 --> | |
| <g id="edge7" class="edge"><title>N34->N2</title> | |
| <g id="a_edge7"><a xlink:title="compress/flate.(*decompressor).nextBlock -> compress/flate.(*decompressor).huffmanBlock (169.26s)"> | |
| <path fill="none" stroke="black" stroke-width="3" d="M599,-952.425C599,-941.02 599,-925.65 599,-910.626"/> | |
| <polygon fill="black" stroke="black" stroke-width="3" points="602.5,-910.334 599,-900.334 595.5,-910.334 602.5,-910.334"/> | |
| </a> | |
| </g> | |
| <g id="a_edge7-label"><a xlink:title="compress/flate.(*decompressor).nextBlock -> compress/flate.(*decompressor).huffmanBlock (169.26s)"> | |
| <text text-anchor="middle" x="622.5" y="-921.8" font-family="Times,serif" font-size="14.00"> 169.26s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N34->N22 --> | |
| <g id="edge23" class="edge"><title>N34->N22</title> | |
| <g id="a_edge23"><a xlink:title="compress/flate.(*decompressor).nextBlock -> compress/flate.(*decompressor).readHuffman (8.42s)"> | |
| <path fill="none" stroke="black" d="M667.044,-952.434C716.032,-939.022 783.515,-919.712 842,-900 858.868,-894.315 876.983,-887.591 893.506,-881.209"/> | |
| <polygon fill="black" stroke="black" points="894.981,-884.39 903.03,-877.501 892.441,-877.867 894.981,-884.39"/> | |
| </a> | |
| </g> | |
| <g id="a_edge23-label"><a xlink:title="compress/flate.(*decompressor).nextBlock -> compress/flate.(*decompressor).readHuffman (8.42s)"> | |
| <text text-anchor="middle" x="800" y="-921.8" font-family="Times,serif" font-size="14.00"> 8.42s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N40 --> | |
| <g id="node41" class="node"><title>N40</title> | |
| <g id="a_node41"><a xlink:title="github.com/biogo/hts/bgzf.(*decompressor).nextBlockAt (3.58s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1523.5,-608 1304.5,-608 1304.5,-570 1523.5,-570 1523.5,-608"/> | |
| <text text-anchor="middle" x="1414" y="-596.8" font-family="Times,serif" font-size="9.00">github.com/biogo/hts/bgzf.(*decompressor).nextBlockAt</text> | |
| <text text-anchor="middle" x="1414" y="-586.8" font-family="Times,serif" font-size="9.00">0.03s(0.0095%)</text> | |
| <text text-anchor="middle" x="1414" y="-576.8" font-family="Times,serif" font-size="9.00">of 3.58s(1.14%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N35->N40 --> | |
| <g id="edge32" class="edge"><title>N35->N40</title> | |
| <g id="a_edge32"><a xlink:title="github.com/biogo/hts/bgzf.(*Reader).nextBlock -> github.com/biogo/hts/bgzf.(*decompressor).nextBlockAt (3.58s)"> | |
| <path fill="none" stroke="black" d="M1414,-700.791C1414,-679.279 1414,-643.246 1414,-618.135"/> | |
| <polygon fill="black" stroke="black" points="1417.5,-618.116 1414,-608.116 1410.5,-618.116 1417.5,-618.116"/> | |
| </a> | |
| </g> | |
| <g id="a_edge32-label"><a xlink:title="github.com/biogo/hts/bgzf.(*Reader).nextBlock -> github.com/biogo/hts/bgzf.(*decompressor).nextBlockAt (3.58s)"> | |
| <text text-anchor="middle" x="1431" y="-647.8" font-family="Times,serif" font-size="14.00"> 3.58s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N36 --> | |
| <g id="node37" class="node"><title>N36</title> | |
| <g id="a_node37"><a xlink:title="runtime.newstack (2.74s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1000.5,-1458 921.5,-1458 921.5,-1420 1000.5,-1420 1000.5,-1458"/> | |
| <text text-anchor="middle" x="961" y="-1446.8" font-family="Times,serif" font-size="9.00">runtime.newstack</text> | |
| <text text-anchor="middle" x="961" y="-1436.8" font-family="Times,serif" font-size="9.00">0.05s(0.016%)</text> | |
| <text text-anchor="middle" x="961" y="-1426.8" font-family="Times,serif" font-size="9.00">of 2.74s(0.87%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N44 --> | |
| <g id="node45" class="node"><title>N44</title> | |
| <g id="a_node45"><a xlink:title="runtime.copystack (2.77s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1001.5,-1366 920.5,-1366 920.5,-1328 1001.5,-1328 1001.5,-1366"/> | |
| <text text-anchor="middle" x="961" y="-1354.8" font-family="Times,serif" font-size="9.00">runtime.copystack</text> | |
| <text text-anchor="middle" x="961" y="-1344.8" font-family="Times,serif" font-size="9.00">0.02s(0.0063%)</text> | |
