Skip to content

Instantly share code, notes, and snippets.

View pgsin's full-sized avatar

Pavel Sinitcyn pgsin

9 followers · 26 following
View GitHub Profile
@pgsin
pgsin / proteinGroups.txt
Created March 11, 2020 17:27
Protein groups from SMC1 interactomics tutorial
This file has been truncated, but you can view the full file.
Protein IDs Majority protein IDs Peptide counts (all) Peptide counts (razor+unique) Peptide counts (unique) Fasta headers Number of proteins Peptides Razor + unique peptides Unique peptides Peptides pHis3_01 Peptides pHis3_02 Peptides pHis3_03 Peptides SMC1_01 Peptides SMC1_02 Peptides SMC1_03 Razor + unique peptides pHis3_01 Razor + unique peptides pHis3_02 Razor + unique peptides pHis3_03 Razor + unique peptides SMC1_01 Razor + unique peptides SMC1_02 Razor + unique peptides SMC1_03 Unique peptides pHis3_01 Unique peptides pHis3_02 Unique peptides pHis3_03 Unique peptides SMC1_01 Unique peptides SMC1_02 Unique peptides SMC1_03 Sequence coverage [%] Unique + razor sequence coverage [%] Unique sequence coverage [%] Mol. weight [kDa] Sequence length Sequence lengths Q-value Score Sequence coverage pHis3_01 [%] Sequence coverage pHis3_02 [%] Sequence coverage pHis3_03 [%] Sequence coverage SMC1_01 [%] Sequence coverage SMC1_02 [%] Sequence coverage SMC1_03 [%] Intensity Intensity pHis3_01 Intensity pHis3_02 Int
@pgsin
pgsin / BinaryTreeNode.cpp
Created May 30, 2020 18:56
#include <bits/stdc++.h>
using namespace std;
struct BinaryTreeNode {
int data;
BinaryTreeNode* left;
BinaryTreeNode* right;
};
@pgsin
pgsin / BinaryTreeNode.cs
Created June 3, 2020 21:15
using System;
using System.Collections.Generic;
namespace ConsoleApp9 {
public class BinaryTreeNode {
public int Data { get; }
public BinaryTreeNode Left { get; }
public BinaryTreeNode Right { get; }
public BinaryTreeNode(int data) {
@pgsin
pgsin / proteinGroups.txt
Created March 30, 2022 02:54
This file has been truncated, but you can view the full file.
Protein IDs Majority protein IDs Peptide counts (all) Peptide counts (razor+unique) Peptide counts (unique) Fasta headers Number of proteins Peptides Razor + unique peptides Unique peptides Peptides pHis3_01 Peptides pHis3_02 Peptides pHis3_03 Peptides SMC1_01 Peptides SMC1_02 Peptides SMC1_03 Razor + unique peptides pHis3_01 Razor + unique peptides pHis3_02 Razor + unique peptides pHis3_03 Razor + unique peptides SMC1_01 Razor + unique peptides SMC1_02 Razor + unique peptides SMC1_03 Unique peptides pHis3_01 Unique peptides pHis3_02 Unique peptides pHis3_03 Unique peptides SMC1_01 Unique peptides SMC1_02 Unique peptides SMC1_03 Sequence coverage [%] Unique + razor sequence coverage [%] Unique sequence coverage [%] Mol. weight [kDa] Sequence length Sequence lengths Q-value Score Sequence coverage pHis3_01 [%] Sequence coverage pHis3_02 [%] Sequence coverage pHis3_03 [%] Sequence coverage SMC1_01 [%] Sequence coverage SMC1_02 [%] Sequence coverage SMC1_03 [%] Intensity Intensity pHis3_01 Intensity pHis3_02 Int
@pgsin
pgsin / main.py
Last active November 28, 2023 19:32
Phosphoproteome on Astral - Figure 1C and 1D
import json
import random
import math
from random import sample
import matplotlib.pyplot as plt
import numpy as np
from matplotlib import cm
from matplotlib.colors import Normalize