Dockerfile

FROM ubuntu:xenial

ENV ANVIO_VERSION 2.3.0

ENV DEBIAN_FRONTEND noninteractive

RUN locale-gen en_US.UTF-8 && echo "export LC_ALL=\"en_US.UTF-8\"" >> /root/.bashrc

RUN apt-get update \ 
    && apt-get install -y --no-install-recommends \
        build-essential \
        gsl-bin \
        hmmer \
        libgsl-dbg \
        libgsl-dev \
        libgsl2 \
        python3 \
        python3-pip \
        python3-dev \
        python3-numpy \
        python3-scipy \
        sqlite3 \
        wget \
        bsdmainutils \
        libblas-dev \
        liblapack-dev \
        libatlas-base-dev \
        gfortran \
        zlib1g-dev \
        libhdf5-serial-dev \
        libhdf5-dev \
        mcl \
        ncbi-blast+ \
        muscle \
    && mkdir -p /tmp/build \
    && wget https://github.com/bbuchfink/diamond/releases/download/v0.8.38/diamond-linux64.tar.gz -O /tmp/build/diamond-linux64.tar.gz \
    && tar -zxvf /tmp/build/diamond-linux64.tar.gz -C /tmp/build/ \
    && cp /tmp/build/diamond /usr/bin/ \
    && wget https://github.com/hyattpd/Prodigal/archive/v2.6.3.tar.gz -O /tmp/build/v2.6.3.tar.gz \
    && tar -zxvf //tmp/build/v2.6.3.tar.gz -C /tmp/build/ \
    && make -C /tmp/build/Prodigal-2.6.3/ \
    && cp /tmp/build/Prodigal-2.6.3/prodigal /usr/bin/ \
    && pip3 install --upgrade pip \
    && pip3 install setuptools==35.0.1 \
    && pip3 install \
        cython==0.25.2 \
        bottle==0.12.9 \
        pysam==0.9.1.4 \
        ete3==3.0.0b35 \
        scikit-learn==0.17.1 \
        django==1.9.7 \
        h5py==2.6.0 \
        cherrypy==8.9.1 \ 
        requests==2.10.0 \
        psutil==5.0.1 \
        mistune==0.7.4 \
    && pip3 install --no-deps anvio==$ANVIO_VERSION \
    && apt-get remove -y \
        binutils \
        build-essential \
        g++ \
        g++-4.8 \
        gcc \
        gcc-4.8 \
        make \
        patch \
    && apt-get -y autoremove \
    && apt-get -y autoclean \
    && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* /root/.cache/*

RUN echo "export PS1=\"\[\e[0m\e[47m\e[1;30m\] :: anvi'o :: \[\e[0m\e[0m \[\e[1;34m\]\]\w\[\e[m\] \[\e[1;32m\]>>>\[\e[m\] \[\e[0m\]\"" >> /root/.bashrc

CMD /bin/bash -l