kouichi-c-nakamura

Sub activateHyperlinks()
'Updateby Extendoffice
Dim Rng As Range
Dim WorkRng As Range
On Error Resume Next
Dim xTitleId As String
xTitleId = "Website" '<-----change this as needed
Set WorkRng = Application.Selection
Set WorkRng = Application.InputBox("Range", xTitleId, WorkRng.Address, Type:=8)
For Each Rng In WorkRng

kouichi-c-nakamura

function T = CEDS64ChanList(fhand)
% CEDS64ChanList returns a table of channels in the Spike2 data file
% specified by a handle fhand.
%
% SYNTAX
% T = CEDS64ChanList(fhand)
%
%
% INPUT ARGUMENTS
% fhand       integer

kouichi-c-nakamura

'removeFCVartifactForFreya.s2s
' See onskel.zip at http://ced.co.uk/downloads/scriptspkmeth
''
'it contains toolbar to enable the user to open
' a new data file for sampling and start and stop sampling.
'It displays the log view at the botton of the screen to place
' values in that the user may wish to extract
'All on-line analysis should be placed in the idle routine
'
'Note this script is UNDER DEVELOPMENT BY CED and is included for

kouichi-c-nakamura

function ma = writeMapAnnotation(session, keys, values, varargin)
% WRITEMAPANNOTATION Create and upload a map annotation onto OMERO
%
%    ma = writeMapAnnotation(session, keys, values) creates and uploads a
%    map annotation owned by the session user containing one or multiple
%    key/value pair(s). The keys and values input must be either strings or
%    cell arrays of strings with the same number of elements.
%
%    ma = writeMapAnnotation(session, keys, values, 'description',
%    description) also specifies the description of the map annotation.

kouichi-c-nakamura

%% use Java Gateway from MATLAB

host = 'xxxxxxx.xxxx.xxxxx';
userName = 'XXXXXXXX';
password = inputdlg('password:');
password = password{1};
[gateway,user,cred] = loadOmeroGateway(userName, password, host) % https://gist.github.com/kouichi-c-nakamura/c8d335bfe45ee15e3bd86771a8578596

%% Retrieve the list of ROIs attached to an image in a dataset

kouichi-c-nakamura

function fac = getGatewayFacility(gateway,classname)
% getGatewayFacility is a MATLAB function to be used with OMERO Java
% Gateway.
%
% in Java, the following code returns the XxxxxFacility object fac.
%   XxxxxFacility fac = gateway.getFacility(XxxxxFacility.class)
%
% However, running the same code in MATLAB requires special handling and
% this functions does that for you. For more details, see
% https://docs.openmicroscopy.org/latest/omero/developers/Java.html

kouichi-c-nakamura

function [xml, res] = bfTiffComment(imgfile, varargin)
% bfTiffComment allows you to extract, inject, indent or validate OME-XML
% embeeded in an OME-TIFF file or an XML file.
%
% SYNTAX
% xml = bfTiffComment(imgfile)
% xml = bfTiffComment(xmlfile)
% xml = bfTiffComment(xmlstr)
% [xml,res] = bfTiffComment(____,'Param',value)
%

kouichi-c-nakamura

function [gateway,user,cred] = loadOmeroGateway(userName, password, host, varargin)
% loadOmeroGateway opens a connection to an OMERO server using Java gateway 
% (https://docs.openmicroscopy.org/latest/omero/developers/Java.html#gatewayconnect).
%
% SYNTAX
% [gateway,user,cred] = loadOmeroGateway(userName, password, host)
% [gateway,user,cred] = loadOmeroGateway(userName, password, host, port)
%
%
% INPUT ARGUMENTS

kouichi-c-nakamura

{
    "translatorID": "1ed36c21-de68-4ba4-a27f-d724ce258db4",
    "label": "Society for Neuroscience Abstract 2016",
    "creator": "Kouchi C. Nakamura, PhD; kouichi.c.nakamura@gmail.com",
    "target": "^https?://www\\.abstractsonline\\.com/pp8/#!/\\d+/presentation/",
    "minVersion": "3.0",
    "maxVersion": "",
    "priority": 100,
    "inRepository": true,
    "translatorType": 4,

kouichi-c-nakamura

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    <title>The Journal of Neuroscience-DOI</title>
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