Created
September 27, 2020 06:53
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| Building DAG of jobs... | |
| Using shell: /usr/local/bin/bash | |
| Provided cluster nodes: 500 | |
| Job counts: | |
| count jobs | |
| 1 add_column_to_bib | |
| 1 targets | |
| 2 | |
| [Sun Sep 27 07:51:11 2020] | |
| rule add_column_to_bib: | |
| input: SampleID_with_genotype_and_metabolite.txt | |
| output: SampleID_with_genotype_and_metabolite_bib_column.txt | |
| jobid: 1 | |
| sed "s/$/ bib/" SampleID_with_genotype_and_metabolite.txt > SampleID_with_genotype_and_metabolite_bib_column.txt | |
| Resuming incomplete job 1 with external jobid '529144 logs/cluster/add_column_to_bib/unique/jobid1_9856e718-c824-4d62-8dc3-de73debd4dc9.out'. | |
| [Predicted exception] BjobsError: bjobs error. | |
| stdout is empty. | |
| stderr = Job <529144> is not found | |
| Resuming... | |
| bjobs failed 1 times. Checking log... | |
| [Predicted exception] BjobsError: bjobs error. | |
| stdout is empty. | |
| stderr = Job <529144> is not found | |
| Resuming... | |
| bjobs failed 1 times. Checking log... | |
| [Predicted exception] BjobsError: bjobs error. | |
| stdout is empty. | |
| stderr = Job <529144> is not found | |
| Resuming... | |
| bjobs failed 1 times. Checking log... | |
| [Predicted exception] BjobsError: bjobs error. | |
| stdout is empty. | |
| stderr = Job <529144> is not found | |
| Resuming... | |
| bjobs failed 1 times. Checking log... | |
| [Predicted exception] BjobsError: bjobs error. | |
| stdout is empty. | |
| stderr = Job <529144> is not found | |
| Resuming... | |
| bjobs failed 1 times. Checking log... | |
| [Predicted exception] BjobsError: bjobs error. | |
| stdout is empty. | |
| stderr = Job <529144> is not found | |
| Resuming... | |
| bjobs failed 1 times. Checking log... | |
| [Predicted exception] BjobsError: bjobs error. | |
| stdout is empty. | |
| stderr = Job <529144> is not found | |
| Resuming... | |
| bjobs failed 1 times. Checking log... | |
| Terminating processes on user request, this might take some time. | |
| Will exit after finishing currently running jobs. | |
| Complete log: /lustre/scratch119/realdata/mdt2/teams/martin/users/tl11/w3/snakemake/.snakemake/log/2020-09-27T075111.551659.snakemake.log |
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