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May 23, 2011 18:07
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Bio::Chado::Schema build log/install error 4
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| cpanm (App::cpanminus) 1.4007 on perl 5.010000 built for i486-linux-gnu-thread-multi | |
| Work directory is /home/ray/.cpanm/work/1306173667.22117 | |
| You have make /usr/bin/make | |
| You have LWP 5.813 | |
| You have /bin/tar: tar (GNU tar) 1.20 | |
| Copyright (C) 2008 Free Software Foundation, Inc. | |
| License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> | |
| This is free software: you are free to change and redistribute it. | |
| There is NO WARRANTY, to the extent permitted by law. | |
| Written by John Gilmore and Jay Fenlason. | |
| You have /usr/bin/unzip | |
| Searching Bio::Chado::Schema on cpanmetadb ... | |
| Checking if you have ExtUtils::MakeMaker 6.31 ... Yes (6.56) | |
| Checking if you have ExtUtils::Install 1.46 ... Yes (1.54) | |
| Checking if you have Module::Build 0.36 ... Yes (0.3800) | |
| --> Working on Bio::Chado::Schema | |
| Fetching http://search.cpan.org/CPAN/authors/id/R/RB/RBUELS/Bio-Chado-Schema-0.08100.tar.gz | |
| -> OK | |
| Unpacking Bio-Chado-Schema-0.08100.tar.gz | |
| Entering Bio-Chado-Schema-0.08100 | |
| Checking configure dependencies from META.yml | |
| Checking if you have ExtUtils::MakeMaker 6.31 ... Yes (6.56) | |
| Configuring Bio-Chado-Schema-0.08100 | |
| Running Makefile.PL | |
| Warning: prerequisite Bio::PrimarySeq 0 not found. | |
| Warning: prerequisite Bio::Root::Version 1.005002 not found. | |
| Warning: prerequisite DBIx::Class 0 not found. | |
| Warning: prerequisite DBIx::Class::Core 0 not found. | |
| Warning: prerequisite DBIx::Class::ResultSet 0 not found. | |
| Warning: prerequisite DBIx::Class::Schema 0 not found. | |
| Warning: prerequisite DBIx::Class::Tree::NestedSet 0.07 not found. | |
| Warning: prerequisite SQL::Translator 0.11005 not found. | |
| Warning: prerequisite Test::Exception 0.27 not found. | |
| Checking if your kit is complete... | |
| Looks good | |
| Writing Makefile for Bio::Chado::Schema | |
| -> OK | |
| Finding PREREQ from Makefile ... | |
| Checking if you have Test::Exception 0.27 ... No | |
| Checking if you have SQL::Translator 0.11005 ... No | |
| Checking if you have DBIx::Class::Schema 0 ... No | |
| Checking if you have FindBin 0 ... Yes (1.49) | |
| Checking if you have DBD::SQLite 1.14 ... Yes (1.29) | |
| Checking if you have DBIx::Class::ResultSet 0 ... No | |
| Checking if you have Bio::Root::Version 1.005002 ... No | |
| Checking if you have DBIx::Class::Core 0 ... No | |
| Checking if you have Carp 0 ... Yes (1.08) | |
| Checking if you have Test::More 0.87 ... Yes (0.98) | |
| Checking if you have Carp::Clan 0 ... Yes (6.04) | |
| Checking if you have DBIx::Class::Tree::NestedSet 0.07 ... No | |
| Checking if you have Bio::PrimarySeq 0 ... No | |
| Checking if you have DBIx::Class 0 ... No | |
| ==> Found dependencies: Test::Exception, SQL::Translator, DBIx::Class::Schema, DBIx::Class::ResultSet, Bio::Root::Version, DBIx::Class::Core, DBIx::Class::Tree::NestedSet, Bio::PrimarySeq, DBIx::Class | |
| Searching Test::Exception on cpanmetadb ... | |
| --> Working on Test::Exception | |
| Fetching http://search.cpan.org/CPAN/authors/id/A/AD/ADIE/Test-Exception-0.31.tar.gz | |
| -> OK | |
| Unpacking Test-Exception-0.31.tar.gz | |
| Entering Test-Exception-0.31 | |
| Checking configure dependencies from META.yml | |
| Checking if you have Module::Build 0.36 ... Yes (0.3800) | |
| Configuring Test-Exception-0.31 | |
| Running Build.PL | |
| Checking prerequisites... | |
| requires: | |
| ! Sub::Uplevel is not installed | |
| ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions | |
| of the modules indicated above before proceeding with this installation | |
| Created MYMETA.yml and MYMETA.json | |
