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Created October 21, 2019 04:59
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DEBUG conda.gateways.logging:set_verbosity(231): verbosity set to 2
DEBUG conda.core.solve:solve_final_state(222): solving prefix /home/pvh/anaconda3/envs/rgi
specs_to_remove: frozenset()
specs_to_add: frozenset({MatchSpec("rgi=5.1.0")})
prune: <auxlib._Null object at 0x7f2630af0a20>
Collecting package metadata (current_repodata.json): ...working... DEBUG conda.core.package_cache_data:_check_writable(259): package cache directory '/home/pvh/anaconda3/pkgs' writable: True
DEBUG conda.core.package_cache_data:_check_writable(259): package cache directory '/home/pvh/anaconda3/pkgs' writable: True
DEBUG conda.core.package_cache_data:_check_writable(259): package cache directory '/home/pvh/anaconda3/pkgs' writable: True
DEBUG conda.core.package_cache_data:_check_writable(259): package cache directory '/home/pvh/anaconda3/pkgs' writable: True
DEBUG conda.core.package_cache_data:_check_writable(259): package cache directory '/home/pvh/anaconda3/pkgs' writable: True
DEBUG conda.core.subdir_data:_load(225): Using cached repodata for https://conda.anaconda.org/bioconda/noarch/current_repodata.json at /home/pvh/anaconda3/pkgs/cache/e599ec5e.json. Timeout in 438 sec
DEBUG conda.core.subdir_data:_load(225): Using cached repodata for https://conda.anaconda.org/conda-forge/noarch/current_repodata.json at /home/pvh/anaconda3/pkgs/cache/62c98390.json. Timeout in 436 sec
DEBUG conda.core.subdir_data:_load(231): Local cache timed out for https://repo.anaconda.com/pkgs/main/noarch/current_repodata.json at /home/pvh/anaconda3/pkgs/cache/b35683e8.json
DEBUG conda.core.subdir_data:_load(225): Using cached repodata for https://conda.anaconda.org/bioconda/linux-64/current_repodata.json at /home/pvh/anaconda3/pkgs/cache/a0b50a38.json. Timeout in 442 sec
DEBUG conda.core.subdir_data:_load(231): Local cache timed out for https://repo.anaconda.com/pkgs/r/linux-64/current_repodata.json at /home/pvh/anaconda3/pkgs/cache/f1f1f480.json
DEBUG conda.core.subdir_data:_load(231): Local cache timed out for https://repo.anaconda.com/pkgs/main/linux-64/current_repodata.json at /home/pvh/anaconda3/pkgs/cache/9e0f62c3.json
DEBUG conda.core.subdir_data:_load(231): Local cache timed out for https://repo.anaconda.com/pkgs/r/noarch/current_repodata.json at /home/pvh/anaconda3/pkgs/cache/227b7582.json
DEBUG urllib3.util.retry:from_int(211): Converted retries value: 3 -> Retry(total=3, connect=None, read=None, redirect=None, status=None)
DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/62c98390.q
DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/e599ec5e.q
DEBUG conda.core.subdir_data:_load(225): Using cached repodata for https://conda.anaconda.org/conda-forge/linux-64/current_repodata.json at /home/pvh/anaconda3/pkgs/cache/18414ddb.json. Timeout in 436 sec
DEBUG urllib3.util.retry:from_int(211): Converted retries value: 3 -> Retry(total=3, connect=None, read=None, redirect=None, status=None)
DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/a0b50a38.q
DEBUG urllib3.util.retry:from_int(211): Converted retries value: 3 -> Retry(total=3, connect=None, read=None, redirect=None, status=None)
DEBUG urllib3.util.retry:from_int(211): Converted retries value: 3 -> Retry(total=3, connect=None, read=None, redirect=None, status=None)
DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/18414ddb.q
DEBUG urllib3.connectionpool:_new_conn(813): Starting new HTTPS connection (1): repo.anaconda.com:443
DEBUG urllib3.connectionpool:_new_conn(813): Starting new HTTPS connection (1): repo.anaconda.com:443
DEBUG urllib3.connectionpool:_new_conn(813): Starting new HTTPS connection (1): repo.anaconda.com:443
DEBUG urllib3.connectionpool:_new_conn(813): Starting new HTTPS connection (1): repo.anaconda.com:443
DEBUG urllib3.connectionpool:_make_request(393): https://repo.anaconda.com:443 "GET /pkgs/main/noarch/current_repodata.json HTTP/1.1" 304 0
DEBUG conda.core.subdir_data:fetch_repodata_remote_request(477):
>>GET /pkgs/main/noarch/current_repodata.json HTTPS
> User-Agent: conda/4.7.11 requests/2.22.0 CPython/3.7.3 Linux/5.0.0-32-generic ubuntu/19.04 glibc/2.29
> Accept: */*
> Accept-Encoding: gzip, deflate, compress, identity
> Connection: keep-alive
> Content-Type: application/json
> If-Modified-Since: Wed, 16 Oct 2019 16:21:40 GMT
> If-None-Match: W/"1c5bb8ec187e8386f2e44a82b15de321"
<<HTTPS 304 Not Modified
< Age: 390495
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< CF-Cache-Status: HIT
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< Date: Mon, 21 Oct 2019 04:58:07 GMT
< ETag: "1c5bb8ec187e8386f2e44a82b15de321"
< Expect-CT: max-age=604800, report-uri="https://report-uri.cloudflare.com/cdn-cgi/beacon/expect-ct"
< Expires: Mon, 21 Oct 2019 04:58:37 GMT
< Last-Modified: Wed, 16 Oct 2019 16:21:40 GMT
< Server: cloudflare
< Set-Cookie: __cfduid=d2d48f1704f20969b8fb4d8a04221b3691571633887; expires=Tue, 20-Oct-20 04:58:07 GMT; path=/; domain=.anaconda.com; HttpOnly; Secure
< Vary: Accept-Encoding
< x-amz-id-2: XQ1l+gZppCk7Ma9zR3ADlP6/9dy+skbuVTF9CL0+OZQtLXlAPihzZXNdEfzDaDzNDwlseIIBwJk=
< x-amz-request-id: 36F771B9BE797D25
< x-amz-version-id: MZoNyWnarmnWll1_FVo_aSLANqbcjlwS
< Connection: keep-alive
< Elapsed: 00:00.206363
DEBUG conda.core.subdir_data:_load(250): 304 NOT MODIFIED for 'https://repo.anaconda.com/pkgs/main/noarch/current_repodata.json'. Updating mtime and loading from disk
DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/b35683e8.q
DEBUG urllib3.connectionpool:_make_request(393): https://repo.anaconda.com:443 "GET /pkgs/r/noarch/current_repodata.json HTTP/1.1" 304 0
DEBUG conda.core.subdir_data:fetch_repodata_remote_request(477):
>>GET /pkgs/r/noarch/current_repodata.json HTTPS
> User-Agent: conda/4.7.11 requests/2.22.0 CPython/3.7.3 Linux/5.0.0-32-generic ubuntu/19.04 glibc/2.29
> Accept: */*
