script.sh

#!/bin/sh
# autopkgtest check: build and run pymol scripts from directory and subdirectories
# ignores errors appearing inside PYMOL command line, checks if message
# "PyMOL: normal program termination." present in pymol's output.
# Author: Tatiana Malygina <merlettaia@gmail.com>

set -e

testsdir="$(cd "$1" && pwd)"
echo "work with $testsdir"

pkg=pymol

if [ "$ADTTMP" = "" ] ; then
  ADTTMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM
fi

cd $ADTTMP

#cp -a /usr/share/doc/${pkg}/examples/* .
#find . -type f -name "*.gz" -exec gunzip \{\} \;
#for lnk in `find . -type l -name "*.gz"` ; do
#    ln -s `basename $(readlink $lnk) .gz` `echo $lnk | sed 's/\.gz$//'`
#    rm $lnk
#done

for dir in $(find $testsdir -type d); do
  echo "Processing new directory $dir"
  #1. symlink all files to current dir
  for file in $dir/*; do
    if [ -f "$file" ]; then
      ln -s $file
    fi
  done
  #echo $(find -L . -type f)
  # select .py and .pml and run
  for file in $(find -L . -name '*.py' -or -name '*.pml'); do
    command=$(pymol -c $file) # | grep 'PyMOL: normal program termination.')
    echo $(echo "$command" | grep "PyMOL: normal program termination.")
    if [ -z "$(echo "$command" | grep 'PyMOL: normal program termination.')" ]; then
      echo -e 'not ok - copy $dir contents and run \"pymol -c $file | grep 'PyMOL: normal program termination.'\"' 1>&2
      [ -z "$(echo "$command" | grep "PyMOL: normal program termination.")" ];
    else
      echo "ok - copy $dir contents and run \"pymol -c $file | grep 'PyMOL: normal program termination.'\""
    fi
  done
  #delete all files and symlinks after folder processing
  for file in $(find -P . -type f); do
    rm $file
  done
done