Clemens Schmid nevrome
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nevrome
/ R_stream_experiment.R
Last active
August 25, 2021 09:29
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| # get some large EIGENSTRAT format data from | |
| # https://edmond.mpdl.mpg.de/imeji/collection/OBNPDy16CfZWPhz0?q= | |
| ind_file <- tempfile() | |
| geno_file <- tempfile() | |
| download.file( | |
| "https://edmond.mpdl.mpg.de/imeji/file/d7/32/34/70-96ac-4a64-8eb2-c7d6db355d4a/0/original/77fa944dc4369018c6478dcec3f6ced6.txt?filename=Wang2019Caucasus.ind.txt", | |
| destfile = ind_file | |
| ) | |
| download.file( | |
| "https://edmond.mpdl.mpg.de/imeji/file/ea/ea/02/b4-4124-43f4-a458-3cf728f8e7bc/0/original/2f35c3d890e8456ac634d18ee45e6c27.txt?filename=Wang2019Caucasus.geno.txt", |
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| Sample1 [1100±30] | |
| Sa2 [3200±50] | |
| Sa3 [1400±20] | |
| Sa4 [2000±30] | |
| Sa6 [133413±70] | |
| Sa7 [1300±30] | |
| Sample9 [1300±50] | |
| S8 [1600±30] |
nevrome
/ experiment.R
Last active
May 6, 2021 12:58
An experiment with the lambda.r R package (Haskell and R code)
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| library(lambda.r) | |
| FruitSet("LAS") %as% "LAS" | |
| FruitSet("SAS") %as% "SAS" | |
| FruitSet("OFS") %as% "OFS" | |
| FruitSetList(...) %::% FruitSet... : FruitSetList | |
| FruitSetList(...) %as% asFruitSetList(list(...)) | |
| asFruitSetList(xs) %::% list : FruitSetList |
nevrome
/ world_map_ascii.R
Last active
August 8, 2022 13:45
R script to plot an ASCII world map with highlighted positions
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| # . . ... ........... . ... | |
| #. ................. . .. ..... ...... ..... ....................... | |
| # . .......... ... ... .......................... . | |
| # ............. . ............................... | |
| # ............ .. X .. X.... ................. | |
| # ....... ..... .. ................... | |
| # .. . ............ .... .......... | |
| # . ............. . .. . | |
| # ..... .......... .. . | |
| # .......... ...... . .. |
nevrome
/ elevatr_rayshader_ggplot2.R
Last active
January 17, 2021 08:00
R script to get a digital elevation model with sf and elevatr, create a hillshaded raster with rayshader and plot it with ggplot2 and ggspatial
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| library(magrittr) | |
| library(ggplot2) | |
| library(rayshader) | |
| #### get some point data of c14 dates from Switzerland (with c14bazAAR) #### | |
| c14dates <- c14bazAAR::get_RADON() %>% | |
| dplyr::filter( | |
| country == "Switzerland", | |
| culture == "Cortaillod" | |
| ) %>% |
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| library(httr) | |
| library(magrittr) | |
| library(tidyverse) | |
| clientlogin <- function(user, pw) { | |
| # get login token | |
| token <- httr::modify_url( | |
| "http://127.0.0.1:8080/w/api.php", | |
| query = list( | |
| action = "login", |