chapmanb

small RNA-seq with bcbio-nextgen

It would be good to have a few short sentences of introduction here to orient readers and give them an overview of the whole post.

• Why is small RNA-seq analysis important
• What types of analysis do you provide (this is in the pipeline section below), in a sentence.
• What is bcbio

ohofmann

```{r custom}
library(VariantAnnotation)
library(ggplot2)
library(pheatmap)
library(scales)
library(gridExtra)
library(gtools)
library(RColorBrewer)
library(knitr)
library(tidyr)

rufuspollock

#!/usr/bin/env python
# A simple Python script to convert csv files to sqlite (with type guessing)
#
# @author: Rufus Pollock
# Placed in the Public Domain
import csv
import sqlite3

def convert(filepath_or_fileobj, dbpath, table='data'):
    if isinstance(filepath_or_fileobj, basestring):

drj42

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