> Accept-Encoding: gzip, deflate, compress, identity
> Connection: keep-alive
> Content-Type: application/json
> If-Modified-Since: Tue, 15 Oct 2019 21:11:56 GMT
> If-None-Match: W/"eac2788f37c5bba81de8169259ef4b19"
<<HTTPS 304 Not Modified
< Age: 459809
< Cache-Control: public, max-age=30
< CF-Cache-Status: HIT
< CF-RAY: 5290a7958d62565b-JNB
< Date: Mon, 21 Oct 2019 04:58:07 GMT
< ETag: "eac2788f37c5bba81de8169259ef4b19"
< Expect-CT: max-age=604800, report-uri="https://report-uri.cloudflare.com/cdn-cgi/beacon/expect-ct"
< Expires: Mon, 21 Oct 2019 04:58:37 GMT
< Last-Modified: Tue, 15 Oct 2019 21:11:56 GMT
< Server: cloudflare
< Set-Cookie: __cfduid=d5f1d52a9a847770a4dc73ecc862448631571633887; expires=Tue, 20-Oct-20 04:58:07 GMT; path=/; domain=.anaconda.com; HttpOnly; Secure
< Vary: Accept-Encoding
< x-amz-id-2: d8V2hI4VPErwlM+bLH5MkDJGZVOhvIjyhxi0OS0YE/waxpSiDaoGZEha3sHeqGR/tU7HllAm0sk=
< x-amz-request-id: ACEB41ADA4E5819D
< x-amz-version-id: ufXMwM9FqCmMWA8cA8Sat.aTsg7D_2m8
< Connection: keep-alive
< Elapsed: 00:00.222090
DEBUG conda.core.subdir_data:_load(250): 304 NOT MODIFIED for 'https://repo.anaconda.com/pkgs/r/noarch/current_repodata.json'. Updating mtime and loading from disk
DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/227b7582.q
DEBUG urllib3.connectionpool:_make_request(393): https://repo.anaconda.com:443 "GET /pkgs/main/linux-64/current_repodata.json HTTP/1.1" 304 0
DEBUG conda.core.subdir_data:fetch_repodata_remote_request(477):
>>GET /pkgs/main/linux-64/current_repodata.json HTTPS
> User-Agent: conda/4.7.11 requests/2.22.0 CPython/3.7.3 Linux/5.0.0-32-generic ubuntu/19.04 glibc/2.29
> Accept: */*
> Accept-Encoding: gzip, deflate, compress, identity
> Connection: keep-alive
> Content-Type: application/json
> If-Modified-Since: Wed, 16 Oct 2019 18:02:39 GMT
> If-None-Match: W/"bbd049b8a2946a4ff6155f855313d6d5"
<<HTTPS 304 Not Modified
< Age: 378796
< Cache-Control: public, max-age=30
< CF-Cache-Status: HIT
< CF-RAY: 5290a79598a2ac70-JNB
< Date: Mon, 21 Oct 2019 04:58:07 GMT
< ETag: "bbd049b8a2946a4ff6155f855313d6d5"
< Expect-CT: max-age=604800, report-uri="https://report-uri.cloudflare.com/cdn-cgi/beacon/expect-ct"
< Expires: Mon, 21 Oct 2019 04:58:37 GMT
< Last-Modified: Wed, 16 Oct 2019 18:02:39 GMT
< Server: cloudflare
< Set-Cookie: __cfduid=d02078500d511613ff6c31706f2a1b8401571633887; expires=Tue, 20-Oct-20 04:58:07 GMT; path=/; domain=.anaconda.com; HttpOnly; Secure
< Vary: Accept-Encoding
< x-amz-id-2: /jLP8awPOJXyWwdZGJEzhb0B/byqqMTxkW3/UA8rbNMI87p9N5ABn8Cxwc/3XGYl9TaYTBvcTzk=
< x-amz-request-id: 03887800D2F59B61
< x-amz-version-id: n6j5dFv94vHlEBY7GTyzXZB8NCfIgPO_
< Connection: keep-alive
< Elapsed: 00:00.235533
DEBUG conda.core.subdir_data:_load(250): 304 NOT MODIFIED for 'https://repo.anaconda.com/pkgs/main/linux-64/current_repodata.json'. Updating mtime and loading from disk
DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/9e0f62c3.q
DEBUG urllib3.connectionpool:_make_request(393): https://repo.anaconda.com:443 "GET /pkgs/r/linux-64/current_repodata.json HTTP/1.1" 304 0
DEBUG conda.core.subdir_data:fetch_repodata_remote_request(477):
>>GET /pkgs/r/linux-64/current_repodata.json HTTPS
> User-Agent: conda/4.7.11 requests/2.22.0 CPython/3.7.3 Linux/5.0.0-32-generic ubuntu/19.04 glibc/2.29
> Accept: */*
> Accept-Encoding: gzip, deflate, compress, identity
> Connection: keep-alive
> Content-Type: application/json
> If-Modified-Since: Tue, 15 Oct 2019 16:29:41 GMT
> If-None-Match: W/"5a82f4b9cd3a0c7780e4e50ce2fadace"
<<HTTPS 304 Not Modified
< Age: 475910
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< CF-Cache-Status: HIT
< CF-RAY: 5290a795af4cac7c-JNB
< Date: Mon, 21 Oct 2019 04:58:07 GMT
< ETag: "5a82f4b9cd3a0c7780e4e50ce2fadace"
< Expect-CT: max-age=604800, report-uri="https://report-uri.cloudflare.com/cdn-cgi/beacon/expect-ct"
< Expires: Mon, 21 Oct 2019 04:58:37 GMT
< Last-Modified: Tue, 15 Oct 2019 16:29:41 GMT
< Server: cloudflare
< Set-Cookie: __cfduid=d4692f64cbf297de6f11c5a2c8b40f6b51571633887; expires=Tue, 20-Oct-20 04:58:07 GMT; path=/; domain=.anaconda.com; HttpOnly; Secure
< Vary: Accept-Encoding
< x-amz-id-2: EFXztE8n3gFta+CJt7aCsQo8TVI0so6UF4puqd/jC7Y9IHsQOCWfmPuEsyXoClCTDlmEMk8Alu4=
< x-amz-request-id: 27347CDE22C711D2
< x-amz-version-id: 51av7vyf.venqKNQMrLpKIE4t875IBOn
< Connection: keep-alive
< Elapsed: 00:00.251477
DEBUG conda.core.subdir_data:_load(250): 304 NOT MODIFIED for 'https://repo.anaconda.com/pkgs/r/linux-64/current_repodata.json'. Updating mtime and loading from disk
DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/f1f1f480.q
done
Solving environment: ...working... DEBUG conda.resolve:get_reduced_index(539): Retrieving packages for:
- rgi=5.1.0
DEBUG conda.resolve:filter_group(600): rgi: pruned from 2 -> 0
DEBUG conda.core.solve:_add_specs(616): specs_map with targets: OrderedDict()
DEBUG conda.resolve:bad_installed(1066): Checking if the current environment is consistent
DEBUG conda.core.solve:_find_inconsistent_packages(483): inconsistent precs: None
DEBUG conda.resolve:_get_sat_solver_cls(52): Using SAT solver interface 'pycosat'.
DEBUG conda.resolve:gen_clauses(878): gen_clauses returning with clause count: 21021
DEBUG conda.resolve:generate_spec_constraints(886): generate_spec_constraints returning with clause count: 21021
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 21022
DEBUG conda.resolve:generate_spec_constraints(886): generate_spec_constraints returning with clause count: 21021
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 21022
DEBUG conda.core.solve:_run_sat(756): conflicting specs:
- rgi=5.1.0
DEBUG conda.core.solve:_run_sat(800): final specs to add:
- rgi=5.1.0
DEBUG conda.resolve:solve(1198): Solving for:
- 0: rgi=5.1.0 target=None optional=False
DEBUG conda.resolve:solve(1208): Solve: Getting reduced index of compliant packages
failed with repodata from current_repodata.json, will retry with next repodata source.
