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Nathan S. Watson-Haigh nathanhaigh

  • Alkahest Inc.
  • Adelaide, Australia
  • 15:03 (UTC +09:30)
  • X @watsonhaigh
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@ar0ch
ar0ch / addblastdb.sh
Last active May 6, 2022 03:38
Automatically create blastdb + restart sequence server
#!/bin/bash
j=$(basename $1)
/usr/bin/makeblastdb -in $1 -dbtype $2 -title $j
killall sequenceserver
/usr/bin/screen -dmS ss /usr/local/bin/sequenceserver -d=/home//blast/public/blast/ -H 127.0.0.1 -p 4567 > /dev/null
exit
@rcoup
rcoup / rsync_parallel.sh
Created April 10, 2013 21:52
Parallel-ise an rsync transfer when you want multiple concurrent transfers happening,
#!/bin/bash
set -e
# Usage:
# rsync_parallel.sh [--parallel=N] [rsync args...]
#
# Options:
# --parallel=N Use N parallel processes for transfer. Defaults to 10.
#
# Notes:
@lemonlatte
lemonlatte / addUser.sh
Created July 9, 2012 03:22
Login authentication from a LDAP server
#!/bin/sh
dn='dc=math,dc=nccu,dc=edu,dc=tw'
username='jim.yeh'
uid='jim.yeh'
gid='student'
cat << EOF > user_example.ldif
dn: cn=$username,ou=users,ou=login,$dn
@padcom
padcom / install.sh
Created August 3, 2011 09:26
Gitorious installation on Ubuntu 12.04
#!/bin/bash
#------------------------------------------------------------------------------
# SETTINGS
#------------------------------------------------------------------------------
MYSQL_ROOT_PASSWORD=password
MYSQL_GITORIOUS_PASSWORD=password
GITORIOUS_HOST=gitorious
SYSADMIN=sysadmin
@stwalkerster
stwalkerster / sfnet2github.sh
Created May 17, 2011 17:18
SourceForge.net svn repo to github git repo import script

Licence (MIT Licence)

Copyright (c) 2011 Simon Walker

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

sudo apt-get install libtool
git clone git://dnaa.git.sourceforge.net/gitroot/dnaa/dnaa dnaa-git
cd dnaa-git
# bfast required. see above gist
cp -r ../bfast-git ./bfast
# samtools require. see above gist.
cp -r ../samtools-svn/ ./samtools
sh autogen.sh && ./configure && make && sudo make install