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pvanheus/snp_msa.fasta

Created October 19, 2019 05:10
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snp_msa.fasta
>MTB_anc foo
CCCCGGGAGCCCGGTAGGCCGTCGGATGCGTCCCGCCCGGCGCGCCGTCCGCCACTCGGT
CGCACGCCCGGCCGGCCCCTAATGTTCGGCCACACCGAGCGGGCGAGAGGGGTGACTCGG
AGTCCCGGAGGCCGCCCCGGCCGAGTGCGTCGCCCACGCCGCGGCTTCCATGTGACATGC
TGGCCGAGCAGACAGAAGACGGGACGATCGCCCTCACGCGCGGGGGACCCGTGTGCAGGT
CCGGGGCCCGCAAGGCGACATGCCAACGGGCTTACACCCAATCTCCGCTGCTGTCCGCCA
ACACACGGTATTCCCCGGCGCGCCAGCCACGGGCTCTGGAGAACACCCATGACGGGGCGC
CCCGGCGCCCCCCCACGGAGAGGTACCGCCGCGGGAGCTCAGGGGGGCAGTTCTGGCCCT
ACGGAGGGCGGCTGTAGCCCGCCCTCTGCCCGAGCGGAGTCTCGGGGGCGGCGGGGACCT
CCGGATGCGTCTCTGAGGAGGTCTCGCGCCGCGTAGTTTGGTCTCAGCGCGACTGCGCCC
GGGCGGAGTACAAGAGGGCGGGAGGGGTCGGGCCCCGCGTCGCGGAGCGGCGGGGCGGTG
CCGGCCGGTTGGGTGGCCGCTGGGGCAGGCTCGCCGGGGGGATCGGGGCAAGACGACTGG
ACGAAACCCGCTACAGGCGCAAGCTGCCCGCCGGCGAGGAGCTCCCACTACGGGGTGTTT
CGGGCCTCGGGGACTGCACGAGGGCCGTGTGGTGGACGAGCAACGCAGGCCCGGCCGGCC
GCGCGC
>ERR550641
TTATAACCATTTAAATAATTAGTAAGGATACTTTATTTACTTTATTCCAGATTGTGTAAC
TATGGAATGCATTCTTTTTGGCCGCTCGAAGGGTTGAGGTATACCCATGAAAGTGTGGAA
AACATTCTGAATTATATTAATTAGTATTGCCGTTAGTCTTCTCTACATTAGCGACTCGAT
GAACTTGAAGCGCGAGTTGACTTGGAGGAAGTAGTGACTAGATAAACTTTATCGATCTGC
ATATAAGGTGGGCCTTAGTGGCTTGCAAAATCCGTCTAAGGCAGTGTACATCTCATGAGG
GTCTGAAACAGTGTTGAAACTTGTCGCTGGAACTGTCCAGTGGCCTTGTCAGTTACATAG
TGAGATATCGTTAATTACGACAAGCTTCTTAACAAGATGTTCAGATAGGACCTGACTTCG
GGACGATTTGATGACGAATCATTTGTCTTTAAGATATCCGTCTATAAAAACTAAAACTTG
TTAAGGACACTGACACCAGAAGTTAAAATTATAGGAGCCAACTGAGCTCTACGCCTATGA
TAATTACGCGTGCACAAATAAACAACCCGAAATATTTTAGTAATAGAGAATACCAGACCA
TTTAAGACCCCATCATATAGCCAAATGGCTCAAATAAACGAGCTAAATTGCCGTGGATGA
CTAGGCGTTATGGAGAAGCGGCCTGATGTATTAAAACTTGATCTTTCTCCGAATACACCC
AAAAATGGCCAACTCCAGGCGATATTACAGCTCCCGTCGAGCCAAACAAGTGACTTGATG
ACAGTT
>ERR550671
TTATAGCCATTTAAATAATTAGTAAGGATACTTTATTTACTTTATTCCAGATTGTGTGAC
TGTGGAATGCATTCTTTCTGGCCGCTCGAAGGGTTGAGGTATACCCATGAAAGTATGGAA
AACATTCTGAATTATATTAATTAGTATTGTCGTTAGTGTTCTCTACATTAGCGACTCGAT
GAACTTGAAGCGCGAGTTGACTTGGAGGAAGTAGTGACTAGATAGACTTTATCGATCTGC
CTATAAGGTAGACCTTAGTGGCTTGCAAAATCCGTCTACAGCAGTGTACATCTCATGAGG