DEBUG conda.core.solve:solve_final_state(222): solving prefix /home/pvh/anaconda3/envs/rgi
specs_to_remove: frozenset()
specs_to_add: frozenset({MatchSpec("rgi=5.1.0")})
prune: <auxlib._Null object at 0x7f2630af0a20>
Collecting package metadata (repodata.json): ...working... DEBUG conda.core.subdir_data:_load(225): Using cached repodata for https://conda.anaconda.org/conda-forge/linux-64/repodata.json at /home/pvh/anaconda3/pkgs/cache/497deca9.json. Timeout in 398 sec
DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/497deca9.q
DEBUG conda.core.subdir_data:_load(225): Using cached repodata for https://conda.anaconda.org/conda-forge/noarch/repodata.json at /home/pvh/anaconda3/pkgs/cache/09cdf8bf.json. Timeout in 390 sec
DEBUG conda.core.subdir_data:_load(225): Using cached repodata for https://conda.anaconda.org/bioconda/linux-64/repodata.json at /home/pvh/anaconda3/pkgs/cache/ffeee55f.json. Timeout in 394 sec
DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/09cdf8bf.q
DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/ffeee55f.q
DEBUG conda.core.subdir_data:_load(231): Local cache timed out for https://repo.anaconda.com/pkgs/main/linux-64/repodata.json at /home/pvh/anaconda3/pkgs/cache/47929eba.json
DEBUG urllib3.util.retry:from_int(211): Converted retries value: 3 -> Retry(total=3, connect=None, read=None, redirect=None, status=None)
DEBUG conda.core.subdir_data:_load(231): Local cache timed out for https://repo.anaconda.com/pkgs/main/noarch/repodata.json at /home/pvh/anaconda3/pkgs/cache/3e39a7aa.json
DEBUG urllib3.util.retry:from_int(211): Converted retries value: 3 -> Retry(total=3, connect=None, read=None, redirect=None, status=None)
DEBUG urllib3.connectionpool:_new_conn(813): Starting new HTTPS connection (1): repo.anaconda.com:443
DEBUG urllib3.connectionpool:_new_conn(813): Starting new HTTPS connection (1): repo.anaconda.com:443
DEBUG conda.core.subdir_data:_load(225): Using cached repodata for https://conda.anaconda.org/bioconda/noarch/repodata.json at /home/pvh/anaconda3/pkgs/cache/2a957770.json. Timeout in 389 sec
DEBUG conda.core.subdir_data:_load(231): Local cache timed out for https://repo.anaconda.com/pkgs/r/linux-64/repodata.json at /home/pvh/anaconda3/pkgs/cache/2ce54b42.json
DEBUG conda.core.subdir_data:_load(231): Local cache timed out for https://repo.anaconda.com/pkgs/r/noarch/repodata.json at /home/pvh/anaconda3/pkgs/cache/4ea078d6.json
DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/2a957770.q
DEBUG urllib3.util.retry:from_int(211): Converted retries value: 3 -> Retry(total=3, connect=None, read=None, redirect=None, status=None)
DEBUG urllib3.util.retry:from_int(211): Converted retries value: 3 -> Retry(total=3, connect=None, read=None, redirect=None, status=None)
DEBUG urllib3.connectionpool:_new_conn(813): Starting new HTTPS connection (1): repo.anaconda.com:443
DEBUG urllib3.connectionpool:_new_conn(813): Starting new HTTPS connection (1): repo.anaconda.com:443
DEBUG urllib3.connectionpool:_make_request(393): https://repo.anaconda.com:443 "GET /pkgs/main/noarch/repodata.json HTTP/1.1" 304 0
DEBUG conda.core.subdir_data:fetch_repodata_remote_request(477):
>>GET /pkgs/main/noarch/repodata.json HTTPS
> User-Agent: conda/4.7.11 requests/2.22.0 CPython/3.7.3 Linux/5.0.0-32-generic ubuntu/19.04 glibc/2.29
> Accept: */*
> Accept-Encoding: gzip, deflate, compress, identity
> Connection: keep-alive
> Content-Type: application/json
> If-Modified-Since: Wed, 16 Oct 2019 16:21:41 GMT
> If-None-Match: W/"bc4ebb09d887ffdc994056a8b81916e7"
<<HTTPS 304 Not Modified
< Age: 390493
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< CF-Cache-Status: HIT
< CF-RAY: 5290a7a34e3bac7c-JNB
< Date: Mon, 21 Oct 2019 04:58:09 GMT
< ETag: "bc4ebb09d887ffdc994056a8b81916e7"
< Expect-CT: max-age=604800, report-uri="https://report-uri.cloudflare.com/cdn-cgi/beacon/expect-ct"
< Expires: Mon, 21 Oct 2019 04:58:39 GMT
< Last-Modified: Wed, 16 Oct 2019 16:21:41 GMT
< Server: cloudflare
< Set-Cookie: __cfduid=dae107bb39830b63ecdc6c3c9ee288bd91571633889; expires=Tue, 20-Oct-20 04:58:09 GMT; path=/; domain=.anaconda.com; HttpOnly; Secure
< Vary: Accept-Encoding
< x-amz-id-2: Dcynn7C6y68arKG24p0Y+ZLskcs6RMIUYHLEnlc2/JuW037hOL6T+b7mxNwwis+rQQAeTjc5Ths=
< x-amz-request-id: 21F5A81AF8C80E54
< x-amz-version-id: eWNem2BwvzlzYgtMBbzbe0ObNmdRezaF
< Connection: keep-alive
< Elapsed: 00:01.079377
DEBUG conda.core.subdir_data:_load(250): 304 NOT MODIFIED for 'https://repo.anaconda.com/pkgs/main/noarch/repodata.json'. Updating mtime and loading from disk
DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/3e39a7aa.q
DEBUG urllib3.connectionpool:_make_request(393): https://repo.anaconda.com:443 "GET /pkgs/main/linux-64/repodata.json HTTP/1.1" 304 0
DEBUG conda.core.subdir_data:fetch_repodata_remote_request(477):
>>GET /pkgs/main/linux-64/repodata.json HTTPS
> User-Agent: conda/4.7.11 requests/2.22.0 CPython/3.7.3 Linux/5.0.0-32-generic ubuntu/19.04 glibc/2.29
> Accept: */*
> Accept-Encoding: gzip, deflate, compress, identity
> Connection: keep-alive
> Content-Type: application/json
> If-Modified-Since: Wed, 16 Oct 2019 18:03:04 GMT
> If-None-Match: W/"706651b839e21462041d61f4f2a022b1-3"
<<HTTPS 304 Not Modified
< Age: 381611
< Cache-Control: public, max-age=30
< CF-Cache-Status: HIT
< CF-RAY: 5290a7a3be88ac7c-JNB
< Date: Mon, 21 Oct 2019 04:58:09 GMT
< ETag: "706651b839e21462041d61f4f2a022b1-3"
< Expect-CT: max-age=604800, report-uri="https://report-uri.cloudflare.com/cdn-cgi/beacon/expect-ct"
< Expires: Mon, 21 Oct 2019 04:58:39 GMT
< Last-Modified: Wed, 16 Oct 2019 18:03:04 GMT
< Server: cloudflare
< Set-Cookie: __cfduid=dae107bb39830b63ecdc6c3c9ee288bd91571633889; expires=Tue, 20-Oct-20 04:58:09 GMT; path=/; domain=.anaconda.com; HttpOnly; Secure
< Vary: Accept-Encoding
< x-amz-id-2: +D7x7mg+UOsoUaLdhIklZw+izT+dE5+Zl9jPxo16m2uqbjM4jn3QwsGAWH8P9rmBDcPu/BNf4ys=
< x-amz-request-id: 46B95D74AA6B3210
< x-amz-version-id: egOpSY9DJAYZiMNklEKcd0P3OPtsrhCN
< Connection: keep-alive
< Elapsed: 00:01.148625
DEBUG conda.core.subdir_data:_load(250): 304 NOT MODIFIED for 'https://repo.anaconda.com/pkgs/main/linux-64/repodata.json'. Updating mtime and loading from disk
DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/47929eba.q
DEBUG urllib3.connectionpool:_make_request(393): https://repo.anaconda.com:443 "GET /pkgs/r/linux-64/repodata.json HTTP/1.1" 304 0
DEBUG conda.core.subdir_data:fetch_repodata_remote_request(477):
>>GET /pkgs/r/linux-64/repodata.json HTTPS
> User-Agent: conda/4.7.11 requests/2.22.0 CPython/3.7.3 Linux/5.0.0-32-generic ubuntu/19.04 glibc/2.29
> Accept: */*
> Accept-Encoding: gzip, deflate, compress, identity
> Connection: keep-alive
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DEBUG conda.core.subdir_data:_load(250): 304 NOT MODIFIED for 'https://repo.anaconda.com/pkgs/r/linux-64/repodata.json'. Updating mtime and loading from disk
DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/2ce54b42.q
DEBUG urllib3.connectionpool:_make_request(393): https://repo.anaconda.com:443 "GET /pkgs/r/noarch/repodata.json HTTP/1.1" 304 0
