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content of https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE87112 " A Compendium of Chromatin Contact Maps Reveal Spatially Active Regions in the Human Genome" Hi-C HIC chromosome interaction
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README.md 
wget  -O GSE87112.tar.gz  "https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE87112&format=file&file=GSE87112%5Ffile%2Etar%2Egz"
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all_data_contact_maps.tgz

drwxr-xr-x anthony/renlab    0 2016-07-10 03:48 contact_maps/
drwxr-xr-x anthony/renlab    0 2016-07-10 04:55 contact_maps/HiCNorm/
drwxr-xr-x anthony/renlab    0 2016-07-10 22:01 contact_maps/HiCNorm/primary_cohort/
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all_data_FIRE_calls.tgz

drwxr-xr-x anthony/renlab    0 2016-07-11 22:23 all_data_FIRE_calls/
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-rw-r--r-- anthony/renlab   69062 2016-07-11 02:55 all_data_FIRE_calls/LV.FIRE.bed
-rw-r--r-- anthony/renlab   80400 2016-07-11 02:55 all_data_FIRE_calls/mAST_FIREcall_mAST.Rad21.deleted_rep2.FIRE.bed
-rw-r--r-- anthony/renlab   94709 2016-07-11 02:55 all_data_FIRE_calls/LG.FIRE.bed
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-rw-r--r-- anthony/renlab  111408 2016-07-11 02:55 all_data_FIRE_calls/IMR90.FIRE.bed
-rw-r--r-- anthony/renlab   82440 2016-07-11 02:55 all_data_FIRE_calls/mNSC_FIREcall_mNSC.Rad21.deleted_rep1.FIRE.bed
-rw-r--r-- anthony/renlab   74310 2016-07-11 02:55 all_data_FIRE_calls/Fraser_HindIII_FIREcall_HindIII_Neuron.FIRE.bed

FitHiC_primary_cohort.tgz

drwxr-xr-x anthony/renlab    0 2016-07-11 22:44 FitHiC_primary_cohort/
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-rw-r--r-- anthony/renlab 1990980 2016-07-09 01:10 FitHiC_primary_cohort/FitHiC_output.SX_chr11.sparse.matrix.gz
-rw-r--r-- anthony/renlab 1971852 2016-07-09 01:10 FitHiC_primary_cohort/FitHiC_output.mes_chr18.sparse.matrix.gz
-rw-r--r-- anthony/renlab 2568160 2016-07-09 01:10 FitHiC_primary_cohort/FitHiC_output.npc_chr23.sparse.matrix.gz
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primary_cohort_compartments.tgz

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-rw-r--r-- anthony/renlab 53344 2016-07-09 01:34 Compartment_primary_cohort/msc.pc.bw
-rw-r--r-- anthony/renlab 53410 2016-07-09 01:34 Compartment_primary_cohort/AD.pc.bw
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-rw-r--r-- anthony/renlab 53414 2016-07-09 01:34 Compartment_primary_cohort/SX.pc.bw
-rw-r--r-- anthony/renlab 53313 2016-07-09 01:34 Compartment_primary_cohort/mes.pc.bw
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-rw-r--r-- anthony/renlab 53310 2016-07-09 01:34 Compartment_primary_cohort/GM12878.pc.bw
-rw-r--r-- anthony/renlab 53459 2016-07-09 01:34 Compartment_primary_cohort/OV.pc.bw
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-rw-r--r-- anthony/renlab 53511 2016-07-09 01:34 Compartment_primary_cohort/CO.pc.bw
-rw-r--r-- anthony/renlab 53326 2016-07-09 01:34 Compartment_primary_cohort/tro.pc.bw
-rw-r--r-- anthony/renlab 53303 2016-07-09 01:34 Compartment_primary_cohort/h1.pc.bw
-rw-r--r-- anthony/renlab 53568 2016-07-09 01:34 Compartment_primary_cohort/LV.pc.bw
-rw-r--r-- anthony/renlab 53448 2016-07-09 01:34 Compartment_primary_cohort/PA.pc.bw
-rw-r--r-- anthony/renlab 53475 2016-07-09 01:34 Compartment_primary_cohort/AO.pc.bw
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-rw-r--r-- anthony/renlab 53517 2016-07-09 01:34 Compartment_primary_cohort/PO.pc.bw
-rw-r--r-- anthony/renlab 53532 2016-07-09 01:34 Compartment_primary_cohort/HC.pc.bw

