Mohamed Abuelanin mr-eyes

## Unlinking_Low_Complex_contigs.ipynb

      
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                mr-eyes
                / Unlinking_Low_Complex_contigs.ipynb
            
            
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              September 23, 2018 13:21
            
          
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## filter_table.py
import sys

if len(sys.argv) < 3:
    sys.exit("run: python filter_table.py <file> <threshold>")

else:
    file_path = sys.argv[1]
    threshold = int(sys.argv[2])

with open(file_path, 'r') as f:

## cdhit_filter.py
"""
Exclude CDHIT Clusters that contains number of sequences below a certain threshold
"""


import sys

args = sys.argv

if len(args) < 3:

## DNA_encoding_decoding.ipynb

      
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                mr-eyes
                / DNA_encoding_decoding.ipynb
            
            
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              June 30, 2019 22:03
            
              
                Convert image to DNA & Convert DNA to Image
              
          
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## genotype_freq.py
import sys
import gzip

class GenoFreq:

    def __init__(self, file_name):
        self.file_name = file_name
        self.all_genotypes = self.get_all_genotypes()

    def get_all_genotypes(self):

## dbEST_report_to_fasta.py
import textwrap
import sys
import os
import gzip


BLOSUM = {
    "A" : "A",
    "C" : "C",
    "G" : "G",

## LAB-1-Introduction-to-Python-Programming.ipynb

      
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                mr-eyes
                / LAB-1-Introduction-to-Python-Programming.ipynb
            
            
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              October 14, 2019 15:57
            
          
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## Data1.txt
3.2596	1.4977	-1
3.9733	1.2995	-1
2.0559	1.5692	-1
2.0003	2.4876	-1
-1.433	4.1727	-1
2.736	1.4522	-1
3.2213	1.8164	-1
1.1169	2.7368	-1
3.0756	1.876	-1
4.233	1.8611	-1

## main.cpp
/*

simple random kmers generator with storage in parallel hash map.
clone: https://github.com/greg7mdp/parallel-hashmap.git

g++ -Ofast -O3 main.cpp

*/


## Assignment 4.html
<!DOCTYPE html>
<html>
<head><meta charset="utf-8" />

<title>Assignment 4</title>

<script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.1.10/require.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/2.0.3/jquery.min.js"></script>
	import sys

	if len(sys.argv) < 3:
	sys.exit("run: python filter_table.py <file> <threshold>")

	else:
	file_path = sys.argv[1]
	threshold = int(sys.argv[2])

	with open(file_path, 'r') as f:
	"""
	Exclude CDHIT Clusters that contains number of sequences below a certain threshold
	"""


	import sys

	args = sys.argv

	if len(args) < 3:
	import sys
	import gzip

	class GenoFreq:

	def __init__(self, file_name):
	self.file_name = file_name
	self.all_genotypes = self.get_all_genotypes()

	def get_all_genotypes(self):
	import textwrap
	import sys
	import os
	import gzip


	BLOSUM = {
	"A" : "A",
	"C" : "C",
	"G" : "G",
	3.2596 1.4977 -1
	3.9733 1.2995 -1
	2.0559 1.5692 -1
	2.0003 2.4876 -1
	-1.433 4.1727 -1
	2.736 1.4522 -1
	3.2213 1.8164 -1
	1.1169 2.7368 -1
	3.0756 1.876 -1
	4.233 1.8611 -1
	/*

	simple random kmers generator with storage in parallel hash map.
	clone: https://github.com/greg7mdp/parallel-hashmap.git

	g++ -Ofast -O3 main.cpp

	*/
	<!DOCTYPE html>
	<html>
	<head><meta charset="utf-8" />

	<title>Assignment 4</title>

	<script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.1.10/require.min.js"></script>
	<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/2.0.3/jquery.min.js"></script>