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DEBUG conda.core.subdir_data:_load(250): 304 NOT MODIFIED for 'https://repo.anaconda.com/pkgs/r/noarch/repodata.json'. Updating mtime and loading from disk
DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/4ea078d6.q
done
Solving environment: ...working... DEBUG conda.resolve:get_reduced_index(539): Retrieving packages for:
- rgi=5.1.0
DEBUG conda.resolve:filter_group(600): rgi: pruned from 26 -> 1
DEBUG conda.resolve:filter_group(600): bamtools: pruned from 13 -> 4
DEBUG conda.resolve:filter_group(600): zlib: pruned from 14 -> 11
DEBUG conda.resolve:filter_group(600): bedtools: pruned from 39 -> 3
DEBUG conda.resolve:filter_group(600): libgcc-ng: pruned from 8 -> 4
DEBUG conda.resolve:filter_group(600): libstdcxx-ng: pruned from 8 -> 4
DEBUG conda.resolve:filter_group(600): xz: pruned from 10 -> 4
DEBUG conda.resolve:filter_group(600): biopython: pruned from 84 -> 13
DEBUG conda.resolve:filter_group(600): python: pruned from 188 -> 175
DEBUG conda.resolve:filter_group(600): readline: pruned from 12 -> 10
DEBUG conda.resolve:filter_group(600): sqlite: pruned from 46 -> 39
DEBUG conda.resolve:filter_group(600): python: pruned from 175 -> 164
DEBUG conda.resolve:filter_group(600): pip: pruned from 106 -> 103
DEBUG conda.resolve:filter_group(600): setuptools: pruned from 287 -> 252
DEBUG conda.resolve:filter_group(600): wheel: pruned from 89 -> 88
DEBUG conda.resolve:filter_group(600): blast: pruned from 20 -> 4
DEBUG conda.resolve:filter_group(600): boost: pruned from 119 -> 36
DEBUG conda.resolve:filter_group(600): python: pruned from 164 -> 138
DEBUG conda.resolve:filter_group(600): pip: pruned from 103 -> 80
DEBUG conda.resolve:filter_group(600): setuptools: pruned from 252 -> 219
DEBUG conda.resolve:filter_group(600): wheel: pruned from 88 -> 67
DEBUG conda.resolve:filter_group(600): bowtie2: pruned from 93 -> 7
DEBUG conda.resolve:filter_group(600): bwa: pruned from 33 -> 5
DEBUG conda.resolve:filter_group(600): diamond: pruned from 53 -> 4
DEBUG conda.resolve:filter_group(600): matplotlib: pruned from 89 -> 39
DEBUG conda.resolve:filter_group(600): pyqt: pruned from 84 -> 67
DEBUG conda.resolve:filter_group(600): qt: pruned from 20 -> 19
DEBUG conda.resolve:filter_group(600): fontconfig: pruned from 28 -> 24
DEBUG conda.resolve:filter_group(600): libpng: pruned from 24 -> 23
DEBUG conda.resolve:filter_group(600): libpng: pruned from 23 -> 21
DEBUG conda.resolve:filter_group(600): libxml2: pruned from 29 -> 26
DEBUG conda.resolve:filter_group(600): freetype: pruned from 23 -> 19
DEBUG conda.resolve:filter_group(600): icu: pruned from 16 -> 9
DEBUG conda.resolve:filter_group(600): libpng: pruned from 21 -> 16
DEBUG conda.resolve:filter_group(600): sqlite: pruned from 39 -> 37
DEBUG conda.resolve:filter_group(600): python: pruned from 138 -> 110
DEBUG conda.resolve:filter_group(600): readline: pruned from 10 -> 9
DEBUG conda.resolve:filter_group(600): tk: pruned from 22 -> 19
DEBUG conda.resolve:filter_group(600): mock: pruned from 35 -> 20
DEBUG conda.resolve:filter_group(600): six: pruned from 30 -> 23
DEBUG conda.resolve:filter_group(600): pandas: pruned from 193 -> 159
DEBUG conda.resolve:filter_group(600): numpy: pruned from 628 -> 480
DEBUG conda.resolve:filter_group(600): python-dateutil: pruned from 39 -> 33
DEBUG conda.resolve:filter_group(600): pytz: pruned from 61 -> 53
DEBUG conda.resolve:filter_group(600): prodigal: pruned from 5 -> 2
DEBUG conda.resolve:filter_group(600): pyahocorasick: pruned from 19 -> 12
DEBUG conda.resolve:filter_group(600): pyfaidx: pruned from 29 -> 3
DEBUG conda.resolve:filter_group(600): pytest: pruned from 347 -> 272
DEBUG conda.resolve:filter_group(600): py: pruned from 45 -> 39
DEBUG conda.resolve:filter_group(600): python: pruned from 110 -> 42
DEBUG conda.resolve:filter_group(600): pip: pruned from 80 -> 32
DEBUG conda.resolve:filter_group(600): setuptools: pruned from 219 -> 59
DEBUG conda.resolve:filter_group(600): certifi: pruned from 112 -> 29
DEBUG conda.resolve:filter_group(600): wheel: pruned from 67 -> 28
DEBUG conda.resolve:filter_group(600): samtools: pruned from 66 -> 13
DEBUG conda.resolve:filter_group(600): ncurses: pruned from 20 -> 18
DEBUG conda.resolve:filter_group(600): seaborn: pruned from 26 -> 7
DEBUG conda.resolve:filter_group(600): numpy: pruned from 480 -> 182
DEBUG conda.resolve:filter_group(600): python: pruned from 42 -> 33
DEBUG conda.resolve:filter_group(600): readline: pruned from 9 -> 8
DEBUG conda.resolve:filter_group(600): pandas: pruned from 159 -> 50
DEBUG conda.resolve:filter_group(600): numpy: pruned from 182 -> 180
DEBUG conda.resolve:filter_group(600): python-dateutil: pruned from 33 -> 15
DEBUG conda.resolve:filter_group(600): six: pruned from 23 -> 8
DEBUG conda.resolve:filter_group(600): pytz: pruned from 53 -> 25
DEBUG conda.resolve:filter_group(600): scipy: pruned from 219 -> 53
DEBUG conda.resolve:filter_group(600): statsmodels: pruned from 40 -> 12
DEBUG conda.resolve:filter_group(600): patsy: pruned from 19 -> 7
DEBUG conda.resolve:filter_group(600): biopython: pruned from 13 -> 4
DEBUG conda.resolve:filter_group(600): boost: pruned from 36 -> 10
DEBUG conda.resolve:filter_group(600): boost-cpp: pruned from 24 -> 2
DEBUG conda.resolve:filter_group(600): icu: pruned from 9 -> 7
DEBUG conda.resolve:filter_group(600): bowtie2: pruned from 7 -> 3
DEBUG conda.resolve:filter_group(600): matplotlib: pruned from 39 -> 23
DEBUG conda.resolve:filter_group(600): pyqt: pruned from 67 -> 24
DEBUG conda.resolve:filter_group(600): qt: pruned from 19 -> 17
DEBUG conda.resolve:filter_group(600): fontconfig: pruned from 24 -> 19
DEBUG conda.resolve:filter_group(600): freetype: pruned from 19 -> 18
DEBUG conda.resolve:filter_group(600): libxml2: pruned from 26 -> 20
DEBUG conda.resolve:filter_group(600): mock: pruned from 20 -> 9
DEBUG conda.resolve:filter_group(600): pyahocorasick: pruned from 12 -> 5
DEBUG conda.resolve:filter_group(600): pytest: pruned from 272 -> 113
DEBUG conda.resolve:filter_group(600): py: pruned from 39 -> 19
DEBUG conda.core.solve:_add_specs(616): specs_map with targets: OrderedDict()
DEBUG conda.resolve:bad_installed(1066): Checking if the current environment is consistent
DEBUG conda.core.solve:_find_inconsistent_packages(483): inconsistent precs: None
DEBUG conda.resolve:gen_clauses(878): gen_clauses returning with clause count: 82094
DEBUG conda.resolve:generate_spec_constraints(886): generate_spec_constraints returning with clause count: 82094
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 82095
DEBUG conda.core.solve:_run_sat(800): final specs to add:
- rgi=5.1.0
DEBUG conda.resolve:solve(1198): Solving for:
- 0: rgi=5.1.0 target=None optional=False
DEBUG conda.resolve:solve(1208): Solve: Getting reduced index of compliant packages
DEBUG conda.resolve:solve(1235): Solve: determining satisfiability
DEBUG conda.resolve:gen_clauses(878): gen_clauses returning with clause count: 25974
