mikebind

I: Requesting Association
I: Association Accepted
Association successful
I: Sending Echo Request: MsgID 1
I: Releasing Association
I: Association Aborted
D: Request Parameters:
D: ======================= OUTGOING A-ASSOCIATE-RQ PDU ========================
D: Our Implementation Class UID:      1.2.826.0.1.3680043.9.3811.2.0.2
D: Our Implementation Version Name:   PYNETDICOM_202

mikebind

import numpy as np
import slicer, vtk


def getVolumeCoordinateTransformMatrixDict(volNode):
    import numpy as np

    def translationMatrix(point):
        trMat = np.eye(4)
        trMat[0:3, 3] = (*point,)

mikebind

class SomeModuleLogic(ScriptedLoadableModuleLogic):
    def exportRedSliceAsDicom(self, patientNameSH, xRangeMm=150, yRangeMm=150, zRangeMm=0.5, outputFolderPath=None, dicomTagDict=None):
        """ This function creates an ROI centered on the center of the Red slice view, and 
        with axes aligned with that slice view's slice, and with thickness specified by zRangeMm.
        This ROI is then used to crop the red slice's current background image volume to slices
        in this orientation (I choose the zRange such that this results in a single slice by 
        setting it to close to the minimum voxel side length), and export the result to DICOM.
        In order to export to DICOM, a patient and study need to be created in the subject hierarchy,
        these are done the subject name given in patientNameSH and with study name "SingleSliceExport".

mikebind

import os
import unittest
import logging
import vtk, qt, ctk, slicer
import numpy as np
from slicer.ScriptedLoadableModule import *
from slicer.util import VTKObservationMixin

#
# StitchVolumes

mikebind

import logging
import os
import unittest
import vtk, qt, ctk, slicer
import SegmentStatistics
from slicer.ScriptedLoadableModule import *
from slicer.util import TESTING_DATA_URL
from slicer.util import VTKObservationMixin

mikebind

import logging
import os
import unittest
import vtk, qt, ctk, slicer
import SegmentStatistics
from slicer.ScriptedLoadableModule import *
from slicer.util import TESTING_DATA_URL
from slicer.util import VTKObservationMixin

mikebind

def shiftVolumeRendering(volumePropertyNode, xOffset=0):
  """ Shift the scalar opacity control point values by an 
  offset value (similar to moving the "Shift" slider in the volume rendering module)
  """
  volProp = volumePropertyNode.GetVolumeProperty()
  scalarOpacity = volProp.GetScalarOpacity() # this is a vtkPiecewiseFunction
  pointIdx = 0
  opacityPointValues = [] # list to hold values
  # Gather Existing Values
  for pointIdx in range( scalarOpacity.GetSize() ):

mikebind

import os
import unittest
import logging
import vtk, qt, ctk, slicer
from slicer.ScriptedLoadableModule import *
from slicer.util import VTKObservationMixin

#
# AutoCompleteCrash
#