| Creating new 'Build' script for 'Test-Exception' version '0.31' | |
| -> OK | |
| Checking dependencies from MYMETA.yml ... | |
| Checking if you have Test::More 0.7 ... Yes (0.98) | |
| Checking if you have Test::Harness 2.03 ... Yes (3.23) | |
| Checking if you have Test::Builder 0.7 ... Yes (0.98) | |
| Checking if you have Sub::Uplevel 0.18 ... No | |
| Checking if you have Test::Simple 0.7 ... Yes (0.98) | |
| Checking if you have Test::Builder::Tester 1.07 ... Yes (1.22) | |
| ==> Found dependencies: Sub::Uplevel | |
| Searching Sub::Uplevel on cpanmetadb ... | |
| --> Working on Sub::Uplevel | |
| Fetching http://search.cpan.org/CPAN/authors/id/D/DA/DAGOLDEN/Sub-Uplevel-0.22.tar.gz | |
| -> OK | |
| Unpacking Sub-Uplevel-0.22.tar.gz | |
| Entering Sub-Uplevel-0.22 | |
| Checking configure dependencies from META.yml | |
| Checking if you have Module::Build 0.35 ... Yes (0.3800) | |
| Configuring Sub-Uplevel-0.22 | |
| Running Build.PL | |
| Created MYMETA.yml and MYMETA.json | |
| Creating new 'Build' script for 'Sub-Uplevel' version '0.22' | |
| -> OK | |
| Checking dependencies from MYMETA.yml ... | |
| Checking if you have Test::More 0.47 ... Yes (0.98) | |
| Checking if you have Carp 0 ... Yes (1.08) | |
| Building and testing Sub-Uplevel-0.22 | |
| Building Sub-Uplevel | |
| t/01_die_check.t ............. ok | |
| t/02_uplevel.t ............... ok | |
| t/03_nested_uplevels.t ....... ok | |
| t/04_honor_later_override.t .. ok | |
| t/05_honor_prior_override.t .. ok | |
| t/06_db_args.t ............... ok | |
| t/07_uplevel_too_high.t ...... ok | |
| t/08_exporter.t .............. ok | |
| All tests successful. | |
| Files=8, Tests=154, 0 wallclock secs ( 0.07 usr 0.01 sys + 0.29 cusr 0.04 csys = 0.41 CPU) | |
| Result: PASS | |
| Building Sub-Uplevel | |
| !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! | |
| ERROR: Can't create '/usr/local/man/man3' | |
| Do not have write permissions on '/usr/local/man/man3' | |
| !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! | |
| at /home/ray/cxgn/local-lib/lib/perl5/Module/Build/Base.pm line 3569 | |
| -> FAIL Installing Sub::Uplevel failed. See /home/ray/.cpanm/build.log for details. | |
| -> FAIL Bailing out the installation for Test-Exception-0.31. Retry with --prompt or --force. | |
| Searching SQL::Translator on cpanmetadb ... | |
| --> Working on SQL::Translator | |
| Fetching http://search.cpan.org/CPAN/authors/id/J/JR/JROBINSON/SQL-Translator-0.11008.tar.gz | |
| -> OK | |
| Unpacking SQL-Translator-0.11008.tar.gz | |
| Entering SQL-Translator-0.11008 | |
| Checking configure dependencies from META.yml | |
| Checking if you have ExtUtils::MakeMaker 6.42 ... Yes (6.56) | |
| Configuring SQL-Translator-0.11008 | |
| Running Makefile.PL | |
| *** Module::AutoInstall version 1.03 | |
| *** Checking for Perl dependencies... | |
| *** Since we're running under CPAN, I'll just let it take care | |
| of the dependency's installation later. | |
| [Core Features] | |
| - Test::More ...loaded. (0.98 >= 0.6) | |
| - Test::Exception ...missing. | |
| - Test::Differences ...missing. | |
| - YAML ...loaded. (0.73 >= 0.66) | |
| - File::Basename ...loaded. (2.76) | |
| - ExtUtils::MakeMaker ...loaded. (6.56 >= 6.11) | |
| - Scalar::Util ...loaded. (1.19) | |
| - IO::Scalar ...loaded. (2.110 >= 2.11) | |
| - Pod::Usage ...loaded. (1.35) | |
| - File::Spec ...loaded. (3.33) | |
| - Class::Accessor::Fast ...loaded. (0.34) | |
| - File::ShareDir ...loaded. (1.03 >= 1) | |
| - Class::Data::Inheritable ...loaded. (0.08 >= 0.02) | |
| - DBI ...loaded. (1.611) | |
| - Class::Base ...loaded. (0.03) | |
| - Digest::SHA1 ...loaded. (2.11 >= 2) | |
| - Moo ...loaded. (0.009007 >= 0.009007) | |
| - Parse::RecDescent ...missing. (would need 1.962002) | |
| - Class::MakeMethods ...loaded. (1.01) | |
| - XML::Writer ...loaded. (0.612 >= 0.5) | |
| - Carp::Clan ...loaded. (6.04) | |