DEBUG conda.resolve:generate_spec_constraints(886): generate_spec_constraints returning with clause count: 25974
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 25975
DEBUG conda.resolve:solve(1286): Requested specs:
- rgi=5.1.0
DEBUG conda.resolve:solve(1287): Optional specs:
DEBUG conda.resolve:solve(1288): All other specs:
- _libgcc_mutex
- atk
- atomicwrites
- attrs
- bamtools
- bedtools
- biopython
- blas
- blast
- blis
- boost
- boost-cpp
- bowtie2
- bwa
- bzip2
- ca-certificates
- cairo
- certifi
- cloog
- coverage
- curl
- cycler
- dbus
- diamond
- expat
- filetype
- fontconfig
- freetype
- fribidi
- funcsigs
- gdk-pixbuf
- gettext
- glib
- gmp
- gobject-introspection
- graphite2
- gst-plugins-base
- gstreamer
- gtk2
- harfbuzz
- htslib
- hypothesis
- icu
- importlib_metadata
- intel-openmp
- isl
- jpeg
- kiwisolver
- krb5
- libblas
- libcblas
- libcurl
- libdeflate
- libedit
- libffi
- libgcc
- libgcc-ng
- libgfortran
- libgfortran-ng
- libiconv
- liblapack
- liblapacke
- libopenblas
- libpng
- libssh2
- libstdcxx-ng
- libtiff
- libuuid
- libxcb
- libxml2
- lz4
- lz4-c
- matplotlib
- matplotlib-base
- mkl
- mkl-service
- mkl_fft
- mkl_random
- mock
- more-itertools
- mpc
- mpfr
- ncurses
- nomkl
- numpy
- numpy-base
- openblas
- openblas-devel
- openssl
- packaging
- pandas
- pango
- patsy
- pbr
- pcre
- perl
- pip
- pixman
- pkg-config
- pluggy
- prodigal
- pthread-stubs
- py
- pyahocorasick
- pyfaidx
- pympler
- pyparsing
- pyqt
- pytest
- python
- python-dateutil
- pytz
- qt
- readline
- samtools
- scipy
- seaborn
- setuptools
- sip
- six
- sqlite
- statsmodels
- tbb
- tk
- tornado
- wcwidth
- wheel
- xorg-kbproto
- xorg-libice
- xorg-libpthread-stubs
- xorg-libsm
- xorg-libx11
- xorg-libxau
- xorg-libxcb
- xorg-libxdmcp
- xorg-libxext
- xorg-libxrender
- xorg-libxt
- xorg-renderproto
- xorg-xextproto
- xorg-xproto
- xz
- zipp
- zlib
- zope
- zope.interface
- zstd
DEBUG conda.resolve:solve(1289): missing specs:
- _libgcc_mutex
- atk
- atomicwrites
- attrs
- bamtools
- bedtools
- biopython
- blas
- blast
- blis
- boost
- boost-cpp
- bowtie2
- bwa
- bzip2
- ca-certificates
- cairo
- certifi
- cloog
- coverage
- curl
- cycler
- dbus
- diamond
- expat
- filetype
- fontconfig
- freetype
- fribidi
- funcsigs
- gdk-pixbuf
- gettext
- glib
- gmp
- gobject-introspection
- graphite2
- gst-plugins-base
- gstreamer
- gtk2
- harfbuzz
- htslib
- hypothesis
- icu
- importlib_metadata
- intel-openmp
- isl
- jpeg
- kiwisolver
- krb5
- libblas
- libcblas
- libcurl
- libdeflate
- libedit
- libffi
- libgcc
- libgcc-ng
- libgfortran
- libgfortran-ng
- libiconv
- liblapack
- liblapacke
- libopenblas
- libpng
- libssh2
- libstdcxx-ng
- libtiff
- libuuid
- libxcb
- libxml2
- lz4
- lz4-c
- matplotlib
- matplotlib-base
- mkl
- mkl-service
- mkl_fft
- mkl_random
- mock
- more-itertools
- mpc
- mpfr
- ncurses
- nomkl
- numpy
- numpy-base
- openblas
- openblas-devel
- openssl
- packaging
- pandas
- pango
- patsy
- pbr
- pcre
- perl
- pip
- pixman
- pkg-config
- pluggy
- prodigal
- pthread-stubs
- py
- pyahocorasick
- pyfaidx
- pympler
- pyparsing
- pyqt
- pytest
- python
- python-dateutil
- pytz
- qt
- readline
- samtools
- scipy
- seaborn
- setuptools
- sip
- six
- sqlite
- statsmodels
- tbb
- tk
- tornado
- wcwidth
- wheel
- xorg-kbproto
- xorg-libice
- xorg-libpthread-stubs
- xorg-libsm
- xorg-libx11
- xorg-libxau
- xorg-libxcb
- xorg-libxdmcp
- xorg-libxext
- xorg-libxrender
- xorg-libxt
- xorg-renderproto
- xorg-xextproto
- xorg-xproto
- xz
- zipp
- zlib
- zope
- zope.interface
- zstd
DEBUG conda.resolve:solve(1292): Solve: minimize removed packages
DEBUG conda.resolve:solve(1299): Solve: maximize versions of requested packages
DEBUG conda.common.logic:minimize(794): Empty objective, trivial solution
DEBUG conda.common.logic:minimize(794): Empty objective, trivial solution
DEBUG conda.resolve:solve(1303): Initial package channel/version metric: 0/0
DEBUG conda.resolve:solve(1306): Solve: minimize track_feature count
DEBUG conda.resolve:generate_feature_count(894): generate_feature_count returning with clause count: 26061
DEBUG conda.common.logic:minimize(788): Clauses added, recomputing solution
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 26061
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 26066
DEBUG conda.common.logic:minimize(874): Final sum objective: 0
DEBUG conda.resolve:solve(1309): Track feature count: 0
DEBUG conda.common.logic:minimize(788): Clauses added, recomputing solution
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 27158
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 27522
DEBUG conda.common.logic:minimize(874): Final sum objective: 0
DEBUG conda.resolve:solve(1320): Package misfeature count: 0
DEBUG conda.resolve:solve(1323): Solve: maximize build numbers of requested packages
DEBUG conda.common.logic:minimize(794): Empty objective, trivial solution
DEBUG conda.resolve:solve(1325): Initial package build metric: 0
DEBUG conda.resolve:solve(1328): Solve: prefer arch over noarch for requested packages
DEBUG conda.common.logic:minimize(794): Empty objective, trivial solution
DEBUG conda.resolve:solve(1330): Noarch metric: 0
DEBUG conda.resolve:solve(1334): Solve: minimize number of optional installations
DEBUG conda.common.logic:minimize(794): Empty objective, trivial solution
DEBUG conda.resolve:solve(1337): Optional package install metric: 0
DEBUG conda.resolve:solve(1340): Solve: minimize number of necessary upgrades
DEBUG conda.common.logic:minimize(794): Empty objective, trivial solution
DEBUG conda.resolve:solve(1343): Dependency update count: 0
DEBUG conda.resolve:solve(1346): Solve: maximize versions and builds of indirect dependencies. Prefer arch over noarch where equivalent.
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 28256
DEBUG conda.common.logic:minimize(874): Final sum objective: 0
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 30289
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 28520
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 28693
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 29002
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 29327
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 29642
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 29871
DEBUG conda.common.logic:minimize(874): Final peak objective: 1
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 84952
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 60184
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 46504
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 39340
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 35677
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 33205
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 31959
DEBUG conda.common.logic:minimize(874): Final sum objective: 1
DEBUG conda.common.logic:minimize(886): New peak objective: 1
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 32934
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 32116
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 32309
