pgm

import argparse
import sqlite3
import sys
import numpy as np
import pandas as pd


def main():
    parser = argparse.ArgumentParser()
    parser.add_argument("in_csv_0")

slavailn

library("ChIPpeakAnno")
library("GenomicRanges")
library("org.At.tair.db")
library("TxDb.Athaliana.BioMart.plantsmart28")
library("biomaRt")

# Annotate genomic intervals in bed format using ChIPpeakAnno 
# This script was designed for Arabidopsis, but can be easily changed for
# any other organism available through biomaRt

arraytools

################################################################################
#
# R.nanorc -- nano syntax-highlighting file for R
#
# Origin: This file is part of the pkgutils package for R.
#
# Usage: This file should be placed in a directory such as /usr/share/nano/ (on
#   Ubuntu 12.04). That nano uses syntax highlighting at all might need to be
#   enabled separately.
#

pkuczynski

#!/bin/sh
parse_yaml() {
   local prefix=$2
   local s='[[:space:]]*' w='[a-zA-Z0-9_]*' fs=$(echo @|tr @ '\034')
   sed -ne "s|^\($s\)\($w\)$s:$s\"\(.*\)\"$s\$|\1$fs\2$fs\3|p" \
        -e "s|^\($s\)\($w\)$s:$s\(.*\)$s\$|\1$fs\2$fs\3|p"  $1 |
   awk -F$fs '{
      indent = length($1)/2;
      vname[indent] = $2;
      for (i in vname) {if (i > indent) {delete vname[i]}}