michaelbarton

* Topic
|---+ Biological data resources
|    |---+ Laboratory resources
|        |---> Microarrays
|        |---> Cell culture resources
|        +---> Medical informatics resources
|    +---+ Biological science resources
        |---> Cell biology resources
        |---+ Developmental biology resources
|            +---> Embryology resources

michaelbarton

(use '[clojure.java.io :only [reader]])
(use '[clojure.string  :only [split]])

(def read-keys [:id :status :pos-contig :pos-position :pos-strand :neg-contig :neg-position :neg-strand])

(defn split-line [x]
  (split x #"\t"))

(defn create-read [x]
  (with-meta 

michaelbarton

# you'd obviously have more settings somewhere
set :scm,        :git
set :repository, "git@github.com:defunkt/github.git"
set :branch,     "origin/master"
set :migrate_target, :current

set(:latest_release)  { fetch(:current_path) }
set(:release_path)    { fetch(:current_path) }
set(:current_release) { fetch(:current_path) }

michaelbarton

require 'www/mechanize'

# Patches WWW::Mechanize for Cucumber + Webrat

module WWW
  class Mechanize
    def self.log_disabled
      @@log ||= Logger.new(STDOUT)
    end

michaelbarton

BLAST protein YDL177C
BLAST dna YDL177C