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 32185
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 32116
DEBUG conda.common.logic:minimize(874): Final peak objective: 4
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 215811
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 129831
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 85926
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 63393
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 52107
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 45338
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 43103
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 41233
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 43096
DEBUG conda.common.logic:minimize(874): Final sum objective: 5
DEBUG conda.common.logic:minimize(886): New peak objective: 4
DEBUG conda.common.logic:minimize(794): Empty objective, trivial solution
DEBUG conda.resolve:solve(1354): Additional package channel/version/build/noarch metrics: 0/1/5/0
DEBUG conda.resolve:solve(1357): Solve: prune unnecessary packages
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 57551
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 57453
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 62977
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 61573
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 59935
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 58873
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 58354
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 58206
DEBUG conda.common.logic:minimize(874): Final sum objective: 95
DEBUG conda.common.logic:minimize(886): New peak objective: 1
DEBUG conda.resolve:solve(1360): Weak dependency count: 95
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 58207
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 58473
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 58266
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 58220
DEBUG conda.common.logic:minimize(874): Final peak objective: 2
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 62808
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 61462
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 62070
DEBUG conda.common.logic:minimize(874): Final sum objective: 5
DEBUG conda.common.logic:minimize(886): New peak objective: 2
DEBUG conda.resolve:solve(1366): Timestamp metric: 5
DEBUG conda.resolve:solve(1368): Looking for alternate solutions
DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 62071
done
DEBUG conda.core.solve:solve_final_state(308): solved prefix /home/pvh/anaconda3/envs/rgi
solved_linked_dists:
defaults::_libgcc_mutex-0.1-main
conda-forge::ca-certificates-2019.9.11-hecc5488_0
conda-forge::libgfortran-ng-7.3.0-hdf63c60_2
defaults::libstdcxx-ng-9.1.0-hdf63c60_0
bioconda::prodigal-2.6.3-1
defaults::libgcc-ng-9.1.0-hdf63c60_0
conda-forge::bzip2-1.0.8-h516909a_1
conda-forge::expat-2.2.5-he1b5a44_1004
conda-forge::icu-58.2-hf484d3e_1000
conda-forge::jpeg-9c-h14c3975_1001
conda-forge::libdeflate-1.3-h516909a_0
conda-forge::libffi-3.2.1-he1b5a44_1006
conda-forge::libgcc-7.2.0-h69d50b8_2
conda-forge::libiconv-1.15-h516909a_1005
conda-forge::libopenblas-0.3.7-h6e990d7_2
conda-forge::libuuid-2.32.1-h14c3975_1000
conda-forge::ncurses-6.1-hf484d3e_1002
conda-forge::openssl-1.1.1c-h516909a_0
conda-forge::pcre-8.43-he1b5a44_0
conda-forge::perl-5.26.2-h516909a_1006
conda-forge::pthread-stubs-0.4-h14c3975_1001
conda-forge::tbb-2019.9-hc9558a2_0
conda-forge::xorg-libxau-1.0.9-h14c3975_0
conda-forge::xorg-libxdmcp-1.1.3-h516909a_0
conda-forge::xz-5.2.4-h14c3975_1001
conda-forge::zlib-1.2.11-h516909a_1006
bioconda::bamtools-2.5.1-he860b03_5
bioconda::bedtools-2.29.0-h6ed99ea_1
conda-forge::boost-cpp-1.64.0-1
bioconda::bwa-0.7.17-hed695b0_6
bioconda::diamond-0.8.36-hdbcaa40_3
conda-forge::gettext-0.19.8.1-hc5be6a0_1002
conda-forge::libblas-3.8.0-14_openblas
conda-forge::libedit-3.1.20170329-hf8c457e_1001
conda-forge::libpng-1.6.37-hed695b0_0
conda-forge::libssh2-1.8.2-h22169c7_2
conda-forge::libxcb-1.13-h14c3975_1002
conda-forge::libxml2-2.9.9-h13577e0_2
conda-forge::readline-8.0-hf8c457e_0
conda-forge::tk-8.6.9-hed695b0_1003
conda-forge::freetype-2.10.0-he983fc9_1
conda-forge::glib-2.58.3-h6f030ca_1002
conda-forge::krb5-1.16.3-h05b26f9_1001
conda-forge::libcblas-3.8.0-14_openblas
conda-forge::liblapack-3.8.0-14_openblas
conda-forge::sqlite-3.30.1-hcee41ef_0
conda-forge::dbus-1.13.6-he372182_0
conda-forge::fontconfig-2.13.1-he4413a7_1000
conda-forge::gstreamer-1.14.5-h36ae1b5_0
conda-forge::libcurl-7.65.3-hda55be3_0
conda-forge::python-3.6.7-h357f687_1005
conda-forge::atomicwrites-1.3.0-py_0
conda-forge::attrs-19.3.0-py_0
bioconda::bowtie2-2.3.5-py36he860b03_0
conda-forge::certifi-2019.9.11-py36_0
conda-forge::curl-7.65.3-hf8cf82a_0
conda-forge::filetype-1.0.5-py_0
conda-forge::gst-plugins-base-1.14.5-h0935bb2_0
conda-forge::kiwisolver-1.1.0-py36hc9558a2_0
conda-forge::more-itertools-7.2.0-py_0
conda-forge::numpy-1.17.2-py36h95a1406_0
conda-forge::py-1.8.0-py_0
conda-forge::pyahocorasick-1.4.0-py36h14c3975_0
conda-forge::pyparsing-2.4.2-py_0
conda-forge::pytz-2019.3-py_0
conda-forge::sip-4.19.8-py36hf484d3e_1000
conda-forge::six-1.12.0-py36_1000
conda-forge::tornado-6.0.3-py36h516909a_0
conda-forge::wcwidth-0.1.7-py_1
conda-forge::biopython-1.72-py36h14c3975_1000
conda-forge::boost-1.64.0-py36_4
conda-forge::cycler-0.10.0-py_1
bioconda::htslib-1.9-h4da6232_3
conda-forge::mock-3.0.5-py36_0
conda-forge::packaging-19.2-py_0
bioconda::pyfaidx-0.5.5.2-py_1
conda-forge::python-dateutil-2.8.0-py_0
conda-forge::qt-5.9.7-h52cfd70_2
conda-forge::scipy-1.3.1-py36h921218d_2
conda-forge::setuptools-41.4.0-py36_0
conda-forge::zipp-0.6.0-py_0
bioconda::blast-2.6.0-boost1.64_2
conda-forge::importlib_metadata-0.23-py36_0
conda-forge::matplotlib-base-3.1.1-py36hfd891ef_0
conda-forge::pandas-0.25.2-py36hb3f55d8_0
conda-forge::patsy-0.5.1-py_0
conda-forge::pyqt-5.9.2-py36hcca6a23_4
bioconda::samtools-1.9-h10a08f8_12
conda-forge::wheel-0.33.6-py36_0
conda-forge::matplotlib-3.1.1-py36_0
conda-forge::pip-19.3.1-py36_0
conda-forge::pluggy-0.12.0-py_0
conda-forge::statsmodels-0.10.1-py36hc1659b7_0
conda-forge::pytest-5.2.1-py36_0
conda-forge::seaborn-0.9.0-py_1
bioconda::rgi-5.1.0-py36hed695b0_0
==> WARNING: A newer version of conda exists. <==
current version: 4.7.11
latest version: 4.7.12
Please update conda by running
$ conda update -n base conda
INFO conda.core.link:__init__(169): initializing UnlinkLinkTransaction with
target_prefix: /home/pvh/anaconda3/envs/rgi
unlink_precs:
link_precs:
defaults::_libgcc_mutex-0.1-main
conda-forge::ca-certificates-2019.9.11-hecc5488_0
conda-forge::libgfortran-ng-7.3.0-hdf63c60_2
defaults::libstdcxx-ng-9.1.0-hdf63c60_0
bioconda::prodigal-2.6.3-1
defaults::libgcc-ng-9.1.0-hdf63c60_0
conda-forge::bzip2-1.0.8-h516909a_1
conda-forge::expat-2.2.5-he1b5a44_1004
conda-forge::icu-58.2-hf484d3e_1000
conda-forge::jpeg-9c-h14c3975_1001
conda-forge::libdeflate-1.3-h516909a_0
conda-forge::libffi-3.2.1-he1b5a44_1006
