ncapi-install-recipe.sh

## to support github.com/hypertidyc/ncapi
## distilled from https://github.com/mdsumner/nectar/blob/master/r-spatial.sh
## - better would be Docker/Rocker, some geospatial parts

## key for apt-get update, see http://cran.r-project.org/bin/linux/ubuntu/README
## this echo must be done as root
echo 'deb https://cran.csiro.au/bin/linux/ubuntu xenial/' >> /etc/apt/sources.list
apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9

## TODO: hone to just what libnetcdf-dev needs
## updated GDAL - this assists NetCDF install by getting the OpenDAP pre-reqs
## https://launchpad.net/~ubuntugis/+archive/ubuntu/ubuntugis-unstable
add-apt-repository ppa:ubuntugis/ubuntugis-unstable --yes

apt update 
apt upgrade --assume-yes

## Install 3rd parties

## NetCDF and geo-spatial wunderkind
## gdal obviously not needed, but not clear yet what that on-installs that helps NetCDF
apt install libnetcdf-dev proj-bin  libproj-dev libgdal-dev gdal-bin libgeos-dev  libssl-dev   libudunits2-dev  r-base r-base-dev --assume-yes
   
Rscript -e 'install.packages(c("Rcpp", "devtools", "RNetCDF", "ncdf4"), "/usr/local/lib/R/site-library")'