Created
September 23, 2022 23:26
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Call sourmash ani in C++
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#include <Python.h> | |
#include <iostream> | |
using namespace std; | |
class toANI { | |
public: | |
PyObject* moduleMainString, * moduleMain, * func; | |
toANI() { | |
Py_Initialize(); | |
PyRun_SimpleString("from sourmash.distance_utils import containment_to_distance\n"); | |
moduleMainString = PyUnicode_FromString("__main__"); | |
moduleMain = PyImport_Import(moduleMainString); | |
PyRun_SimpleString("def to_ani(a,b,c,d): return containment_to_distance(a, b, c, n_unique_kmers=d).ani"); | |
func = PyObject_GetAttrString(moduleMain, "to_ani"); | |
} | |
float calculate(float containment, long kSize, long scale, long n_unique_kmers) { | |
PyObject* args = PyTuple_Pack(4, | |
PyFloat_FromDouble(containment), | |
PyLong_FromLong(kSize), | |
PyLong_FromLong(scale), | |
PyLong_FromLong(n_unique_kmers) | |
); | |
PyObject* result = PyObject_CallObject(func, args); | |
return PyFloat_AsDouble(result); | |
} | |
}; | |
int main() { | |
toANI ANI; | |
int kSize = 31; | |
float containment = 0.0174494; | |
int scale = 1000; | |
int n_unique_kmers = 4996000; | |
float ani = ANI.calculate(containment, kSize, scale, n_unique_kmers); | |
cout << "ani= " << ani << endl; | |
} |
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