conda-forge::libgcc-7.2.0-h69d50b8_2
conda-forge::libiconv-1.15-h516909a_1005
conda-forge::libopenblas-0.3.7-h6e990d7_2
conda-forge::libuuid-2.32.1-h14c3975_1000
conda-forge::ncurses-6.1-hf484d3e_1002
conda-forge::openssl-1.1.1c-h516909a_0
conda-forge::pcre-8.43-he1b5a44_0
conda-forge::perl-5.26.2-h516909a_1006
conda-forge::pthread-stubs-0.4-h14c3975_1001
conda-forge::tbb-2019.9-hc9558a2_0
conda-forge::xorg-libxau-1.0.9-h14c3975_0
conda-forge::xorg-libxdmcp-1.1.3-h516909a_0
conda-forge::xz-5.2.4-h14c3975_1001
conda-forge::zlib-1.2.11-h516909a_1006
bioconda::bamtools-2.5.1-he860b03_5
bioconda::bedtools-2.29.0-h6ed99ea_1
conda-forge::boost-cpp-1.64.0-1
bioconda::bwa-0.7.17-hed695b0_6
bioconda::diamond-0.8.36-hdbcaa40_3
conda-forge::gettext-0.19.8.1-hc5be6a0_1002
conda-forge::libblas-3.8.0-14_openblas
conda-forge::libedit-3.1.20170329-hf8c457e_1001
conda-forge::libpng-1.6.37-hed695b0_0
conda-forge::libssh2-1.8.2-h22169c7_2
conda-forge::libxcb-1.13-h14c3975_1002
conda-forge::libxml2-2.9.9-h13577e0_2
conda-forge::readline-8.0-hf8c457e_0
conda-forge::tk-8.6.9-hed695b0_1003
conda-forge::freetype-2.10.0-he983fc9_1
conda-forge::glib-2.58.3-h6f030ca_1002
conda-forge::krb5-1.16.3-h05b26f9_1001
conda-forge::libcblas-3.8.0-14_openblas
conda-forge::liblapack-3.8.0-14_openblas
conda-forge::sqlite-3.30.1-hcee41ef_0
conda-forge::dbus-1.13.6-he372182_0
conda-forge::fontconfig-2.13.1-he4413a7_1000
conda-forge::gstreamer-1.14.5-h36ae1b5_0
conda-forge::libcurl-7.65.3-hda55be3_0
conda-forge::python-3.6.7-h357f687_1005
conda-forge::atomicwrites-1.3.0-py_0
conda-forge::attrs-19.3.0-py_0
bioconda::bowtie2-2.3.5-py36he860b03_0
conda-forge::certifi-2019.9.11-py36_0
conda-forge::curl-7.65.3-hf8cf82a_0
conda-forge::filetype-1.0.5-py_0
conda-forge::gst-plugins-base-1.14.5-h0935bb2_0
conda-forge::kiwisolver-1.1.0-py36hc9558a2_0
conda-forge::more-itertools-7.2.0-py_0
conda-forge::numpy-1.17.2-py36h95a1406_0
conda-forge::py-1.8.0-py_0
conda-forge::pyahocorasick-1.4.0-py36h14c3975_0
conda-forge::pyparsing-2.4.2-py_0
conda-forge::pytz-2019.3-py_0
conda-forge::sip-4.19.8-py36hf484d3e_1000
conda-forge::six-1.12.0-py36_1000
conda-forge::tornado-6.0.3-py36h516909a_0
conda-forge::wcwidth-0.1.7-py_1
conda-forge::biopython-1.72-py36h14c3975_1000
conda-forge::boost-1.64.0-py36_4
conda-forge::cycler-0.10.0-py_1
bioconda::htslib-1.9-h4da6232_3
conda-forge::mock-3.0.5-py36_0
conda-forge::packaging-19.2-py_0
bioconda::pyfaidx-0.5.5.2-py_1
conda-forge::python-dateutil-2.8.0-py_0
conda-forge::qt-5.9.7-h52cfd70_2
conda-forge::scipy-1.3.1-py36h921218d_2
conda-forge::setuptools-41.4.0-py36_0
conda-forge::zipp-0.6.0-py_0
bioconda::blast-2.6.0-boost1.64_2
conda-forge::importlib_metadata-0.23-py36_0
conda-forge::matplotlib-base-3.1.1-py36hfd891ef_0
conda-forge::pandas-0.25.2-py36hb3f55d8_0
conda-forge::patsy-0.5.1-py_0
conda-forge::pyqt-5.9.2-py36hcca6a23_4
bioconda::samtools-1.9-h10a08f8_12
conda-forge::wheel-0.33.6-py36_0
conda-forge::matplotlib-3.1.1-py36_0
conda-forge::pip-19.3.1-py36_0
conda-forge::pluggy-0.12.0-py_0
conda-forge::statsmodels-0.10.1-py36hc1659b7_0
conda-forge::pytest-5.2.1-py36_0
conda-forge::seaborn-0.9.0-py_1
bioconda::rgi-5.1.0-py36hed695b0_0
DEBUG conda.core.package_cache_data:__init__(599): instantiating ProgressiveFetchExtract with
conda-forge::more-itertools-7.2.0-py_0
conda-forge::tornado-6.0.3-py36h516909a_0
conda-forge::pytest-5.2.1-py36_0
conda-forge::ncurses-6.1-hf484d3e_1002
conda-forge::libdeflate-1.3-h516909a_0
conda-forge::krb5-1.16.3-h05b26f9_1001
conda-forge::libffi-3.2.1-he1b5a44_1006
conda-forge::python-3.6.7-h357f687_1005
conda-forge::tbb-2019.9-hc9558a2_0
bioconda::bwa-0.7.17-hed695b0_6
conda-forge::pyahocorasick-1.4.0-py36h14c3975_0
conda-forge::sqlite-3.30.1-hcee41ef_0
conda-forge::libgfortran-ng-7.3.0-hdf63c60_2
conda-forge::dbus-1.13.6-he372182_0
conda-forge::matplotlib-base-3.1.1-py36hfd891ef_0
conda-forge::libpng-1.6.37-hed695b0_0
conda-forge::readline-8.0-hf8c457e_0
conda-forge::seaborn-0.9.0-py_1
conda-forge::pytz-2019.3-py_0
conda-forge::certifi-2019.9.11-py36_0
conda-forge::bzip2-1.0.8-h516909a_1
conda-forge::boost-cpp-1.64.0-1
conda-forge::liblapack-3.8.0-14_openblas
defaults::libstdcxx-ng-9.1.0-hdf63c60_0
conda-forge::six-1.12.0-py36_1000
conda-forge::zlib-1.2.11-h516909a_1006
bioconda::blast-2.6.0-boost1.64_2
conda-forge::qt-5.9.7-h52cfd70_2
conda-forge::atomicwrites-1.3.0-py_0
conda-forge::icu-58.2-hf484d3e_1000
conda-forge::perl-5.26.2-h516909a_1006
defaults::libgcc-ng-9.1.0-hdf63c60_0
bioconda::bowtie2-2.3.5-py36he860b03_0
conda-forge::xz-5.2.4-h14c3975_1001
conda-forge::pthread-stubs-0.4-h14c3975_1001
conda-forge::libxcb-1.13-h14c3975_1002
conda-forge::ca-certificates-2019.9.11-hecc5488_0
conda-forge::expat-2.2.5-he1b5a44_1004
conda-forge::libgcc-7.2.0-h69d50b8_2
conda-forge::python-dateutil-2.8.0-py_0
conda-forge::packaging-19.2-py_0
conda-forge::py-1.8.0-py_0
conda-forge::gst-plugins-base-1.14.5-h0935bb2_0
conda-forge::libxml2-2.9.9-h13577e0_2
conda-forge::pyparsing-2.4.2-py_0
conda-forge::wheel-0.33.6-py36_0
defaults::_libgcc_mutex-0.1-main
conda-forge::pip-19.3.1-py36_0
conda-forge::xorg-libxdmcp-1.1.3-h516909a_0
conda-forge::attrs-19.3.0-py_0
conda-forge::freetype-2.10.0-he983fc9_1
conda-forge::boost-1.64.0-py36_4
conda-forge::cycler-0.10.0-py_1
conda-forge::pcre-8.43-he1b5a44_0
conda-forge::libcurl-7.65.3-hda55be3_0
conda-forge::statsmodels-0.10.1-py36hc1659b7_0
bioconda::samtools-1.9-h10a08f8_12
conda-forge::importlib_metadata-0.23-py36_0
conda-forge::openssl-1.1.1c-h516909a_0
conda-forge::xorg-libxau-1.0.9-h14c3975_0
conda-forge::mock-3.0.5-py36_0
bioconda::htslib-1.9-h4da6232_3
conda-forge::gstreamer-1.14.5-h36ae1b5_0
conda-forge::patsy-0.5.1-py_0
conda-forge::gettext-0.19.8.1-hc5be6a0_1002
bioconda::bedtools-2.29.0-h6ed99ea_1
conda-forge::zipp-0.6.0-py_0
bioconda::bamtools-2.5.1-he860b03_5
conda-forge::libblas-3.8.0-14_openblas
conda-forge::matplotlib-3.1.1-py36_0
conda-forge::libuuid-2.32.1-h14c3975_1000
conda-forge::biopython-1.72-py36h14c3975_1000
conda-forge::libiconv-1.15-h516909a_1005
conda-forge::scipy-1.3.1-py36h921218d_2
conda-forge::sip-4.19.8-py36hf484d3e_1000
conda-forge::curl-7.65.3-hf8cf82a_0
conda-forge::filetype-1.0.5-py_0
conda-forge::libedit-3.1.20170329-hf8c457e_1001
conda-forge::jpeg-9c-h14c3975_1001
conda-forge::pyqt-5.9.2-py36hcca6a23_4
conda-forge::numpy-1.17.2-py36h95a1406_0
bioconda::diamond-0.8.36-hdbcaa40_3
conda-forge::wcwidth-0.1.7-py_1
bioconda::pyfaidx-0.5.5.2-py_1
bioconda::prodigal-2.6.3-1
conda-forge::fontconfig-2.13.1-he4413a7_1000
conda-forge::glib-2.58.3-h6f030ca_1002
conda-forge::tk-8.6.9-hed695b0_1003
conda-forge::libcblas-3.8.0-14_openblas
conda-forge::libopenblas-0.3.7-h6e990d7_2
conda-forge::libssh2-1.8.2-h22169c7_2
conda-forge::pandas-0.25.2-py36hb3f55d8_0
bioconda::rgi-5.1.0-py36hed695b0_0
conda-forge::kiwisolver-1.1.0-py36hc9558a2_0
conda-forge::setuptools-41.4.0-py36_0
conda-forge::pluggy-0.12.0-py_0
DEBUG conda.core.package_cache_data:_check_writable(259): package cache directory '/home/pvh/anaconda3/pkgs' writable: True
## Package Plan ##
environment location: /home/pvh/anaconda3/envs/rgi