| - IO::Dir ...loaded. (1.06) | |
| *** Module::AutoInstall configuration finished. | |
| Checking if your kit is complete... | |
| Looks good | |
| Warning: prerequisite Parse::RecDescent 1.962002 not found. | |
| Warning: prerequisite Test::Differences 0 not found. | |
| Warning: prerequisite Test::Exception 0 not found. | |
| Writing Makefile for SQL::Translator | |
| Writing MYMETA.yml | |
| -> OK | |
| Checking dependencies from MYMETA.yml ... | |
| Finding PREREQ from Makefile ... | |
| Checking if you have Scalar::Util 0 ... Yes (1.19) | |
| Checking if you have IO::Scalar 2.11 ... Yes (2.110) | |
| Checking if you have Class::Base 0 ... Yes (0.03) | |
| Checking if you have Pod::Usage 0 ... Yes (1.35) | |
| Checking if you have Digest::SHA1 2 ... Yes (2.11) | |
| Checking if you have Moo 0.009007 ... Yes (0.009007) | |
| Checking if you have File::Spec 0 ... Yes (3.33) | |
| Checking if you have Class::Accessor::Fast 0 ... Yes (0.34) | |
| Checking if you have Parse::RecDescent 1.962002 ... No | |
| Checking if you have Class::MakeMethods 0 ... Yes (1.01) | |
| Checking if you have File::ShareDir 1 ... Yes (1.03) | |
| Checking if you have XML::Writer 0.5 ... Yes (0.612) | |
| Checking if you have Carp::Clan 0 ... Yes (6.04) | |
| Checking if you have Class::Data::Inheritable 0.02 ... Yes (0.08) | |
| Checking if you have IO::Dir 0 ... Yes (1.06) | |
| Checking if you have DBI 0 ... Yes (1.611) | |
| Checking if you have Test::More 0.6 ... Yes (0.98) | |
| Checking if you have YAML 0.66 ... Yes (0.73) | |
| Checking if you have Test::Exception 0 ... No | |
| Checking if you have Test::Differences 0 ... No | |
| Checking if you have ExtUtils::MakeMaker 6.42 ... Yes (6.56) | |
| Checking if you have File::Basename 0 ... Yes (2.76) | |
| Checking if you have Scalar::Util 0 ... Yes (1.19) | |
| Checking if you have IO::Scalar 2.11 ... Yes (2.110) | |
| Checking if you have YAML 0.66 ... Yes (0.73) | |
| Checking if you have Pod::Usage 0 ... Yes (1.35) | |
| Checking if you have File::Spec 0 ... Yes (3.33) | |
| Checking if you have Class::Accessor::Fast 0 ... Yes (0.34) | |
| Checking if you have File::ShareDir 1 ... Yes (1.03) | |
| Checking if you have Class::Data::Inheritable 0.02 ... Yes (0.08) | |
| Checking if you have DBI 0 ... Yes (1.611) | |
| Checking if you have Class::Base 0 ... Yes (0.03) | |
| Checking if you have Digest::SHA1 2 ... Yes (2.11) | |
| Checking if you have Moo 0.009007 ... Yes (0.009007) | |
| Checking if you have ExtUtils::MakeMaker 6.42 ... Yes (6.56) | |
| Checking if you have Test::More 0.6 ... Yes (0.98) | |
| Checking if you have Class::MakeMethods 0 ... Yes (1.01) | |
| Checking if you have XML::Writer 0.5 ... Yes (0.612) | |
| Checking if you have Carp::Clan 0 ... Yes (6.04) | |
| Checking if you have File::Basename 0 ... Yes (2.76) | |
| Checking if you have IO::Dir 0 ... Yes (1.06) | |
| ==> Found dependencies: Parse::RecDescent, Test::Exception, Test::Differences | |
| Searching Parse::RecDescent on cpanmetadb ... | |
| --> Working on Parse::RecDescent | |
| Fetching http://search.cpan.org/CPAN/authors/id/D/DC/DCONWAY/Parse-RecDescent-1.965001.tar.gz | |
| -> OK | |
| Unpacking Parse-RecDescent-1.965001.tar.gz | |
| Entering Parse-RecDescent-1.965001 | |
| Checking configure dependencies from META.yml | |
| Configuring Parse-RecDescent-1.965001 | |
| Running Build.PL | |
| Created MYMETA.yml and MYMETA.json | |
| Creating new 'Build' script for 'Parse-RecDescent' version '1.965001' | |
| -> OK | |
| Checking dependencies from MYMETA.yml ... | |
| Checking if you have Test::More 0 ... Yes (0.98) | |
| Checking if you have version 0 ... Yes (0.88) | |
| Checking if you have Text::Balanced 0 ... Yes (2.0.0) | |
| Building and testing Parse-RecDescent-1.965001 | |
| Building Parse-RecDescent | |
| # Testing Parse::RecDescent 1.965001 | |
| t/00.load.t ............... ok | |
