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Özcan Esen ozcan

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@ozcan
ozcan / meta.yaml
Last active August 28, 2019 18:55
package:
name: anvio-minimal
version: {{ version }}
source:
url: {{ url }}
sha256: {{ sha256 }}
build:
@ozcan
ozcan / scroll_toc.js
Created February 26, 2018 21:19
// Scrolling changes background-color of li element in table-of-contents
$(document).ready(function() {
var screenHeight = window.innerHeight || document.documentElement.clientHeight || document.body.clientHeight
window.addEventListener('scroll', function(event) {
if (!$('#table-of-contents').length)
return;
var min_offset = null;
var target_id = null;
@ozcan
ozcan / anvio.rb
Created August 3, 2017 16:27
class Anvio < Formula
include Language::Python::Virtualenv
desc "Analysis and visualization platform for ‘omics data."
homepage "http://merenlab.org/projects/anvio/"
url "https://files.pythonhosted.org/packages/1a/f4/e75b895b3348ec7d0d21e220735d0f9dd0ea2e67ef9a6ebb9c92bd1d7593/anvio-2.4.0.tar.gz"
sha256 "0f2b3dfe92dc94f097bc9690f4d3e5d9b9320621404fc9cf7c752827e9d09e93"
head "https://github.com/merenlab/anvio.git"
bottle do
sha256 "dc58f4fef58489b6c2e86fdfb33ac694dcfd1c8c28e0f6331c72fb823c83b9cb" => :sierra
@ozcan
ozcan / 03.pip
Created August 2, 2017 20:07
2017-08-02 14:43:52 -0400
/home/linuxbrew/.linuxbrew/Cellar/anvio/2.4.0/libexec/bin/pip
install
-v
--no-deps
--no-binary
:all:
--ignore-installed
/tmp/anvio--numpy-20170802-32469-cklz1f/numpy-1.12.1
@ozcan
ozcan / gist:1090190475514f490ab4ee6d5dcaa645
Created August 2, 2017 01:14
ENV["LAPACK"] = "#{Formula["openblas"].opt_lib}"
@ozcan
ozcan / anvio.rb
Created May 8, 2017 16:04
class Anvio < Formula
include Language::Python::Virtualenv
desc "Analysis and visualization platform for ‘omics data."
homepage "http://merenlab.org/projects/anvio/"
url "https://pypi.python.org/packages/4b/b0/28e526dd0473c45235da36d3d24943f1f6f8d33d232d69b337c4f5ed4955/anvio-2.3.1.tar.gz"
sha256 "d37cd3a4af1f91260e02e8457e995d588fb011541c9032352d5c2c9facee4de0"
head "https://github.com/merenlab/anvio.git"
bottle do
sha256 "ff88e7e3c589b2ac9ac70b27407154d26993bfd552568047818e85e3cf70e8a3" => :sierra
@ozcan
ozcan / Dockerfile
Last active April 20, 2017 17:47
FROM ubuntu:xenial
ENV ANVIO_VERSION 2.3.0
ENV DEBIAN_FRONTEND noninteractive
RUN locale-gen en_US.UTF-8 && echo "export LC_ALL=\"en_US.UTF-8\"" >> /root/.bashrc
RUN apt-get update \
&& apt-get install -y --no-install-recommends \
@ozcan
ozcan / test.svg
Created March 16, 2017 20:35
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@ozcan
ozcan / anvio.rb
Last active March 7, 2017 22:21
class Anvio < Formula
include Language::Python::Virtualenv
desc "Analysis and visualization platform for ‘omics data."
homepage "http://merenlab.org/projects/anvio/"
url "https://pypi.python.org/packages/99/bc/f85a61d914cdc19ada9dc53bda2e534cd6d44bbd4b26e236f91adae4520f/anvio-2.2.0.tar.gz"
sha256 "1016fe695134aa2d8e20202c08f4a95757d52406cd5340602e2f83aabcdb2c6b"
head "https://github.com/merenlab/anvio.git"
# doi "10.7717/peerj.1319"
# tag "bioinformatics"
@ozcan
ozcan / matrix_layer_rotation.py
Created August 31, 2016 22:56
params = list(map(int, input().strip().split(" ")))
m, n, r = params[0], params[1], params[2]
matrix = []
outmatrix = []
for i in range(m):
matrix.append(list(map(int, input().strip().split(" "))))
outmatrix.append([0] * n)
output = ""