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export function sayHello() {
console.log("hello from github gist")
}
import { assert } from "jsr:@std/assert@0.225.3";
import * as fflate from "npm:fflate@0.8.2";
import * as pako from "npm:pako@2.1.0";
async function decode_stream(stream: ReadableStream) {
const reader = stream
.pipeThrough(new DecompressionStream("gzip"))
.getReader();
let bytes: Uint8Array;
{
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manzt / hg-tile.py
Created March 26, 2024 15:09
Map higlass tilesets to multiscale zarr
import base64
import dataclasses
import httpx
import zarr
import zarr.storage
import zarr.util
def get_tile_size(info: dict) -> int:
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manzt / gapminder-2023.csv
Created November 19, 2023 23:59
Gapminder dataset 2023
We can't make this file beautiful and searchable because it's too large.
country,year,population,gdp_per_capita,life_expectancy,continent
Afghanistan,1800,3280000,683,28.21,Asia
Afghanistan,1801,3280000,683,28.2,Asia
Afghanistan,1802,3280000,683,28.19,Asia
Afghanistan,1803,3280000,683,28.18,Asia
Afghanistan,1804,3280000,683,28.17,Asia
Afghanistan,1805,3280000,683,28.16,Asia
Afghanistan,1806,3280000,683,28.15,Asia
Afghanistan,1807,3280000,683,28.14,Asia
Afghanistan,1808,3280000,683,28.13,Asia
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@manzt
manzt / my-ts-monorepo.md
Last active June 7, 2024 06:56
A minimal setup for TypeScript monorepo libraries

My Minimal TypeScript Monorepo Setup for ESM Libraries

After a deep dive looking up best practices for TypeScript monorepos recently, I couldn't find anything that suited my needs:

  1. Publish individual (typed) packages to NPM with minimal config.
  2. Supports fast unit testing that spans the entire project (e.g., via Vitest)
  3. Ability to have an interactive playground to experiment with the API in a real-time (e.g., via Vite)

Most solutions point to TypeScript project references,

@manzt
manzt / README.md
Created August 31, 2023 21:54
minimal higlass + vite

minimal higlass vite

pnpm install
pnpm dev
import anywidget
import traitlets
class ExampleWidget(anywidget.AnyWidget):
_esm = """
export function render({ model, el }) {
el.classList.add("custom-widget");
function valueChanged() {
el.textContent = model.get("value");
}
@manzt
manzt / index.html
Last active May 18, 2023 16:27
An animated observable line plot
<!doctype html>
<html lang="en">
<head>
<meta charset="utf-8">
<title>Interactive Observable Plot</title>
<script type="module" src="/main.js"></script>
</head>
<style>
:root {
font-family: sans-serif;
@manzt
manzt / ts-info.ts
Last active May 3, 2023 20:33
some (incomplete) types for HiGlass tilesets
type ChromSizes = [name: string, length: number][]
type ChromName = unknown;
type TilesetInfo = {};
type Bam = {
min_pos: [number];
max_pos: [number];
max_zoom: number;