| t/basics.t ................ ok | |
| t/leftop_cap.t ............ ok | |
| t/pod.t ................... skipped: Test::Pod 1.14 required for testing POD | |
| t/re_capture_return.t ..... ok | |
| t/separated_repetition.t .. ok | |
| All tests successful. | |
| Files=6, Tests=28, 1 wallclock secs ( 0.04 usr 0.02 sys + 0.44 cusr 0.03 csys = 0.53 CPU) | |
| Result: PASS | |
| Building Parse-RecDescent | |
| !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! | |
| ERROR: Can't create '/usr/local/man/man3' | |
| Do not have write permissions on '/usr/local/man/man3' | |
| !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! | |
| at /home/ray/cxgn/local-lib/lib/perl5/Module/Build/Base.pm line 3569 | |
| -> FAIL Installing Parse::RecDescent failed. See /home/ray/.cpanm/build.log for details. | |
| Already tried Test::Exception. Skipping. | |
| Searching Test::Differences on cpanmetadb ... | |
| --> Working on Test::Differences | |
| Fetching http://search.cpan.org/CPAN/authors/id/O/OV/OVID/Test-Differences-0.61.tar.gz | |
| -> OK | |
| Unpacking Test-Differences-0.61.tar.gz | |
| Entering Test-Differences-0.61 | |
| Checking configure dependencies from META.yml | |
| Checking if you have Module::Build 0.36 ... Yes (0.3800) | |
| Configuring Test-Differences-0.61 | |
| Running Build.PL | |
| Created MYMETA.yml and MYMETA.json | |
| Creating new 'Build' script for 'Test-Differences' version '0.61' | |
| -> OK | |
| Checking dependencies from MYMETA.yml ... | |
| Checking if you have Text::Diff 0.35 ... Yes (1.41) | |
| Checking if you have Test::More 0 ... Yes (0.98) | |
| Checking if you have Data::Dumper 2.126 ... Yes (2.128) | |
| Building and testing Test-Differences-0.61 | |
| Building Test-Differences | |
| # Testing Test::Differences 0.61, Perl 5.010000, /usr/bin/perl | |
| t/00-load.t ....... ok | |
| t/boilerplate.t ... ok | |
| t/diff_styles.t ... ok | |
| t/example.t ....... ok | |
| t/flatten.t ....... ok | |
| t/pass.t .......... ok | |
| t/pod-coverage.t .. skipped: Test::Pod::Coverage 1.08 required for testing POD coverage | |
| t/pod.t ........... skipped: Test::Pod 1.22 required for testing POD | |
| t/regression.t .... ok | |
| t/struct.t ........ ok | |
| # This test misuses TODO: these TODOs are actually real tests. | |
| t/test.t .......... ok | |
| t/text_vs_data.t .. ok | |
| t/undef.t ......... ok | |
| All tests successful. | |
| Files=13, Tests=43, 0 wallclock secs ( 0.10 usr 0.01 sys + 0.50 cusr 0.08 csys = 0.69 CPU) | |
| Result: PASS | |
| Building Test-Differences | |
| !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! | |
| ERROR: Can't create '/usr/local/man/man3' | |
| Do not have write permissions on '/usr/local/man/man3' | |
| !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! | |
| at /home/ray/cxgn/local-lib/lib/perl5/Module/Build/Base.pm line 3569 | |
| -> FAIL Installing Test::Differences failed. See /home/ray/.cpanm/build.log for details. | |
| -> FAIL Bailing out the installation for SQL-Translator-0.11008. Retry with --prompt or --force. | |
| Searching DBIx::Class::Schema on cpanmetadb ... | |
| --> Working on DBIx::Class::Schema | |
| Fetching http://search.cpan.org/CPAN/authors/id/F/FR/FREW/DBIx-Class-0.08192.tar.gz | |
| -> OK | |
| Unpacking DBIx-Class-0.08192.tar.gz | |
| Entering DBIx-Class-0.08192 | |
| Checking configure dependencies from META.yml | |
| Checking if you have ExtUtils::MakeMaker 6.42 ... Yes (6.56) | |
| Configuring DBIx-Class-0.08192 | |
| Running Makefile.PL | |
| *** Module::AutoInstall version 1.03 | |
| *** Checking for Perl dependencies... | |
| *** Since we're running under CPAN, I'll just let it take care | |
| of the dependency's installation later. | |
| [Core Features] | |
| - DBD::SQLite ...loaded. (1.29 >= 1.29) | |
| - File::Temp ...loaded. (0.22 >= 0.22) | |
| - Package::Stash ...loaded. (0.29 >= 0.28) | |
| - Test::Builder ...loaded. (0.98 >= 0.33) | |
