mr-eyes

function addOrUpdateAgendaBarImproved() {
  var presentation = SlidesApp.getActivePresentation();
  var slides = presentation.getSlides();
  var sections = [
    { name: 'Motivation', slides: [2, 3] },
    { name: 'Scientific Background', slides: [4, 5] },
    { name: 'Methods', slides: [6, 7] },
    { name: 'Use case 1', slides: [8, 11] },
    { name: 'Use Case 2', slides: [12, 15] },
    { name: 'Future Directions', slides: [16, 17] },

mr-eyes

name: kspider
channels:
  - conda-forge
  - bioconda
dependencies:
  - python=3.9
  - pip
  - sourmash
  - pip:
    - kSpider

mr-eyes

#include <Python.h>
#include <iostream>

using namespace std;

class toANI {
public:
    PyObject* moduleMainString, * moduleMain, * func;

    toANI() {

mr-eyes

import retworkx as rx
from tqdm import tqdm
import argparse

parser = argparse.ArgumentParser()

parser.add_argument('--csv', type=str, required=True, help="pairwise csv file")
parser.add_argument('--cutoff', type=int, required=True,
                    help="clustering threshold (0:100)")
parser.add_argument('--mode', type=str, required=True, choices=['ani', 'cont'],

mr-eyes

"""
Using the new NCBI's datasets API to get the nearest available reference genomes for a given taxon or organism name.

Input: TAX_ID or Name

Output:
    1- The nearest organism with available reference genomes
    2- Accessions of the reference genomes

Requirements:

mr-eyes

parent	metadata
p1	DB_A
p2	DB_B
p3	DB_C
p4	DB_A
p5	DB_A
p6	DB_A
p7	DB_B
p8	DB_C
p9	DB_C

mr-eyes

# Validate kProcessor 1 index

from itertools import groupby
import os
import kProcessor as kp
import hashlib



class IntegralHasher:

mr-eyes

"""
Input: Unitigs Fasta file generated from BCALM.
Output: CSV File with the following format

A. Column(1): Connected Component ID
B. Column(2:): Unitigs ID(s)

Run:
python unitigs_to_connected_components.py <unitigs_path>
"""

mr-eyes

mr-eyes

// to compile: gcc this_prog.c -lz
#include <zlib.h>
#include <cstdio>
#include "kseq.h"
#include <iostream>
#include <vector>

KSEQ_INIT(gzFile, gzread)

using namespace std;