| <text text-anchor="middle" x="961" y="-1334.8" font-family="Times,serif" font-size="9.00">of 2.77s(0.88%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N36->N44 --> | |
| <g id="edge39" class="edge"><title>N36->N44</title> | |
| <g id="a_edge39"><a xlink:title="runtime.newstack -> runtime.copystack (2.67s)"> | |
| <path fill="none" stroke="black" d="M961,-1419.79C961,-1407.34 961,-1390.61 961,-1376.42"/> | |
| <polygon fill="black" stroke="black" points="964.5,-1376.19 961,-1366.19 957.5,-1376.19 964.5,-1376.19"/> | |
| </a> | |
| </g> | |
| <g id="a_edge39-label"><a xlink:title="runtime.newstack -> runtime.copystack (2.67s)"> | |
| <text text-anchor="middle" x="978" y="-1390.8" font-family="Times,serif" font-size="14.00"> 2.67s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N37 --> | |
| <g id="node38" class="node"><title>N37</title> | |
| <g id="a_node38"><a xlink:title="compress/flate.(*decompressor).Read (258.42s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="674,-1082.5 524,-1082.5 524,-1044.5 674,-1044.5 674,-1082.5"/> | |
| <text text-anchor="middle" x="599" y="-1071.3" font-family="Times,serif" font-size="9.00">compress/flate.(*decompressor).Read</text> | |
| <text text-anchor="middle" x="599" y="-1061.3" font-family="Times,serif" font-size="9.00">0.04s(0.013%)</text> | |
| <text text-anchor="middle" x="599" y="-1051.3" font-family="Times,serif" font-size="9.00">of 258.42s(81.99%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N37->N2 --> | |
| <g id="edge9" class="edge"><title>N37->N2</title> | |
| <g id="a_edge9"><a xlink:title="compress/flate.(*decompressor).Read -> compress/flate.(*decompressor).huffmanBlock (79.57s)"> | |
| <path fill="none" stroke="black" stroke-width="2" d="M534.421,-1044.48C508.434,-1033.71 481.091,-1017.08 466,-992 446.604,-959.766 471.333,-929.501 504.52,-905.918"/> | |
| <polygon fill="black" stroke="black" stroke-width="2" points="506.819,-908.588 513.118,-900.069 502.881,-902.8 506.819,-908.588"/> | |
| </a> | |
| </g> | |
| <g id="a_edge9-label"><a xlink:title="compress/flate.(*decompressor).Read -> compress/flate.(*decompressor).huffmanBlock (79.57s)"> | |
| <text text-anchor="middle" x="486" y="-967.8" font-family="Times,serif" font-size="14.00"> 79.57s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N37->N5 --> | |
| <g id="edge63" class="edge"><title>N37->N5</title> | |
| <g id="a_edge63"><a xlink:title="compress/flate.(*decompressor).Read -> runtime.memmove (1.03s)"> | |
| <path fill="none" stroke="black" d="M523.766,-1057.43C377.281,-1046.55 68,-1018.17 68,-972.5 68,-972.5 68,-972.5 68,-719 68,-683.58 83.5764,-645.7 96.6012,-620.218"/> | |
| <polygon fill="black" stroke="black" points="99.8478,-621.565 101.43,-611.089 93.6603,-618.292 99.8478,-621.565"/> | |
| </a> | |
| </g> | |
| <g id="a_edge63-label"><a xlink:title="compress/flate.(*decompressor).Read -> runtime.memmove (1.03s)"> | |
| <text text-anchor="middle" x="85" y="-853.3" font-family="Times,serif" font-size="14.00"> 1.03s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N37->N34 --> | |
| <g id="edge6" class="edge"><title>N37->N34</title> | |
| <g id="a_edge6"><a xlink:title="compress/flate.(*decompressor).Read -> compress/flate.(*decompressor).nextBlock (177.78s)"> | |
| <path fill="none" stroke="black" stroke-width="3" d="M599,-1044.29C599,-1031.84 599,-1015.11 599,-1000.92"/> | |
| <polygon fill="black" stroke="black" stroke-width="3" points="602.5,-1000.69 599,-990.686 595.5,-1000.69 602.5,-1000.69"/> | |
| </a> | |
| </g> | |
| <g id="a_edge6-label"><a xlink:title="compress/flate.(*decompressor).Read -> compress/flate.(*decompressor).nextBlock (177.78s)"> | |
| <text text-anchor="middle" x="622.5" y="-1013.8" font-family="Times,serif" font-size="14.00"> 177.78s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N38 --> | |
| <g id="node39" class="node"><title>N38</title> | |
| <g id="a_node39"><a xlink:title="compress/gzip.(*Reader).Read (269.81s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="661.5,-1176 536.5,-1176 536.5,-1138 661.5,-1138 661.5,-1176"/> | |