| - Test::Exception ...missing. (would need 0.31) | |
| - Test::More ...loaded. (0.98 >= 0.92) | |
| - Test::Warn ...missing. (would need 0.21) | |
| - Class::Accessor::Grouped ...missing. (would need 0.10002) | |
| - Class::C3::Componentised ...missing. (would need 1.0009) | |
| - Class::Inspector ...loaded. (1.25 >= 1.24) | |
| - Config::Any ...loaded. (0.20 >= 0.20) | |
| - Context::Preserve ...missing. (would need 0.01) | |
| - DBI ...loaded. (1.611 >= 1.57) | |
| - Data::Dumper::Concise ...loaded. (2.020 >= 2.020) | |
| - Data::Page ...missing. (would need 2.00) | |
| - File::Path ...loaded. (2.08 >= 2.07) | |
| - Hash::Merge ...loaded. (0.12 >= 0.12) | |
| - MRO::Compat ...loaded. (0.11 >= 0.09) | |
| - Module::Find ...loaded. (0.10 >= 0.06) | |
| - Path::Class ...missing. (would need 0.18) | |
| - SQL::Abstract ...missing. (would need 1.72) | |
| - Scope::Guard ...loaded. (0.20 >= 0.03) | |
| - Sub::Name ...loaded. (0.05 >= 0.04) | |
| - Try::Tiny ...loaded. (0.09 >= 0.04) | |
| - Variable::Magic ...loaded. (0.46 >= 0.44) | |
| - namespace::clean ...loaded. (0.20 >= 0.20) | |
| *** Module::AutoInstall configuration finished. | |
| Checking if your kit is complete... | |
| Looks good | |
| Warning: prerequisite Class::Accessor::Grouped 0.10002 not found. | |
| Warning: prerequisite Class::C3::Componentised 1.0009 not found. | |
| Warning: prerequisite Context::Preserve 0.01 not found. | |
| Warning: prerequisite Data::Page 2.00 not found. | |
| Warning: prerequisite Path::Class 0.18 not found. | |
| Warning: prerequisite SQL::Abstract 1.72 not found. | |
| Warning: prerequisite Test::Exception 0.31 not found. | |
| Warning: prerequisite Test::Warn 0.21 not found. | |
| Writing Makefile for DBIx::Class | |
| Writing MYMETA.yml | |
| -> OK | |
| Checking dependencies from MYMETA.yml ... | |
| Finding PREREQ from Makefile ... | |
| Checking if you have Scope::Guard 0.03 ... Yes (0.20) | |
| Checking if you have Data::Dumper::Concise 2.020 ... Yes (2.020) | |
| Checking if you have File::Path 2.07 ... Yes (2.08) | |
| Checking if you have Config::Any 0.20 ... Yes (0.20) | |
| Checking if you have MRO::Compat 0.09 ... Yes (0.11) | |
| Checking if you have DBI 1.57 ... Yes (1.611) | |
| Checking if you have Class::Accessor::Grouped 0.10002 ... No | |
| Checking if you have Context::Preserve 0.01 ... No | |
| Checking if you have SQL::Abstract 1.72 ... No | |
| Checking if you have Try::Tiny 0.04 ... Yes (0.09) | |
| Checking if you have Hash::Merge 0.12 ... Yes (0.12) | |
| Checking if you have Sub::Name 0.04 ... Yes (0.05) | |
| Checking if you have namespace::clean 0.20 ... Yes (0.20) | |
| Checking if you have Data::Page 2.00 ... No | |
| Checking if you have Class::C3::Componentised 1.0009 ... No | |
| Checking if you have Module::Find 0.06 ... Yes (0.10) | |
| Checking if you have Path::Class 0.18 ... No | |
| Checking if you have Variable::Magic 0.44 ... Yes (0.46) | |
| Checking if you have Class::Inspector 1.24 ... Yes (1.25) | |
| Checking if you have Test::Exception 0.31 ... No | |
| Checking if you have DBD::SQLite 1.29 ... Yes (1.29) | |
| Checking if you have Package::Stash 0.28 ... Yes (0.29) | |
| Checking if you have ExtUtils::MakeMaker 6.42 ... Yes (6.56) | |
| Checking if you have Test::More 0.92 ... Yes (0.98) | |
| Checking if you have Test::Warn 0.21 ... No | |
| Checking if you have Test::Builder 0.33 ... Yes (0.98) | |
| Checking if you have File::Temp 0.22 ... Yes (0.22) | |
| Checking if you have Scope::Guard 0.03 ... Yes (0.20) | |
| Checking if you have DBD::SQLite 1.29 ... Yes (1.29) | |
| Checking if you have Data::Dumper::Concise 2.020 ... Yes (2.020) | |
| Checking if you have Test::Builder 0.33 ... Yes (0.98) | |
| Checking if you have File::Path 2.07 ... Yes (2.08) | |
| Checking if you have Config::Any 0.20 ... Yes (0.20) | |
| Checking if you have MRO::Compat 0.09 ... Yes (0.11) | |