primary_cohort_rna-seq.tgz

drwxr-xr-x anthony/renlab    0 2016-09-16 22:33 primary_cohort_rna-seq/
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-rw-r--r-- anthony/renlab  10725964 2016-09-16 22:13 primary_cohort_rna-seq/primary_cohort.gencode.hg19.FPKM.matrix
-rw-r--r-- anthony/renlab 268146791 2016-09-16 22:12 primary_cohort_rna-seq/AD3.bw
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primary_cohort_TAD_boundaries.tgz

drwxr-xr-x anthony/renlab    0 2016-07-10 03:43 primary_cohort_TAD_boundaries/
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-rw-r--r-- anthony/renlab 52702 2016-07-10 03:43 primary_cohort_TAD_boundaries/PA.IS.All_boundaries.bed
-rw-r--r-- anthony/renlab 53900 2016-07-10 03:43 primary_cohort_TAD_boundaries/SX1.IS.All_boundaries.bed
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-rw-r--r-- anthony/renlab 59414 2016-07-10 03:43 primary_cohort_TAD_boundaries/MES.IS.All_boundaries.bed
-rw-r--r-- anthony/renlab 49821 2016-07-10 03:43 primary_cohort_TAD_boundaries/LV.IS.All_boundaries.bed
-rw-r--r-- anthony/renlab 57984 2016-07-10 03:43 primary_cohort_TAD_boundaries/PO3.IS.All_boundaries.bed
-rw-r--r-- anthony/renlab 58332 2016-07-10 03:43 primary_cohort_TAD_boundaries/TRO.IS.All_boundaries.bed
-rw-r--r-- anthony/renlab 54449 2016-07-10 03:43 primary_cohort_TAD_boundaries/LI.IS.All_boundaries.bed
-rw-r--r-- anthony/renlab 59948 2016-07-10 03:43 primary_cohort_TAD_boundaries/H1.IS.All_boundaries.bed
-rw-r--r-- anthony/renlab 53456 2016-07-10 03:43 primary_cohort_TAD_boundaries/IMR90.IS.All_boundaries.bed
-rw-r--r-- anthony/renlab 51454 2016-07-10 03:43 primary_cohort_TAD_boundaries/BL.IS.All_boundaries.bed
-rw-r--r-- anthony/renlab 52609 2016-07-10 03:43 primary_cohort_TAD_boundaries/SB.IS.All_boundaries.bed
-rw-r--r-- anthony/renlab 60413 2016-07-10 03:43 primary_cohort_TAD_boundaries/SX3.IS.All_boundaries.bed
-rw-r--r-- anthony/renlab 56964 2016-07-10 03:43 primary_cohort_TAD_boundaries/LG2.IS.All_boundaries.bed
-rw-r--r-- anthony/renlab 55246 2016-07-10 03:43 primary_cohort_TAD_boundaries/GM12878.IS.All_boundaries.bed
-rw-r--r-- anthony/renlab 53277 2016-07-10 03:43 primary_cohort_TAD_boundaries/PO.IS.All_boundaries.bed
-rw-r--r-- anthony/renlab 51842 2016-07-10 03:43 primary_cohort_TAD_boundaries/OV.IS.All_boundaries.bed
-rw-r--r-- anthony/renlab 49917 2016-07-10 03:43 primary_cohort_TAD_boundaries/RV.IS.All_boundaries.bed
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