| <text text-anchor="middle" x="599" y="-1164.8" font-family="Times,serif" font-size="9.00">compress/gzip.(*Reader).Read</text> | |
| <text text-anchor="middle" x="599" y="-1154.8" font-family="Times,serif" font-size="9.00">0.04s(0.013%)</text> | |
| <text text-anchor="middle" x="599" y="-1144.8" font-family="Times,serif" font-size="9.00">of 269.81s(85.60%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N38->N37 --> | |
| <g id="edge5" class="edge"><title>N38->N37</title> | |
| <g id="a_edge5"><a xlink:title="compress/gzip.(*Reader).Read -> compress/flate.(*decompressor).Read (258.42s)"> | |
| <path fill="none" stroke="black" stroke-width="5" d="M599,-1137.92C599,-1125.01 599,-1107.4 599,-1092.66"/> | |
| <polygon fill="black" stroke="black" stroke-width="5" points="603.375,-1092.54 599,-1082.54 594.625,-1092.54 603.375,-1092.54"/> | |
| </a> | |
| </g> | |
| <g id="a_edge5-label"><a xlink:title="compress/gzip.(*Reader).Read -> compress/flate.(*decompressor).Read (258.42s)"> | |
| <text text-anchor="middle" x="622.5" y="-1105.8" font-family="Times,serif" font-size="14.00"> 258.42s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N39 --> | |
| <g id="node40" class="node"><title>N39</title> | |
| <g id="a_node40"><a xlink:title="hash/crc32.Update (11.28s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="775.5,-1082.5 692.5,-1082.5 692.5,-1044.5 775.5,-1044.5 775.5,-1082.5"/> | |
| <text text-anchor="middle" x="734" y="-1071.3" font-family="Times,serif" font-size="9.00">hash/crc32.Update</text> | |
| <text text-anchor="middle" x="734" y="-1061.3" font-family="Times,serif" font-size="9.00">0.04s(0.013%)</text> | |
| <text text-anchor="middle" x="734" y="-1051.3" font-family="Times,serif" font-size="9.00">of 11.28s(3.58%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N38->N39 --> | |
| <g id="edge18" class="edge"><title>N38->N39</title> | |
| <g id="a_edge18"><a xlink:title="compress/gzip.(*Reader).Read -> hash/crc32.Update (11.24s)"> | |
| <path fill="none" stroke="black" d="M625.672,-1137.92C646.658,-1123.7 676.078,-1103.76 698.964,-1088.25"/> | |
| <polygon fill="black" stroke="black" points="701.07,-1091.05 707.384,-1082.54 697.142,-1085.25 701.07,-1091.05"/> | |
| </a> | |
| </g> | |
| <g id="a_edge18-label"><a xlink:title="compress/gzip.(*Reader).Read -> hash/crc32.Update (11.24s)"> | |
| <text text-anchor="middle" x="699" y="-1105.8" font-family="Times,serif" font-size="14.00"> 11.24s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N51 --> | |
| <g id="node52" class="node"><title>N51</title> | |
| <g id="a_node52"><a xlink:title="hash/crc32.ieeeInit.func1 (11.33s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="997,-989.5 899,-989.5 899,-953.5 997,-953.5 997,-989.5"/> | |
| <text text-anchor="middle" x="948" y="-974.1" font-family="Times,serif" font-size="8.00">hash/crc32.ieeeInit.func1</text> | |
| <text text-anchor="middle" x="948" y="-965.1" font-family="Times,serif" font-size="8.00">0 of 11.33s(3.59%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N39->N51 --> | |
| <g id="edge19" class="edge"><title>N39->N51</title> | |
| <g id="a_edge19"><a xlink:title="hash/crc32.Update -> hash/crc32.ieeeInit.func1 (11.21s)"> | |
| <path fill="none" stroke="black" d="M775.515,-1045.04C810.439,-1030.35 860.485,-1009.31 897.682,-993.662"/> | |
| <polygon fill="black" stroke="black" points="899.466,-996.709 907.327,-989.606 896.752,-990.256 899.466,-996.709"/> | |
| </a> | |
| </g> | |
| <g id="a_edge19-label"><a xlink:title="hash/crc32.Update -> hash/crc32.ieeeInit.func1 (11.21s)"> | |
| <text text-anchor="middle" x="874" y="-1013.8" font-family="Times,serif" font-size="14.00"> 11.21s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N42 --> | |
| <g id="node43" class="node"><title>N42</title> | |
| <g id="a_node43"><a xlink:title="github.com/biogo/hts/bgzf.(*decompressor).readMember (3.05s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1523.5,-495 1304.5,-495 1304.5,-457 1523.5,-457 1523.5,-495"/> | |
| <text text-anchor="middle" x="1414" y="-483.8" font-family="Times,serif" font-size="9.00">github.com/biogo/hts/bgzf.(*decompressor).readMember</text> | |
