[MultiStackMonage in a script] This script will use MultiStackMontage to create a montage for all open images in Fiji #Fiji #groovy #biop

MultiStackMontage All images.groovy

// Makes a montage with the selected settings from all open images
// By Olivier Burri, EPFL - SV - BIOP
// For Matjaz Panjan, Jožef Stefan Institute
// This needs the StackMontage plugin, which is available from the PTBIOP update site

def nRows = 2
def nCols = 1

// SCRIPT START

// Pick up all the currently open image names
def imageIDs = WindowManager.getIDList() as List

// Get a list of the actual images
def allImages = imageIDs.collect{ 
	def image = WindowManager.getImage( it )
	if ( image.getType() == ImagePlus.COLOR_256 ) new ImageConverter(image).convertToRGB()
	return image
}

def montage = StackMontage.montageImages( allImages, nRows, nCols);
        
montage.show()

// Imports
import ch.epfl.biop.montage.StackMontage
import ij.WindowManager
import ij.process.ImageConverter
import ij.ImagePlus