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lindenb/vcf-annotations.xml

Created May 19, 2010 15:20
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vcf-annotations.xml
<?xml version="1.0" encoding="UTF-8"?>
<vcf xmlns="http://www.umr915.univ-nantes.fr/vcf/" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/">
<header>
<!-- header omitted -->
</header>
<body>
<variant xmlns="http://www.umr915.univ-nantes.fr/vcf/">
<chromosome>chrN</chromosome>
<position>10109</position>
<ref>A</ref>
<alt>T</alt>
<quality>94.5</quality>
<info>
<AC>2</AC>
<HRun>0</HRun>
<AB>0.67</AB>
<Dels>0.00</Dels>
<DP>14</DP>
<QD>6.75</QD>
<AF>0.50</AF>
<MQ0>4</MQ0>
<MQ>19.70</MQ>
<SB>-64.74</SB>
<AN>4</AN>
</info>
<call index="0">
<GT>1/1</GT>
<DP>4</DP>
<GL>-8.74,-2.21,-6.80</GL>
<GQ>45.90</GQ>
</call>
<call index="1">
<GT>0/1</GT>
<DP>4</DP>
<GL>-8.74,-2.21,-6.80</GL>
<GQ>45.90</GQ>
</call>
<knownGene>
<start>4268</start>
<name>gene1</name>
<type>5'UTR</type>
<chromosome>chrN</chromosome>
<end>14764</end>
</knownGene>
<segdups>
<start>8257</start>
<name>chrN2:11001</name>
<score>1148052</score>
<chromosome>chrN</chromosome>
<end>76976</end>
</segdups>
</variant>
<variant xmlns="http://www.umr915.univ-nantes.fr/vcf/">
<chromosome>chrN</chromosome>
<position>10578</position>
<ref>G</ref>
<alt>A</alt>
<quality>120.87</quality>
<info>
<AC>4</AC>
<HRun>0</HRun>
<Dels>0.00</Dels>
<DP>4</DP>
<QD>30.22</QD>
<AF>1.00</AF>
<MQ0>0</MQ0>
<MQ>50.00</MQ>
<SB>-87.10</SB>
<AN>4</AN>
</info>
<call index="0">
<GT>0/1</GT>
<DP>2</DP>
<GL>-8.92,-1.60,-1.00</GL>
<GQ>6.02</GQ>
</call>
<call index="1">
<GT>0/1</GT>
<DP>2</DP>
<GL>-8.92,-1.60,-1.00</GL>
<GQ>6.02</GQ>
</call>
<knownGene>
<start>4268</start>
<name>gene1</name>
<type>5'UTR</type>
<chromosome>chrN</chromosome>
<end>14764</end>
</knownGene>
<segdups>
<start>8257</start>
<name>chrN2:11001</name>
<score>1148052</score>
<chromosome>chrN</chromosome>
<end>76976</end>
</segdups>
</variant>
<!-- (...) -->
</body>
</vcf>
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