| <text text-anchor="middle" x="1414" y="-473.8" font-family="Times,serif" font-size="9.00">0.02s(0.0063%)</text> | |
| <text text-anchor="middle" x="1414" y="-463.8" font-family="Times,serif" font-size="9.00">of 3.05s(0.97%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N40->N42 --> | |
| <g id="edge36" class="edge"><title>N40->N42</title> | |
| <g id="a_edge36"><a xlink:title="github.com/biogo/hts/bgzf.(*decompressor).nextBlockAt -> github.com/biogo/hts/bgzf.(*decompressor).readMember (3.05s)"> | |
| <path fill="none" stroke="black" d="M1414,-569.671C1414,-552.237 1414,-525.748 1414,-505.549"/> | |
| <polygon fill="black" stroke="black" points="1417.5,-505.357 1414,-495.357 1410.5,-505.357 1417.5,-505.357"/> | |
| </a> | |
| </g> | |
| <g id="a_edge36-label"><a xlink:title="github.com/biogo/hts/bgzf.(*decompressor).nextBlockAt -> github.com/biogo/hts/bgzf.(*decompressor).readMember (3.05s)"> | |
| <text text-anchor="middle" x="1431" y="-522.8" font-family="Times,serif" font-size="14.00"> 3.05s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N41 --> | |
| <g id="node42" class="node"><title>N41</title> | |
| <g id="a_node42"><a xlink:title="github.com/biogo/hts/bgzf.(*block).readFrom (269.96s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="688.5,-1366 509.5,-1366 509.5,-1328 688.5,-1328 688.5,-1366"/> | |
| <text text-anchor="middle" x="599" y="-1354.8" font-family="Times,serif" font-size="9.00">github.com/biogo/hts/bgzf.(*block).readFrom</text> | |
| <text text-anchor="middle" x="599" y="-1344.8" font-family="Times,serif" font-size="9.00">0.02s(0.0063%)</text> | |
| <text text-anchor="middle" x="599" y="-1334.8" font-family="Times,serif" font-size="9.00">of 269.96s(85.65%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N50 --> | |
| <g id="node51" class="node"><title>N50</title> | |
| <g id="a_node51"><a xlink:title="github.com/biogo/hts/bgzf.readToEOF (269.81s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="669,-1270 529,-1270 529,-1234 669,-1234 669,-1270"/> | |
| <text text-anchor="middle" x="599" y="-1254.6" font-family="Times,serif" font-size="8.00">github.com/biogo/hts/bgzf.readToEOF</text> | |
| <text text-anchor="middle" x="599" y="-1245.6" font-family="Times,serif" font-size="8.00">0 of 269.81s(85.60%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N41->N50 --> | |
| <g id="edge3" class="edge"><title>N41->N50</title> | |
| <g id="a_edge3"><a xlink:title="github.com/biogo/hts/bgzf.(*block).readFrom -> github.com/biogo/hts/bgzf.readToEOF (269.81s)"> | |
| <path fill="none" stroke="black" stroke-width="5" d="M599,-1327.63C599,-1314.17 599,-1295.67 599,-1280.46"/> | |
| <polygon fill="black" stroke="black" stroke-width="5" points="603.375,-1280.08 599,-1270.08 594.625,-1280.08 603.375,-1280.08"/> | |
| </a> | |
| </g> | |
| <g id="a_edge3-label"><a xlink:title="github.com/biogo/hts/bgzf.(*block).readFrom -> github.com/biogo/hts/bgzf.readToEOF (269.81s)"> | |
| <text text-anchor="middle" x="622.5" y="-1295.8" font-family="Times,serif" font-size="14.00"> 269.81s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N43 --> | |
| <g id="node44" class="node"><title>N43</title> | |
| <g id="a_node44"><a xlink:title="runtime.(*mcache).refill (2.23s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1772.5,-127 1671.5,-127 1671.5,-89 1772.5,-89 1772.5,-127"/> | |
| <text text-anchor="middle" x="1722" y="-115.8" font-family="Times,serif" font-size="9.00">runtime.(*mcache).refill</text> | |
| <text text-anchor="middle" x="1722" y="-105.8" font-family="Times,serif" font-size="9.00">0.02s(0.0063%)</text> | |
| <text text-anchor="middle" x="1722" y="-95.8" font-family="Times,serif" font-size="9.00">of 2.23s(0.71%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N43->N29 --> | |
| <g id="edge48" class="edge"><title>N43->N29</title> | |
| <g id="a_edge48"><a xlink:title="runtime.(*mcache).refill -> runtime.(*mcentral).cacheSpan (2.21s)"> | |
| <path fill="none" stroke="black" d="M1722,-88.9735C1722,-77.1918 1722,-61.5607 1722,-48.1581"/> | |
| <polygon fill="black" stroke="black" points="1725.5,-48.0033 1722,-38.0034 1718.5,-48.0034 1725.5,-48.0033"/> | |