| Checking if you have DBI 1.57 ... Yes (1.611) | |
| Checking if you have Try::Tiny 0.04 ... Yes (0.09) | |
| Checking if you have Hash::Merge 0.12 ... Yes (0.12) | |
| Checking if you have ExtUtils::MakeMaker 6.42 ... Yes (6.56) | |
| Checking if you have Package::Stash 0.28 ... Yes (0.29) | |
| Checking if you have Sub::Name 0.04 ... Yes (0.05) | |
| Checking if you have namespace::clean 0.20 ... Yes (0.20) | |
| Checking if you have Test::More 0.92 ... Yes (0.98) | |
| Checking if you have File::Temp 0.22 ... Yes (0.22) | |
| Checking if you have Module::Find 0.06 ... Yes (0.10) | |
| Checking if you have Class::Inspector 1.24 ... Yes (1.25) | |
| Checking if you have Variable::Magic 0.44 ... Yes (0.46) | |
| ==> Found dependencies: Class::Accessor::Grouped, Context::Preserve, SQL::Abstract, Data::Page, Class::C3::Componentised, Path::Class, Test::Exception, Test::Warn | |
| Searching Class::Accessor::Grouped on cpanmetadb ... | |
| --> Working on Class::Accessor::Grouped | |
| Fetching http://search.cpan.org/CPAN/authors/id/F/FR/FREW/Class-Accessor-Grouped-0.10003.tar.gz | |
| -> OK | |
| Unpacking Class-Accessor-Grouped-0.10003.tar.gz | |
| Entering Class-Accessor-Grouped-0.10003 | |
| Checking configure dependencies from META.yml | |
| Checking if you have ExtUtils::MakeMaker 6.42 ... Yes (6.56) | |
| Configuring Class-Accessor-Grouped-0.10003 | |
| Running Makefile.PL | |
| *** Module::AutoInstall version 1.03 | |
| *** Checking for Perl dependencies... | |
| *** Since we're running under CPAN, I'll just let it take care | |
| of the dependency's installation later. | |
| [Core Features] | |
| - Test::More ...loaded. (0.98 >= 0.94) | |
| - Test::Exception ...missing. (would need 0.31) | |
| - Carp ...loaded. (1.08) | |
| - Scalar::Util ...loaded. (1.19) | |
| - Class::Inspector ...loaded. (1.25) | |
| - Sub::Name ...loaded. (0.05 >= 0.05) | |
| - Class::XSAccessor ...loaded. (1.11 >= 1.11) | |
| *** Module::AutoInstall configuration finished. | |
| Checking if your kit is complete... | |
| Looks good | |
| Warning: prerequisite Test::Exception 0.31 not found. | |
| Writing Makefile for Class::Accessor::Grouped | |
| Writing MYMETA.yml | |
| -> OK | |
| Checking dependencies from MYMETA.yml ... | |
| Finding PREREQ from Makefile ... | |
| Checking if you have Scalar::Util 0 ... Yes (1.19) | |
| Checking if you have Sub::Name 0.05 ... Yes (0.05) | |
| Checking if you have Class::Inspector 0 ... Yes (1.25) | |
| Checking if you have Class::XSAccessor 1.11 ... Yes (1.11) | |
| Checking if you have Carp 0 ... Yes (1.08) | |
| Checking if you have Test::More 0.94 ... Yes (0.98) | |
| Checking if you have Test::Exception 0.31 ... No | |
| Checking if you have ExtUtils::MakeMaker 6.42 ... Yes (6.56) | |
| Checking if you have Scalar::Util 0 ... Yes (1.19) | |
| Checking if you have ExtUtils::MakeMaker 6.42 ... Yes (6.56) | |
| Checking if you have Sub::Name 0.05 ... Yes (0.05) | |
| Checking if you have Class::XSAccessor 1.11 ... Yes (1.11) | |
| Checking if you have Carp 0 ... Yes (1.08) | |
| Checking if you have Test::More 0.94 ... Yes (0.98) | |
| Checking if you have Class::Inspector 0 ... Yes (1.25) | |
| ==> Found dependencies: Test::Exception | |
| Already tried Test::Exception. Skipping. | |
| Building and testing Class-Accessor-Grouped-0.10003 | |
| cp lib/Class/Accessor/Grouped.pm blib/lib/Class/Accessor/Grouped.pm | |
| Manifying blib/man3/Class::Accessor::Grouped.3pm | |
| PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'inc', 'blib/lib', 'blib/arch')" t/accessors.t t/accessors_pp.t t/accessors_ro.t t/accessors_wo.t t/accessors_xs.t t/accessors_xs_cachedwarn.t t/basic.t t/component.t t/inherited.t t/manifest.t t/pod_coverage.t t/pod_syntax.t t/strict.t t/style_no_tabs.t t/warnings.t | |
| t/accessors.t ................ ok | |
| t/accessors_pp.t ............. skipped: Devel::Hide required for this test in presence of Sub::Name | |