GTCTGAAACATTGTTGAAACTTCTCGCTGGAACTGTCCAGTGGCCTTGTCAGTTACATAG
TGAAATATCGTTAATTACGACAAGCTTCTTAACAAGATGTTCAGATAGGACCTGACTTCG
GGACGATTTGATGACGAATTATTTGTCTTTAAGATGTCGGTCTATAAAAACTAAAAATTG
TTAAGGACACTGACACCAGAAGTTAAAACTATAGGAGCCAACTGAGCTCTACGCCTATGA
TAATTACGCGTGCACAAATAAACAACCCGAAATATTTTAGTAATAGAGAACACCACACCA
TTTAAGACCCCATCATATAGCCAAATGGCTCAAATAAACGAGCTAAATTGCCGTGGATGA
CTAGGCGTTATGGAGAAGCGGCCTGATCTATTAAAACTTAATCTTTCTCCGAATACACCC
AAAAATGGCCAACCCCAGGCGATATTACAGCTCCCGTCGAGCCAAACAAGTGACTTGATG
ACAGTT
>ERR550691
TTATAACCATTTAAATAATTAGTAAGGATACTTTATTTACTTTATTCCAGACTGTGTAAC
TATGGAATGCATTCTTTTTGGCCCCCTTAAGGGTTGAGTTATATCCATAAAAGTGTGGAA
CACATTCTGAATTATATTAATTAGTATTACTATTAGTCTTCTCTACATTCGCGACTCGAT
GAAATTGAAGCGGGAGTTGACTTGGAGGAAGTAGTGACTAGATAAACTTTACCGATCTAC
ATATAAGGTGGGCCTTAGTGGCTTGCAAAATCCGTCTAAAGCAGTCGACATCTCATCAGG
GTCTGAAACCTGGTTGAAAGTTGTCTTTGGAACTGTCCAGTGGTCTTGTCAGTTACATAG
TGAGGTATTGTTAATTACGACAAGCTTCTTAACAAGATGTTCAAATAGGACCTGACTTAG
GGACGATTTAATGACGAATCATTTGTCTTTAAGATATCCGTCTATAAAAACTAAAACTTG
TTAAGGACACTGACACCAGAAGTCAAAATTATAGGAGCCAACTGAGCTCTACGCCTATGA
TAATTACACGTGCACAAATAAACAACCCGAAATATTTTAGTAATAGAGAATACCACACCA
TTTAAGACCCCATCATATAGCCAGATGACTCAAATAAACAAGCTAAATTGCCGTAGAAAA
CTAGGCGTTATGGAGAAGCGGCCTGATGTATTAAAACTTGATCTTTCTCCGAATACACCC
AAAAATGGCCAACTCCAGGCGATATTACAGCTCCCGTCGAGCCAAACAAGTGACTTAATG
ATAGTT
>ERR550703
TTATAACCATTTAAATAATTAGTAAGGATACTTTATTTACTTTATTCCAGATTGTGTAAC
TATGGAATGCATTCTTTTTGGCCGCTTGAAGGGTTGAGGTATATCCATGAAAGTGTGGAA
AACATTCTGAATTATATTAATTAGTATTGCTGTTAGTCTTCTCTACATTAGCGACTCGAT
GAACTTGAAGCGCGAGTTGACTTGGAGGAAGTAGTGACTAGATAGACTTTATCGATCTAC
ATATAAGGTGGGCCTTAGTGGCTTGCAAAATCCGTCTACAGCAGTGTACATCTCATGAGG
GTCTGAAACATTGTTGAAACTTGTCGTTGGAACTGTCCAGTGGCCTTGTCAGTTACATAG
TGAGATATCGTTAATTACGACAAGCTTCTTAACAAGATGTTCAGATAGGACCTGACTTCG
GGACGATTTGATGACGAATCATTTGTCTTTAAGATATCCGTCTATAAAAACTAAAACTTG
TTAAGGATACTGACACCAGAAGTTAAAACTATAGGAGCCAACTGAGCTCTACGCCTATGA
TAATTACGCGTGCACAAATAAACAACCCGAAATATTTTAGTAATAGAGAATACCAGACCA
TTTAAGACCCCATCATATAGCCAAATGGCTCAAATAAACAAGCTAAATTGCCGTGGAAGA
CTAGGCGTTATGGAGAAGCGGCCTGATGTATTAAAACTTGATCTTTCTCCGAATACACCC
AAAAATGGCCAACTCCAGGCGATATTACAGCTCCCGTCGAGCCAAACAAGTGACTTGATG
ACAGTT
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