| </a> | |
| </g> | |
| <g id="a_edge48-label"><a xlink:title="runtime.(*mcache).refill -> runtime.(*mcentral).cacheSpan (2.21s)"> | |
| <text text-anchor="middle" x="1739" y="-59.8" font-family="Times,serif" font-size="14.00"> 2.21s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N44->N25 --> | |
| <g id="edge42" class="edge"><title>N44->N25</title> | |
| <g id="a_edge42"><a xlink:title="runtime.copystack -> runtime.gentraceback (2.48s)"> | |
| <path fill="none" stroke="black" d="M961,-1327.63C961,-1314.85 961,-1297.53 961,-1282.79"/> | |
| <polygon fill="black" stroke="black" points="964.5,-1282.62 961,-1272.62 957.5,-1282.62 964.5,-1282.62"/> | |
| </a> | |
| </g> | |
| <g id="a_edge42-label"><a xlink:title="runtime.copystack -> runtime.gentraceback (2.48s)"> | |
| <text text-anchor="middle" x="978" y="-1295.8" font-family="Times,serif" font-size="14.00"> 2.48s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N45 --> | |
| <g id="node46" class="node"><title>N45</title> | |
| <g id="a_node46"><a xlink:title="runtime.morestack (2.76s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1002,-1654.5 920,-1654.5 920,-1616.5 1002,-1616.5 1002,-1654.5"/> | |
| <text text-anchor="middle" x="961" y="-1643.3" font-family="Times,serif" font-size="9.00">runtime.morestack</text> | |
| <text text-anchor="middle" x="961" y="-1633.3" font-family="Times,serif" font-size="9.00">0.02s(0.0063%)</text> | |
| <text text-anchor="middle" x="961" y="-1623.3" font-family="Times,serif" font-size="9.00">of 2.76s(0.88%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N45->N36 --> | |
| <g id="edge38" class="edge"><title>N45->N36</title> | |
| <g id="a_edge38"><a xlink:title="runtime.morestack -> runtime.newstack (2.74s)"> | |
| <path fill="none" stroke="black" d="M961,-1616.2C961,-1582.09 961,-1508.57 961,-1468.11"/> | |
| <polygon fill="black" stroke="black" points="964.5,-1468.11 961,-1458.11 957.5,-1468.11 964.5,-1468.11"/> | |
| </a> | |
| </g> | |
| <g id="a_edge38-label"><a xlink:title="runtime.morestack -> runtime.newstack (2.74s)"> | |
| <text text-anchor="middle" x="978" y="-1479.8" font-family="Times,serif" font-size="14.00"> 2.74s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N46 --> | |
| <g id="node47" class="node"><title>N46</title> | |
| <g id="a_node47"><a xlink:title="syscall.read (2.14s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1616.5,-311 1541.5,-311 1541.5,-273 1616.5,-273 1616.5,-311"/> | |
| <text text-anchor="middle" x="1579" y="-299.8" font-family="Times,serif" font-size="9.00">syscall.read</text> | |
| <text text-anchor="middle" x="1579" y="-289.8" font-family="Times,serif" font-size="9.00">0.02s(0.0063%)</text> | |
| <text text-anchor="middle" x="1579" y="-279.8" font-family="Times,serif" font-size="9.00">of 2.14s(0.68%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N46->N14 --> | |
| <g id="edge54" class="edge"><title>N46->N14</title> | |
| <g id="a_edge54"><a xlink:title="syscall.read -> syscall.Syscall (2.12s)"> | |
| <path fill="none" stroke="black" d="M1579,-272.787C1579,-261.196 1579,-245.876 1579,-232.367"/> | |
| <polygon fill="black" stroke="black" points="1582.5,-232.026 1579,-222.026 1575.5,-232.026 1582.5,-232.026"/> | |
| </a> | |
| </g> | |
| <g id="a_edge54-label"><a xlink:title="syscall.read -> syscall.Syscall (2.12s)"> | |
| <text text-anchor="middle" x="1596" y="-243.8" font-family="Times,serif" font-size="14.00"> 2.12s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N47->N43 --> | |
| <g id="edge47" class="edge"><title>N47->N43</title> | |
| <g id="a_edge47"><a xlink:title="runtime.(*mcache).nextFree.func1 -> runtime.(*mcache).refill (2.23s)"> | |
| <path fill="none" stroke="black" d="M1722,-180.787C1722,-168.344 1722,-151.605 1722,-137.421"/> | |
| <polygon fill="black" stroke="black" points="1725.5,-137.186 1722,-127.186 1718.5,-137.186 1725.5,-137.186"/> | |
| </a> | |
| </g> | |
| <g id="a_edge47-label"><a xlink:title="runtime.(*mcache).nextFree.func1 -> runtime.(*mcache).refill (2.23s)"> | |
