| !/backup* | |
| !/dev/disk/ | |
| !/etc/.etckeeper | |
| !/etc/.git/ | |
| !/etc/aide/.aide.conf.swp | |
| !/etc/aide/.aide.conf.swp | |
| !/etc/aide/aide.conf.d/00_local_excludes | |
| !/etc/ld.so.cache | |
| !/etc/lvm/archive | |
| !/etc/lvm/backup |
| /** | |
| * Convert TIFF fields of view to a pyramidal OME-TIFF. | |
| * | |
| * Locations are parsed from the baseline TIFF tags, therefore these need to be set. | |
| * | |
| * One application of this script is to combine spectrally-unmixed images. | |
| * Be sure to read the script and see where default settings could be changed, e.g. | |
| * - Prompting the user to select files (or using the one currently open the viewer) | |
| * - Using lossy or lossless compression | |
| * |
| Scripts that are complex enough not to fit in any of the other simple categories. | |
| TOC | |
| Affine transform objects between images.groovy - used with the Align images experimental tool in v0.2.0m1 | |
| Background staining check - Takes annotations, expands an area around them, checks the staining level in that area, | |
| then deletes all expanded areas and any original areas that violate some condition. Can help check for staining artifacts. | |
| Classifier with GUI.groovy - User interface based macro to simplify classifying many possible channels. Also generates all | |
| possible combinations of base classes (double, triple, etc positives). |
| /** | |
| * Script to export pixels & annotations for whole slide images. | |
| * | |
| * The image can optionally be tiled during export, so that even large images can be exported at high resolution. | |
| * (Note: In this case 'tiled' means as separate, non-overlapping images... not a single, tiled pyramidal image.) | |
| * | |
| * The downsample value and coordinates are encoded in each image file name. | |
| * | |
| * The annotations are exported as 8-bit labelled images. | |
| * These labels depend upon annotation classifications; a text file giving the key is written for reference. |
| $ cat ~/anaconda3/envs/tensorflow_p27/etc/conda/activate.d/activate.sh | |
| #!/bin/sh | |
| export KERAS_BACKEND='tensorflow' | |
| cp ~/.keras/keras_tensorflow.json ~/.keras/keras.json | |
| export LD_LIBRARY_PATH=/usr/local/cuda-9.0/lib64:/usr/local/cuda-9.0/extras/CUPTI/lib64:/lib/nccl/cuda-9:$LD_LIBRARY_PATH_WITHOUT_CUDA |
| Scripts mostly taken from Pete, and also from the forums. For easy access and reference. | |
| TOC | |
| Alignment: Several scripts to assist in alignment as of M9. Store scripts make files using the Affine transformation while | |
| TransferObjects uses the stored file in the Affine folder with the current image name to move objects into it. | |
| The final result is that one set of files can be generated for the transforms, and those transforms can be accessed to move objects | |
| back and forth between the images. | |
| Change annotations into Cell objects.groovy - Converts annotations into PathCellObjects, which allows certian functions to work within |
| import qupath.lib.scripting.QP | |
| import qupath.lib.geom.Point2 | |
| import qupath.lib.roi.PolygonROI | |
| import qupath.lib.objects.PathAnnotationObject | |
| import qupath.lib.images.servers.ImageServer | |
| //Aperio Image Scope displays images in a different orientation | |
| def rotated = true |
| func makeGetCall() { | |
| // Set up the URL request | |
| let todoEndpoint: String = "https://jsonplaceholder.typicode.com/todos/1" | |
| guard let url = URL(string: todoEndpoint) else { | |
| print("Error: cannot create URL") | |
| return | |
| } | |
| let urlRequest = URLRequest(url: url) | |
| // set up the session |
This configuration worked for me, hope it helps
It is based on: https://becominghuman.ai/deep-learning-gaming-build-with-nvidia-titan-xp-and-macbook-pro-with-thunderbolt2-5ceee7167f8b
and on: https://stackoverflow.com/questions/44744737/tensorflow-mac-os-gpu-support
This text is the section about OS X Yosemite (which also works for macOS Sierra) from https://docs.basho.com/riak/kv/2.1.4/using/performance/open-files-limit/#mac-os-x
The last time i visited this link it was dead (403), so I cloned it here from the latest snapshot in Archive.org's Wayback Machine https://web.archive.org/web/20170523131633/https://docs.basho.com/riak/kv/2.1.4/using/performance/open-files-limit/