| Can't locate Test/Exception.pm in @INC (@INC contains: /home/ray/.cpanm/work/1306173667.22117/Class-Accessor-Grouped-0.10003/inc /home/ray/.cpanm/work/1306173667.22117/Class-Accessor-Grouped-0.10003/blib/lib /home/ray/.cpanm/work/1306173667.22117/Class-Accessor-Grouped-0.10003/blib/arch ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /etc/perl /usr/local/lib/perl/5.10.0 /usr/local/share/perl/5.10.0 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at t/accessors_ro.t line 2. | |
| BEGIN failed--compilation aborted at t/accessors_ro.t line 2. | |
| # Looks like your test exited with 2 before it could output anything. | |
| t/accessors_ro.t ............. | |
| Dubious, test returned 2 (wstat 512, 0x200) | |
| Failed 48/48 subtests | |
| Can't locate Test/Exception.pm in @INC (@INC contains: /home/ray/.cpanm/work/1306173667.22117/Class-Accessor-Grouped-0.10003/inc /home/ray/.cpanm/work/1306173667.22117/Class-Accessor-Grouped-0.10003/blib/lib /home/ray/.cpanm/work/1306173667.22117/Class-Accessor-Grouped-0.10003/blib/arch ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /etc/perl /usr/local/lib/perl/5.10.0 /usr/local/share/perl/5.10.0 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at t/accessors_wo.t line 2. | |
| BEGIN failed--compilation aborted at t/accessors_wo.t line 2. | |
| # Looks like your test exited with 2 before it could output anything. | |
| t/accessors_wo.t ............. | |
| Dubious, test returned 2 (wstat 512, 0x200) | |
| Failed 38/38 subtests | |
| # No tests run! | |
| # Failed test 'No tests run for subtest "accessors_ro.t with USE_XS (pass 1)"' | |
| # at t/accessors_xs.t line 42. | |
| # No tests run! | |
| # Failed test 'No tests run for subtest "accessors_ro.t with USE_XS (pass 2)"' | |
| # at t/accessors_xs.t line 42. | |
| # No tests run! | |
| # Failed test 'No tests run for subtest "accessors_wo.t with USE_XS (pass 1)"' | |
| # at t/accessors_xs.t line 42. | |
| # No tests run! | |
| # Failed test 'No tests run for subtest "accessors_wo.t with USE_XS (pass 2)"' | |
| # at t/accessors_xs.t line 42. | |
| # Looks like you failed 4 tests of 6. | |
| t/accessors_xs.t ............. | |
| Dubious, test returned 4 (wstat 1024, 0x400) | |
| Failed 4/6 subtests | |
| t/accessors_xs_cachedwarn.t .. ok | |
| t/basic.t .................... ok | |
| Can't locate Test/Exception.pm in @INC (@INC contains: /home/ray/.cpanm/work/1306173667.22117/Class-Accessor-Grouped-0.10003/inc /home/ray/.cpanm/work/1306173667.22117/Class-Accessor-Grouped-0.10003/blib/lib /home/ray/.cpanm/work/1306173667.22117/Class-Accessor-Grouped-0.10003/blib/arch ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /etc/perl /usr/local/lib/perl/5.10.0 /usr/local/share/perl/5.10.0 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at t/component.t line 2. | |
| BEGIN failed--compilation aborted at t/component.t line 2. | |
| # Looks like your test exited with 2 before it could output anything. | |
| t/component.t ................ | |
| Dubious, test returned 2 (wstat 512, 0x200) | |
| Failed 8/8 subtests | |
| Can't locate Test/Exception.pm in @INC (@INC contains: /home/ray/.cpanm/work/1306173667.22117/Class-Accessor-Grouped-0.10003/inc /home/ray/.cpanm/work/1306173667.22117/Class-Accessor-Grouped-0.10003/blib/lib /home/ray/.cpanm/work/1306173667.22117/Class-Accessor-Grouped-0.10003/blib/arch ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /etc/perl /usr/local/lib/perl/5.10.0 /usr/local/share/perl/5.10.0 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at t/inherited.t line 2. | |
| BEGIN failed--compilation aborted at t/inherited.t line 2. | |
| # Looks like your test exited with 2 before it could output anything. | |
| t/inherited.t ................ | |
| Dubious, test returned 2 (wstat 512, 0x200) | |
| Failed 36/36 subtests | |
| t/manifest.t ................. skipped: set TEST_AUTHOR to enable this test | |