| <text text-anchor="middle" x="1739" y="-148.8" font-family="Times,serif" font-size="14.00"> 2.23s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N48->N32 --> | |
| <g id="edge44" class="edge"><title>N48->N32</title> | |
| <g id="a_edge44"><a xlink:title="github.com/biogo/hts/bgzf.(*countReader).Read -> bufio.(*Reader).Read (2.31s)"> | |
| <path fill="none" stroke="black" d="M1552.66,-838.902C1556.17,-816.353 1562.39,-776.37 1566.6,-749.284"/> | |
| <polygon fill="black" stroke="black" points="1570.08,-749.67 1568.16,-739.251 1563.17,-748.594 1570.08,-749.67"/> | |
| </a> | |
| </g> | |
| <g id="a_edge44-label"><a xlink:title="github.com/biogo/hts/bgzf.(*countReader).Read -> bufio.(*Reader).Read (2.31s)"> | |
| <text text-anchor="middle" x="1578" y="-784.8" font-family="Times,serif" font-size="14.00"> 2.31s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N49 --> | |
| <g id="node50" class="node"><title>N49</title> | |
| <g id="a_node50"><a xlink:title="github.com/biogo/hts/bgzf.(*decompressor).nextBlockAt.func1 (270.07s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="708,-1457 490,-1457 490,-1421 708,-1421 708,-1457"/> | |
| <text text-anchor="middle" x="599" y="-1441.6" font-family="Times,serif" font-size="8.00">github.com/biogo/hts/bgzf.(*decompressor).nextBlockAt.func1</text> | |
| <text text-anchor="middle" x="599" y="-1432.6" font-family="Times,serif" font-size="8.00">0 of 270.07s(85.68%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N49->N41 --> | |
| <g id="edge2" class="edge"><title>N49->N41</title> | |
| <g id="a_edge2"><a xlink:title="github.com/biogo/hts/bgzf.(*decompressor).nextBlockAt.func1 -> github.com/biogo/hts/bgzf.(*block).readFrom (269.96s)"> | |
| <path fill="none" stroke="black" stroke-width="5" d="M599,-1420.65C599,-1408.07 599,-1390.79 599,-1376.23"/> | |
| <polygon fill="black" stroke="black" stroke-width="5" points="603.375,-1376.23 599,-1366.23 594.625,-1376.23 603.375,-1376.23"/> | |
| </a> | |
| </g> | |
| <g id="a_edge2-label"><a xlink:title="github.com/biogo/hts/bgzf.(*decompressor).nextBlockAt.func1 -> github.com/biogo/hts/bgzf.(*block).readFrom (269.96s)"> | |
| <text text-anchor="middle" x="622.5" y="-1390.8" font-family="Times,serif" font-size="14.00"> 269.96s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N50->N38 --> | |
| <g id="edge4" class="edge"><title>N50->N38</title> | |
| <g id="a_edge4"><a xlink:title="github.com/biogo/hts/bgzf.readToEOF -> compress/gzip.(*Reader).Read (269.81s)"> | |
| <path fill="none" stroke="black" stroke-width="5" d="M599,-1233.94C599,-1220.65 599,-1201.9 599,-1186.36"/> | |
| <polygon fill="black" stroke="black" stroke-width="5" points="603.375,-1186.22 599,-1176.22 594.625,-1186.22 603.375,-1186.22"/> | |
| </a> | |
| </g> | |
| <g id="a_edge4-label"><a xlink:title="github.com/biogo/hts/bgzf.readToEOF -> compress/gzip.(*Reader).Read (269.81s)"> | |
| <text text-anchor="middle" x="622.5" y="-1200.8" font-family="Times,serif" font-size="14.00"> 269.81s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N51->N6 --> | |
| <g id="edge17" class="edge"><title>N51->N6</title> | |
| <g id="a_edge17"><a xlink:title="hash/crc32.ieeeInit.func1 -> hash/crc32.slicingUpdate (11.33s)"> | |
| <path fill="none" stroke="black" d="M978.072,-953.414C1008.19,-936.301 1055.21,-909.587 1091.84,-888.773"/> | |
| <polygon fill="black" stroke="black" points="1093.95,-891.601 1100.91,-883.618 1090.49,-885.515 1093.95,-891.601"/> | |
| </a> | |
| </g> | |
| <g id="a_edge17-label"><a xlink:title="hash/crc32.ieeeInit.func1 -> hash/crc32.slicingUpdate (11.33s)"> | |
| <text text-anchor="middle" x="1056" y="-921.8" font-family="Times,serif" font-size="14.00"> 11.33s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N53 --> | |
| <g id="node54" class="node"><title>N53</title> | |
| <g id="a_node54"><a xlink:title="os.(*File).read (2.14s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1616,-494 1542,-494 1542,-458 1616,-458 1616,-494"/> | |
| <text text-anchor="middle" x="1579" y="-478.6" font-family="Times,serif" font-size="8.00">os.(*File).read</text> | |
| <text text-anchor="middle" x="1579" y="-469.6" font-family="Times,serif" font-size="8.00">0 of 2.14s(0.68%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N52->N53 --> | |