added / updated specs:
- rgi=5.1.0
The following packages will be downloaded:
package | build
---------------------------|-----------------
attrs-19.3.0 | py_0 35 KB conda-forge
bamtools-2.5.1 | he860b03_5 1.1 MB bioconda
biopython-1.72 |py36h14c3975_1000 2.4 MB conda-forge
blast-2.6.0 | boost1.64_2 246.7 MB bioconda
boost-1.64.0 | py36_4 331 KB conda-forge
boost-cpp-1.64.0 | 1 17.8 MB conda-forge
bowtie2-2.3.5 | py36he860b03_0 12.0 MB bioconda
diamond-0.8.36 | hdbcaa40_3 497 KB bioconda
filetype-1.0.5 | py_0 13 KB conda-forge
kiwisolver-1.1.0 | py36hc9558a2_0 86 KB conda-forge
libblas-3.8.0 | 14_openblas 10 KB conda-forge
libcblas-3.8.0 | 14_openblas 10 KB conda-forge
liblapack-3.8.0 | 14_openblas 10 KB conda-forge
libopenblas-0.3.7 | h6e990d7_2 7.6 MB conda-forge
matplotlib-3.1.1 | py36_0 6 KB conda-forge
matplotlib-base-3.1.1 | py36hfd891ef_0 6.7 MB conda-forge
mock-3.0.5 | py36_0 44 KB conda-forge
pandas-0.25.2 | py36hb3f55d8_0 11.4 MB conda-forge
pcre-8.43 | he1b5a44_0 257 KB conda-forge
pip-19.3.1 | py36_0 1.9 MB conda-forge
prodigal-2.6.3 | 1 904 KB bioconda
pyahocorasick-1.4.0 | py36h14c3975_0 35 KB conda-forge
pyfaidx-0.5.5.2 | py_1 26 KB bioconda
pyqt-5.9.2 | py36hcca6a23_4 5.7 MB conda-forge
pytest-5.2.1 | py36_0 354 KB conda-forge
qt-5.9.7 | h52cfd70_2 85.9 MB conda-forge
rgi-5.1.0 | py36hed695b0_0 1.9 MB bioconda
scipy-1.3.1 | py36h921218d_2 18.1 MB conda-forge
sip-4.19.8 |py36hf484d3e_1000 290 KB conda-forge
statsmodels-0.10.1 | py36hc1659b7_0 9.6 MB conda-forge
tornado-6.0.3 | py36h516909a_0 636 KB conda-forge
------------------------------------------------------------
Total: 432.3 MB
The following NEW packages will be INSTALLED:
_libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main
atomicwrites conda-forge/noarch::atomicwrites-1.3.0-py_0
attrs conda-forge/noarch::attrs-19.3.0-py_0
bamtools bioconda/linux-64::bamtools-2.5.1-he860b03_5
bedtools bioconda/linux-64::bedtools-2.29.0-h6ed99ea_1
biopython conda-forge/linux-64::biopython-1.72-py36h14c3975_1000
blast bioconda/linux-64::blast-2.6.0-boost1.64_2
boost conda-forge/linux-64::boost-1.64.0-py36_4
boost-cpp conda-forge/linux-64::boost-cpp-1.64.0-1
bowtie2 bioconda/linux-64::bowtie2-2.3.5-py36he860b03_0
bwa bioconda/linux-64::bwa-0.7.17-hed695b0_6
bzip2 conda-forge/linux-64::bzip2-1.0.8-h516909a_1
ca-certificates conda-forge/linux-64::ca-certificates-2019.9.11-hecc5488_0
certifi conda-forge/linux-64::certifi-2019.9.11-py36_0
curl conda-forge/linux-64::curl-7.65.3-hf8cf82a_0
cycler conda-forge/noarch::cycler-0.10.0-py_1
dbus conda-forge/linux-64::dbus-1.13.6-he372182_0
diamond bioconda/linux-64::diamond-0.8.36-hdbcaa40_3
expat conda-forge/linux-64::expat-2.2.5-he1b5a44_1004
filetype conda-forge/noarch::filetype-1.0.5-py_0
fontconfig conda-forge/linux-64::fontconfig-2.13.1-he4413a7_1000
freetype conda-forge/linux-64::freetype-2.10.0-he983fc9_1
gettext conda-forge/linux-64::gettext-0.19.8.1-hc5be6a0_1002
glib conda-forge/linux-64::glib-2.58.3-h6f030ca_1002
gst-plugins-base conda-forge/linux-64::gst-plugins-base-1.14.5-h0935bb2_0
gstreamer conda-forge/linux-64::gstreamer-1.14.5-h36ae1b5_0
htslib bioconda/linux-64::htslib-1.9-h4da6232_3
icu conda-forge/linux-64::icu-58.2-hf484d3e_1000
importlib_metadata conda-forge/linux-64::importlib_metadata-0.23-py36_0
jpeg conda-forge/linux-64::jpeg-9c-h14c3975_1001
kiwisolver conda-forge/linux-64::kiwisolver-1.1.0-py36hc9558a2_0
krb5 conda-forge/linux-64::krb5-1.16.3-h05b26f9_1001
libblas conda-forge/linux-64::libblas-3.8.0-14_openblas
libcblas conda-forge/linux-64::libcblas-3.8.0-14_openblas
libcurl conda-forge/linux-64::libcurl-7.65.3-hda55be3_0
libdeflate conda-forge/linux-64::libdeflate-1.3-h516909a_0
libedit conda-forge/linux-64::libedit-3.1.20170329-hf8c457e_1001
libffi conda-forge/linux-64::libffi-3.2.1-he1b5a44_1006
libgcc conda-forge/linux-64::libgcc-7.2.0-h69d50b8_2
libgcc-ng pkgs/main/linux-64::libgcc-ng-9.1.0-hdf63c60_0
libgfortran-ng conda-forge/linux-64::libgfortran-ng-7.3.0-hdf63c60_2
libiconv conda-forge/linux-64::libiconv-1.15-h516909a_1005
liblapack conda-forge/linux-64::liblapack-3.8.0-14_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.7-h6e990d7_2
libpng conda-forge/linux-64::libpng-1.6.37-hed695b0_0
libssh2 conda-forge/linux-64::libssh2-1.8.2-h22169c7_2
libstdcxx-ng pkgs/main/linux-64::libstdcxx-ng-9.1.0-hdf63c60_0
libuuid conda-forge/linux-64::libuuid-2.32.1-h14c3975_1000
libxcb conda-forge/linux-64::libxcb-1.13-h14c3975_1002
libxml2 conda-forge/linux-64::libxml2-2.9.9-h13577e0_2
matplotlib conda-forge/linux-64::matplotlib-3.1.1-py36_0
matplotlib-base conda-forge/linux-64::matplotlib-base-3.1.1-py36hfd891ef_0
mock conda-forge/linux-64::mock-3.0.5-py36_0
more-itertools conda-forge/noarch::more-itertools-7.2.0-py_0
ncurses conda-forge/linux-64::ncurses-6.1-hf484d3e_1002
numpy conda-forge/linux-64::numpy-1.17.2-py36h95a1406_0
openssl conda-forge/linux-64::openssl-1.1.1c-h516909a_0
packaging conda-forge/noarch::packaging-19.2-py_0
pandas conda-forge/linux-64::pandas-0.25.2-py36hb3f55d8_0
patsy conda-forge/noarch::patsy-0.5.1-py_0
pcre conda-forge/linux-64::pcre-8.43-he1b5a44_0
perl conda-forge/linux-64::perl-5.26.2-h516909a_1006
pip conda-forge/linux-64::pip-19.3.1-py36_0
pluggy conda-forge/noarch::pluggy-0.12.0-py_0
prodigal bioconda/linux-64::prodigal-2.6.3-1
pthread-stubs conda-forge/linux-64::pthread-stubs-0.4-h14c3975_1001
py conda-forge/noarch::py-1.8.0-py_0
pyahocorasick conda-forge/linux-64::pyahocorasick-1.4.0-py36h14c3975_0
pyfaidx bioconda/noarch::pyfaidx-0.5.5.2-py_1
pyparsing conda-forge/noarch::pyparsing-2.4.2-py_0
pyqt conda-forge/linux-64::pyqt-5.9.2-py36hcca6a23_4
pytest conda-forge/linux-64::pytest-5.2.1-py36_0
python conda-forge/linux-64::python-3.6.7-h357f687_1005
python-dateutil conda-forge/noarch::python-dateutil-2.8.0-py_0
pytz conda-forge/noarch::pytz-2019.3-py_0
qt conda-forge/linux-64::qt-5.9.7-h52cfd70_2
readline conda-forge/linux-64::readline-8.0-hf8c457e_0
rgi bioconda/linux-64::rgi-5.1.0-py36hed695b0_0
samtools bioconda/linux-64::samtools-1.9-h10a08f8_12
scipy conda-forge/linux-64::scipy-1.3.1-py36h921218d_2
seaborn conda-forge/noarch::seaborn-0.9.0-py_1
setuptools conda-forge/linux-64::setuptools-41.4.0-py36_0
sip conda-forge/linux-64::sip-4.19.8-py36hf484d3e_1000
six conda-forge/linux-64::six-1.12.0-py36_1000
sqlite conda-forge/linux-64::sqlite-3.30.1-hcee41ef_0
statsmodels conda-forge/linux-64::statsmodels-0.10.1-py36hc1659b7_0
tbb conda-forge/linux-64::tbb-2019.9-hc9558a2_0
tk conda-forge/linux-64::tk-8.6.9-hed695b0_1003
tornado conda-forge/linux-64::tornado-6.0.3-py36h516909a_0
wcwidth conda-forge/noarch::wcwidth-0.1.7-py_1
wheel conda-forge/linux-64::wheel-0.33.6-py36_0
xorg-libxau conda-forge/linux-64::xorg-libxau-1.0.9-h14c3975_0
xorg-libxdmcp conda-forge/linux-64::xorg-libxdmcp-1.1.3-h516909a_0
xz conda-forge/linux-64::xz-5.2.4-h14c3975_1001
zipp conda-forge/noarch::zipp-0.6.0-py_0
zlib conda-forge/linux-64::zlib-1.2.11-h516909a_1006
DryRunExit: Dry run. Exiting.
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