Mario Kostelac mariokostelac
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| var fs = require('fs'); | |
| var filename = "/tmp/test"; | |
| exports.handler = function(event, context) { | |
| fs.writeFile(filename, JSON.stringify(context), function(err) { | |
| if(err) { | |
| return console.log(err); | |
| } | |
| fs.readFile(filename, function(err, data) { |
mariokostelac
/ -
Created
December 20, 2015 12:57
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| 1| 433 (2.56%) ----------------------------------------------------- | |
| 2| 132 (0.78%) ---------------- | |
| 3| 149 (0.88%) ------------------- | |
| 4| 134 (0.79%) ----------------- | |
| 5| 128 (0.76%) ---------------- | |
| 6| 140 (0.83%) ----------------- | |
| 7| 124 (0.73%) --------------- | |
| 8| 121 (0.72%) --------------- | |
| 10| 149 (0.88%) ------------------- | |
| 11| 139 (0.82%) ----------------- |
mariokostelac
/ -
Created
December 20, 2015 12:54
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| 1|1057 (6.26%) ---------------------------------------------------------------------------------------------------------------------------------------- | |
| 2| 147 (0.87%) ------------------- | |
| 3| 138 (0.82%) ------------------ | |
| 4| 124 (0.73%) ---------------- | |
| 5| 138 (0.82%) ------------------ | |
| 6| 100 (0.59%) ------------- | |
| 7| 115 (0.68%) --------------- | |
| 8| 122 (0.72%) ---------------- | |
| 9| 155 (0.92%) -------------------- | |
| 10| 170 (1.01%) ---------------------- |
mariokostelac
/ -
Created
December 20, 2015 12:53
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| [0m 1|[32m1057 [35m(6.26%) [34m----------------------------------------------------------------------------------------------------------------------------------------[0m | |
| [0m 2|[32m 147 [35m(0.87%) [34m-------------------[0m | |
| [0m 3|[32m 138 [35m(0.82%) [34m------------------[0m | |
| [0m 4|[32m 124 [35m(0.73%) [34m----------------[0m | |
| [0m 5|[32m 138 [35m(0.82%) [34m------------------[0m | |
| [0m 6|[32m 100 [35m(0.59%) [34m-------------[0m | |
| [0m 7|[32m 115 [35m(0.68%) [34m---------------[0m | |
| [0m 8|[32m 122 [35m(0.72%) [34m----------------[0m | |
| [0m 9|[32m 155 [35m(0.92%) [34m--------------------[0m | |
| [0m10|[32m 170 [35m(1.01%) [34m----------------------[0m |
mariokostelac
/ out.report
Created
December 19, 2015 17:57
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| /Users/mario/bioinf/nmeth/../reference/escherichia_coli_NCBI.fa /Users/mario/bioinf/nmeth/contigs_fast.fasta | |
| NUCMER | |
| [REF] [QRY] | |
| [Sequences] | |
| TotalSeqs 1 1 | |
| AlignedSeqs 1(100.00%) 1(100.00%) | |
| UnalignedSeqs 0(0.00%) 0(0.00%) | |
| [Bases] |
mariokostelac
/ make.log
Created
November 11, 2015 20:27
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| mkdir -p obj_test/src/alignment/ | |
| g++-4.8 -static-libgcc -static-libstdc++ -D__cplusplus=201103L -I"./src/" -I"/usr/include/" -I"libs/libdivsufsort-2.0.1/build/include" -I"libs/seqan-library-1.4.2/include" -O3 -fdata-sections -ffunction-sections -c -fmessage-length=0 -ffreestanding -fopenmp -m64 -std=c++11 -Werror=return-type -Wuninitialized -pthread -march=native -o obj_test/src/alignment/opal.o src/alignment/opal.cpp | |
| /var/folders/1v/mxp10j955jzc7s812dt7l9f80000gn/T//cc6Iljv3.s:156:no such instruction: `vpxor %xmm12, %xmm12,%xmm12' | |
| /var/folders/1v/mxp10j955jzc7s812dt7l9f80000gn/T//cc6Iljv3.s:158:no such instruction: `vmovd %eax, %xmm0' | |
| /var/folders/1v/mxp10j955jzc7s812dt7l9f80000gn/T//cc6Iljv3.s:162:no such instruction: `vpshufb %xmm12, %xmm0,%xmm12' | |
| /var/folders/1v/mxp10j955jzc7s812dt7l9f80000gn/T//cc6Iljv3.s:206:no such instruction: `vpxor %xmm0, %xmm0,%xmm0' | |
| /var/folders/1v/mxp10j955jzc7s812dt7l9f80000gn/T//cc6Iljv3.s:212:no such instruction: `vmovd %r14d, %xmm1' | |
| /var/folders/1v/mxp10j955jzc7s812dt7l9f8000 |
mariokostelac
/ out.report
Created
October 26, 2015 11:59
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| /data/reference/escherichia_coli_NCBI.fa /data/simulated_datasets/ecolli_15x/escherichia_coli_NCBI-e0.00/layout_20151026_115352/dnadiff_results/../contigs_fast.fasta | |
| NUCMER | |
| [REF] [QRY] | |
| [Sequences] | |
| TotalSeqs 1 1 | |
| AlignedSeqs 1(100.00%) 1(100.00%) | |
| UnalignedSeqs 0(0.00%) 0(0.00%) | |
| [Bases] |
mariokostelac
/ -
Created
September 27, 2015 22:13
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| 20| 10 (0.15%) --- | |
| 21| 21 (0.31%) ------ | |
| 22| 45 (0.66%) ------------ | |
| 23| 76 (1.12%) -------------------- | |
| 24|130 (1.92%) ----------------------------------- | |
| 25|200 (2.95%) ----------------------------------------------------- | |
| 26|258 (3.81%) -------------------------------------------------------------------- | |
| 27|308 (4.54%) --------------------------------------------------------------------------------- | |
| 28|360 (5.31%) ----------------------------------------------------------------------------------------------- | |
| 29|444 (6.55%) --------------------------------------------------------------------------------------------------------------------- |
mariokostelac
/ -
Created
September 27, 2015 22:13
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| [0m20|[32m 10 [35m(0.15%) [34m---[0m | |
| [0m21|[32m 21 [35m(0.31%) [34m------[0m | |
| [0m22|[32m 45 [35m(0.66%) [34m------------[0m | |
| [0m23|[32m 76 [35m(1.12%) [34m--------------------[0m | |
| [0m24|[32m130 [35m(1.92%) [34m-----------------------------------[0m | |
| [0m25|[32m200 [35m(2.95%) [34m-----------------------------------------------------[0m | |
| [0m26|[32m258 [35m(3.81%) [34m--------------------------------------------------------------------[0m | |
| [0m27|[32m308 [35m(4.54%) [34m---------------------------------------------------------------------------------[0m | |
| [0m28|[32m360 [35m(5.31%) [34m-----------------------------------------------------------------------------------------------[0m | |
| [0m29|[32m444 [35m(6.55%) [34m---------------------------------------------------------------------------------------------------------------------[0m |
mariokostelac
/ mhap2partial.sh
Last active
September 15, 2015 21:49
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
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| #!/usr/bin/env bash | |
| awk ' | |
| {printf "%d\t", $1 + 1} #Aiid | |
| {printf "%d\t", $2 + 1} #Biid | |
| {if ($5 == $9) { # orient | |
| printf "f\t" | |
| } else { | |
| printf "r\t" | |
| }} |