| <g id="edge51" class="edge"><title>N52->N53</title> | |
| <g id="a_edge51"><a xlink:title="os.(*File).Read -> os.(*File).read (2.14s)"> | |
| <path fill="none" stroke="black" d="M1579,-570.656C1579,-552.898 1579,-525.04 1579,-504.317"/> | |
| <polygon fill="black" stroke="black" points="1582.5,-504.222 1579,-494.222 1575.5,-504.222 1582.5,-504.222"/> | |
| </a> | |
| </g> | |
| <g id="a_edge51-label"><a xlink:title="os.(*File).Read -> os.(*File).read (2.14s)"> | |
| <text text-anchor="middle" x="1596" y="-522.8" font-family="Times,serif" font-size="14.00"> 2.14s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N56 --> | |
| <g id="node57" class="node"><title>N56</title> | |
| <g id="a_node57"><a xlink:title="syscall.Read (2.14s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="1616,-399 1542,-399 1542,-363 1616,-363 1616,-399"/> | |
| <text text-anchor="middle" x="1579" y="-383.6" font-family="Times,serif" font-size="8.00">syscall.Read</text> | |
| <text text-anchor="middle" x="1579" y="-374.6" font-family="Times,serif" font-size="8.00">0 of 2.14s(0.68%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N53->N56 --> | |
| <g id="edge52" class="edge"><title>N53->N56</title> | |
| <g id="a_edge52"><a xlink:title="os.(*File).read -> syscall.Read (2.14s)"> | |
| <path fill="none" stroke="black" d="M1579,-457.942C1579,-444.394 1579,-425.18 1579,-409.469"/> | |
| <polygon fill="black" stroke="black" points="1582.5,-409.264 1579,-399.264 1575.5,-409.264 1582.5,-409.264"/> | |
| </a> | |
| </g> | |
| <g id="a_edge52-label"><a xlink:title="os.(*File).read -> syscall.Read (2.14s)"> | |
| <text text-anchor="middle" x="1596" y="-421.8" font-family="Times,serif" font-size="14.00"> 2.14s</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N54 --> | |
| <g id="node55" class="node"><title>N54</title> | |
| <g id="a_node55"><a xlink:title="runtime.goexit (311.67s)"> | |
| <polygon fill="#f8f8f8" stroke="black" points="642,-1653.5 556,-1653.5 556,-1617.5 642,-1617.5 642,-1653.5"/> | |
| <text text-anchor="middle" x="599" y="-1638.1" font-family="Times,serif" font-size="8.00">runtime.goexit</text> | |
| <text text-anchor="middle" x="599" y="-1629.1" font-family="Times,serif" font-size="8.00">0 of 311.67s(98.88%)</text> | |
| </a> | |
| </g> | |
| </g> | |
| <!-- N54->N49 --> | |
| <g id="edge1" class="edge"><title>N54->N49</title> | |
| <g id="a_edge1"><a xlink:title="runtime.goexit -> github.com/biogo/hts/bgzf.(*decompressor).nextBlockAt.func1 (270.07s)"> | |
| <path fill="none" stroke="black" stroke-width="5" d="M599,-1617.24C599,-1583.36 599,-1507.91 599,-1467.24"/> | |
| <polygon fill="black" stroke="black" stroke-width="5" points="603.375,-1467.22 599,-1457.22 594.625,-1467.22 603.375,-1467.22"/> | |
| </a> | |
| </g> | |
| <g id="a_edge1-label"><a xlink:title="runtime.goexit -> github.com/biogo/hts/bgzf.(*decompressor).nextBlockAt.func1 (270.07s)"> | |
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| // Copyright ©2017 The bíogo Authors. All rights reserved. | |
| // Use of this source code is governed by a BSD-style | |
| // license that can be found in the LICENSE file. | |
| // This program tabulates statistics on a bam file from the sam flag. | |
| // It replicates functionality in samtools flagstat. | |
| package main | |
| import ( | |
| "flag" | |
| "fmt" | |
| "io" | |
| "log" | |
| "os" | |
| "runtime/pprof" | |
| "github.com/biogo/hts/bam" | |
| "github.com/biogo/hts/bgzf" | |
| "github.com/biogo/hts/sam" | |
| ) | |
| const ( | |
| pass = iota | |
| fail | |
| ) | |
| var cpuprofile = flag.String("cpuprofile", "", "write cpu profile to file") | |
| func main() { | |
| flag.Parse() | |
| if len(flag.Args()) != 1 { | |
| log.Fatal("Expecting a single bam argument") | |
| } | |
| if *cpuprofile != "" { | |
| f, err := os.Create(*cpuprofile) | |
| if err != nil { | |
| log.Fatal(err) | |
| } | |
| defer f.Close() | |
| pprof.StartCPUProfile(f) | |
| defer pprof.StopCPUProfile() | |
| } | |
| f, err := os.Open(flag.Args()[0]) | |
| if err != nil { | |
| log.Fatal(err) | |
