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package foo.common.algorithms.geometry

import foo.common.structures.geometry.{
  Simplex,
  GeometryVector,
  InfiniteVector, PointPosition
}

object ManifoldUtils {

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"""Alternative aminoacid to SMILES convertor

If you want to check how it works, simply run
```
python aa_convertor.py
```
When called this way, module expects that rdkit is installed, however simple 
module import and function call shouldn't fail when it is not.

This module should be compatible with python 2 & 3.

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from prody import *

pdb = parsePDB("1QS3")

def sliding_window(aminoacids, width=3):
    """
    iterates over residues in given chain, returns iterator 
    with arrays containing each width elements (as a sliding window)
    """
    index = 1 # prody starts iteration from 1, or at least it seems

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type C0{T}
    super :: T#base obj
    x :: Int#subtype fields
    function C0(x::Int, y::Int)
        new(T(x), y) # вызвали конструктор базового типа, если надо, ну и добавили сложную логику
    end
end
function convert{T}(::Type{C0{T}}, x::Int, y::Int)
    C0{T}(x, y)

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#!/bin/sh
# autopkgtest check: build and run pymol scripts from directory and subdirectories
# ignores errors appearing inside PYMOL command line, checks if message
# "PyMOL: normal program termination." present in pymol's output.
# Author: Tatiana Malygina <merlettaia@gmail.com>

set -e

testsdir="$(cd "$1" && pwd)"
echo "work with $testsdir"

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Following table contains packages I worked on by July, 16, 2015 (starting from June, 15):

Package	Notes
librostlab
librostlab-blast
libzerg
libzerg-perl
librg-blast-parser-perl
librg-utils-perl

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Following table contains packages I worked on by June, 15, 2015:

Package	What I did
Concavity	1 test + 1 serious bug fixed
Conservation-code	2 tests + 1 small patch
Dssp	1 test + example files
Profbval	1 test
Tm-align	1 test (for both TMalign and TMscore) + example files
Predictnls	1 test

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# -*- mode: ruby -*-
# vi: set ft=ruby :

# All Vagrant configuration is done below. The "2" in Vagrant.configure
# configures the configuration version (we support older styles for
# backwards compatibility). Please don't change it unless you know what
# you're doing.
Vagrant.configure(2) do |config|
  # The most common configuration options are documented and commented below.
  # For a complete reference, please see the online documentation at

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for i in Sequence([(1, 2, 3, 4, 5), (6, 5, 4, 3), (-3, -3, -3 )])
    println(i)
end