It's been a while. Just a nice process bar here where you can click on the different steps and be presented with information. The box at the top will also animate depending on the steps.
A Pen by Jamie Coulter on CodePen.
Tim Liu liutiming
liutiming
/ Session info for patchwork guide collection
Created
November 27, 2022 00:04
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| <details style="margin-bottom:10px;"> | |
| <summary> | |
| Session info | |
| </summary> | |
| ``` r | |
| sessioninfo::session_info() | |
| #> - Session info -------------------------------------------------------------- | |
| #> hash: motorway, flag: Ethiopia, hand with fingers splayed: medium skin tone | |
| #> |
liutiming
/ deep_learning_with_pytorch_imagesegmentation-1.ipynb
Last active
September 17, 2022 15:23
Deep_Learning_with_PyTorch_ImageSegmentation.ipynb
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
liutiming
/ modified_ancestryplot.R
Created
August 3, 2022 14:24
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| ## 20220612_samples.qc.rename.autosome_ancestryplot.R for KING Ancestry plot, by Zhennan Zhu and Wei-Min Chen | |
| rm(list=ls(all=TRUE)) | |
| library(dplyr) | |
| library(e1071) | |
| options(scipen = 999) | |
| prefix <- "20220612_samples.qc.rename.autosome" | |
| pc <- read.table(paste0(prefix, "pc.txt"), header = TRUE) | |
| phe <- read.table(paste0(prefix, "_popref.txt"), header = TRUE, stringsAsFactors = FALSE) | |
| Population <- c(as.character(phe$Population), rep(NA, (nrow(pc) - nrow(phe)))) | |
| dat <- cbind(pc, Population) |
liutiming
/ css-only-order-process-steps.markdown
Created
July 24, 2021 12:14
CSS only order process steps
liutiming
/ 20200930_2012_snakemake_try.log
Created
September 30, 2020 19:21
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Building DAG of jobs... | |
| Using shell: /usr/local/bin/bash | |
| Provided cluster nodes: 500 | |
| Job counts: | |
| count jobs | |
| 1 targets | |
| 1 try_expand | |
| 2 | |
| [Wed Sep 30 20:12:35 2020] |
liutiming
/ hs_err_pid31802.log
Created
September 27, 2020 07:09
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # | |
| # There is insufficient memory for the Java Runtime Environment to continue. | |
| # Native memory allocation (malloc) failed to allocate 32744 bytes for ChunkPool::allocate | |
| # Possible reasons: | |
| # The system is out of physical RAM or swap space | |
| # The process is running with CompressedOops enabled, and the Java Heap may be blocking the growth of the native heap | |
| # Possible solutions: | |
| # Reduce memory load on the system | |
| # Increase physical memory or swap space | |
| # Check if swap backing store is full |
liutiming
/ snakemake.log
Created
September 27, 2020 06:53
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Building DAG of jobs... | |
| Using shell: /usr/local/bin/bash | |
| Provided cluster nodes: 500 | |
| Job counts: | |
| count jobs | |
| 1 add_column_to_bib | |
| 1 targets | |
| 2 | |
| [Sun Sep 27 07:51:11 2020] |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| __default__: | |
| - "-G team281" | |
| - "-R "select[mem>30000] rusage[mem=30000]" -M 30000" | |
| - "-q normal" | |
| - "-e /nfs/users/nfs_t/tl11/analysis/w3/snakemake/error.log" | |
| - "-o /nfs/users/nfs_t/tl11/analysis/w3/snakemake/output.log" | |
| - "-J snakemake_trial" |