kozo2

# License:
#   I hereby state this snippet is below "threshold of originality" where applicable (public domain).
#
# Otherwise, since initially posted on Stackoverflow, use as:
#   CC-BY-SA 3.0 skyking, Glenn Maynard, Axel Huebl
#   http://stackoverflow.com/a/31047259/2719194
#   http://stackoverflow.com/a/4858123/2719194

import types

kozo2

kozo2

$ docker run -it ubuntu:xenial
Unable to find image 'ubuntu:xenial' locally
xenial: Pulling from library/ubuntu
...

Digest: sha256:a0ee7647e24c8494f1cf6b94f1a3cd127f423268293c25d924fbe18fd82db5a4
Status: Downloaded newer image for ubuntu:xenial

root@3479ac349e68:/# cd

kozo2

kozo2

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library(gtable)
d=data.frame(g=c(1,1,1,2,2,3),x=c(1,2,3,1,2,3),y=1:6);
p = ggplot(d,aes(x,y))+geom_bar(stat="identity")+facet_wrap(~g) 
gt= ggplot_gtable(ggplot_build(g))

graphics.off()

for (p in c(4, 7, 10)) {
  pdf(paste0("plot-", p, ".pdf"))
  grid.draw(gt[,c(1:3, p, 12)])

kozo2

Windows 7 (64bit)上でE-Cell4のPython拡張をビルドする

準備

E-Cell4はwin32ブランチをチェックアウトして用いる. 必要なら各自Gitをインストールして使う: https://github.com/ecell/ecell4

以下がビルドに利用したもの:

kozo2

import net.liftweb.json.Xml // converts XML to JSON
import com.mongodb.casbah.Imports._ // To put stuff in Mongo
import com.mongodb.casbah.MongoDB // To connect to Mongo
import com.mongodb.util.JSON // To parse JSON into a MongoDBObject
import net.liftweb.json._ // To output Lift JSON as actual JSON
import scala.xml.XML // To load XML

// load the XML
val xml = XML.load("http://www.w3schools.com/xml/note.xml")
// fire up mongo connection

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from java.io import File

KEGG_DIR = "/Users/kozo2/kegg/"

CARBOHYDRATE = "Carbohydrate"

pathwayids_for = { CARBOHYDRATE : ["00010", "00020", "00030", "00040", "00051", "00052", "00053", "00500", "00520", "00562", "00620", "00630", "00640", "00650", "00660"] }
ORGANISM = "eco"

loadNetworkTF = cyAppAdapter.get_LoadNetworkFileTaskFactory()

kozo2

--- Spawns cmd if no client can be found matching properties
-- If such a client can be found, pop to first tag where it is visible, and give it focus
-- @param cmd the command to execute
-- @param properties a table of properties to match against clients. Possible entries: any properties of the client object
function run_or_raise(cmd, properties)
   local clients = client.get()
   local focused = awful.client.next(0)
   local findex = 0
   local matched_clients = {}
   local n = 0