Paul Harrison pfh
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| remotes::install_github("MonashBioinformaticsPlatform/varistran") | |
| BiocManager::install("recount") | |
| library(recount) | |
| library(tidyverse) | |
| min_samples <- 9 | |
| max_samples <- 12 |
pfh
/ RunVarimax.R
Last active
September 14, 2022 03:50
Apply varimax rotation to PCA dimensionality reduction in a Seurat object to aid interpretability.
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| ## Typical usage | |
| # | |
| # library(Seurat) | |
| # obj <- CreateSeuratObject(mat) | |
| # obj <- NormalizeData(obj) | |
| # obj <- FindVariableFeatures(obj) | |
| # obj <- ScaleData(obj) | |
| # obj <- RunPCA(obj) | |
| # |