| } | |
| defer f.Close() | |
| ok, err := bgzf.HasEOF(f) | |
| if err != nil { | |
| log.Fatal(err) | |
| } | |
| if !ok { | |
| log.Println("EOF block missing") | |
| } | |
| b, err := bam.NewReader(f, 0) | |
| if err != nil { | |
| log.Fatal(err) | |
| } | |
| defer b.Close() | |
| b.Omit(bam.AllVariableLengthData) | |
| // counts is indexed by [pass/fail][sam.Flag] where we have 12 possible sam Flags. | |
| var counts [2][12]uint64 | |
| // track mates on different chromosomes. | |
| var mates [2]struct{ allMapQ, highMapQ uint64 } | |
| var good, singletons, paired [2]uint64 | |
| var qc int | |
| for { | |
| read, err := b.Read() | |
| if err == io.EOF { | |
| break | |
| } | |
| if err != nil { | |
| log.Fatal(err) | |
| } | |
| if read.Flags&sam.QCFail == 0 { | |
| qc = pass | |
| } else { | |
| qc = fail | |
| } | |
| for i := Paired; i <= Supplementary; i++ { | |
| if read.Flags&(1<<i) != 0 { | |
| counts[qc][i]++ | |
| } | |
| } | |
| const goodMask = sam.ProperPair | sam.Unmapped | |
| if read.Flags&goodMask == sam.ProperPair { | |
| good[qc]++ | |
| } | |
| const mapMask = sam.MateUnmapped | sam.Unmapped | |
| switch read.Flags & mapMask { | |
| case sam.MateUnmapped: | |
| singletons[qc]++ | |
| case 0: | |
| paired[qc]++ | |
| if read.MateRef != read.Ref && read.MateRef != nil && read.Ref != nil { | |
| if read.MapQ > 4 { | |
| mates[qc].highMapQ++ | |
| } | |
| mates[qc].allMapQ++ | |
| } | |
| } | |
| } | |
| // extract counts to match output from samtools flagstat. | |
| fmt.Printf("%d + %d in total (QC-passed reads + QC-failed reads)\n", counts[pass][Paired], counts[fail][Paired]) | |
| fmt.Printf("%d + %d in total secondary\n", counts[pass][Secondary], counts[fail][Secondary]) | |
| fmt.Printf("%d + %d in total supplementary\n", counts[pass][Supplementary], counts[fail][Supplementary]) | |
| fmt.Printf("%d + %d duplicates\n", counts[pass][Duplicate], counts[fail][Duplicate]) | |
| mappedPass := counts[pass][Paired] - counts[pass][Unmapped] | |
| mappedFail := counts[fail][Paired] - counts[fail][Unmapped] | |
| fmt.Printf("%d + %d mapped (%s : %s)\n", mappedPass, mappedFail, percent(mappedPass, counts[pass][Paired]), percent(mappedFail, counts[fail][Paired])) | |
| fmt.Printf("%d + %d paired in sequencing\n", counts[pass][Paired], counts[fail][Paired]) | |
| fmt.Printf("%d + %d read1\n", counts[pass][Read1], counts[fail][Read1]) | |
| fmt.Printf("%d + %d read2\n", counts[pass][Read2], counts[fail][Read2]) | |
| fmt.Printf("%d + %d properly paired (%s : %s)\n", good[pass], good[fail], percent(good[pass], counts[pass][Paired]), percent(good[fail], counts[fail][Paired])) | |
| fmt.Printf("%d + %d with itself and mate mapped\n", paired[pass], paired[fail]) | |
| fmt.Printf("%d + %d singletons (%s : %s)\n", singletons[pass], singletons[fail], percent(singletons[pass], counts[pass][Paired]), percent(singletons[fail], counts[fail][Paired])) | |
| fmt.Printf("%d + %d with mate mapped to a different chr\n", mates[pass].allMapQ, mates[fail].allMapQ) | |
| fmt.Printf("%d + %d with mate mapped to a different chr (mapQ>=5)\n", mates[pass].highMapQ, mates[fail].highMapQ) | |
| } | |
| func percent(n, total uint64) string { | |
| if total == 0 { | |
| return "N/A" | |
| } | |
| return fmt.Sprintf("%.2f%%", 100*float64(n)/float64(total)) | |
| } | |
| // The flag indexes for SAM flags. Reflects sam.Flag order. | |
| const ( | |
| Paired uint = iota // The read is paired in sequencing, no matter whether it is mapped in a pair. | |
| ProperPair // The read is mapped in a proper pair. | |
| Unmapped // The read itself is unmapped; conflictive with ProperPair. | |
| MateUnmapped // The mate is unmapped. | |
| Reverse // The read is mapped to the reverse strand. | |
| MateReverse // The mate is mapped to the reverse strand. | |
| Read1 // This is read1. | |
| Read2 // This is read2. | |
| Secondary // Not primary alignment. | |
| QCFail // QC failure. | |
| Duplicate // Optical or PCR duplicate. | |
| Supplementary // Supplementary alignment, indicates alignment is part of a chimeric alignment. | |
| ) |
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