| t/pod_coverage.t ............. skipped: set TEST_AUTHOR to enable this test | |
| t/pod_syntax.t ............... skipped: set TEST_AUTHOR to enable this test | |
| t/strict.t ................... skipped: set TEST_AUTHOR to enable this test | |
| t/style_no_tabs.t ............ skipped: set TEST_AUTHOR to enable this test | |
| t/warnings.t ................. skipped: set TEST_AUTHOR to enable this test | |
| Test Summary Report | |
| ------------------- | |
| t/accessors_ro.t (Wstat: 512 Tests: 0 Failed: 0) | |
| Non-zero exit status: 2 | |
| Parse errors: Bad plan. You planned 48 tests but ran 0. | |
| t/accessors_wo.t (Wstat: 512 Tests: 0 Failed: 0) | |
| Non-zero exit status: 2 | |
| Parse errors: Bad plan. You planned 38 tests but ran 0. | |
| t/accessors_xs.t (Wstat: 1024 Tests: 6 Failed: 4) | |
| Failed tests: 3-6 | |
| Non-zero exit status: 4 | |
| t/component.t (Wstat: 512 Tests: 0 Failed: 0) | |
| Non-zero exit status: 2 | |
| Parse errors: Bad plan. You planned 8 tests but ran 0. | |
| t/inherited.t (Wstat: 512 Tests: 0 Failed: 0) | |
| Non-zero exit status: 2 | |
| Parse errors: Bad plan. You planned 36 tests but ran 0. | |
| Files=15, Tests=132, 1 wallclock secs ( 0.12 usr 0.02 sys + 0.54 cusr 0.08 csys = 0.76 CPU) | |
| Result: FAIL | |
| Failed 5/15 test programs. 4/132 subtests failed. | |
| make: *** [test_dynamic] Error 255 | |
| -> FAIL Installing Class::Accessor::Grouped failed. See /home/ray/.cpanm/build.log for details. | |
| Searching Context::Preserve on cpanmetadb ... | |
| --> Working on Context::Preserve | |
| Fetching http://search.cpan.org/CPAN/authors/id/J/JR/JROCKWAY/Context-Preserve-0.01.tar.gz | |
| -> OK | |
| Unpacking Context-Preserve-0.01.tar.gz | |
| Entering Context-Preserve-0.01 | |
| Checking configure dependencies from META.yml | |
| Configuring Context-Preserve-0.01 | |
| Running Makefile.PL | |
| Cannot determine perl version info from lib/Context/Preserve.pm | |
| Cannot determine license info from lib/Context/Preserve.pm | |
| Warning: prerequisite Test::Exception 0 not found. | |
| Checking if your kit is complete... | |
| Looks good | |
| Writing Makefile for Context::Preserve | |
| -> OK | |
| Finding PREREQ from Makefile ... | |
| Checking if you have ok 0 ... Yes (0.02) | |
| Checking if you have Test::More 0 ... Yes (0.98) | |
| Checking if you have Test::Exception 0 ... No | |
| Checking if you have Exporter 0 ... Yes (5.63) | |
| ==> Found dependencies: Test::Exception | |
| Already tried Test::Exception. Skipping. | |
| Building and testing Context-Preserve-0.01 | |
| cp lib/Context/Preserve.pm blib/lib/Context/Preserve.pm | |
| Manifying blib/man3/Context::Preserve.3pm | |
| PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'inc', 'blib/lib', 'blib/arch')" t/*.t | |
| t/00-load.t .. ok | |
| Can't locate Test/Exception.pm in @INC (@INC contains: /home/ray/.cpanm/work/1306173667.22117/Context-Preserve-0.01/inc /home/ray/.cpanm/work/1306173667.22117/Context-Preserve-0.01/blib/lib /home/ray/.cpanm/work/1306173667.22117/Context-Preserve-0.01/blib/arch ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /etc/perl /usr/local/lib/perl/5.10.0 /usr/local/share/perl/5.10.0 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at t/basic.t line 5. | |
| BEGIN failed--compilation aborted at t/basic.t line 5. | |
| # Looks like your test exited with 2 before it could output anything. | |
| t/basic.t .... | |
| Dubious, test returned 2 (wstat 512, 0x200) | |
| Failed 12/12 subtests | |
| Test Summary Report | |
| ------------------- | |
| t/basic.t (Wstat: 512 Tests: 0 Failed: 0) | |
| Non-zero exit status: 2 | |
| Parse errors: Bad plan. You planned 12 tests but ran 0. | |
| Files=2, Tests=1, 0 wallclock secs ( 0.03 usr 0.00 sys + 0.05 cusr 0.00 csys = 0.08 CPU) | |
| Result: FAIL | |
| Failed 1/2 test programs. 0/1 subtests failed. | |
| make: *** [test_dynamic] Error 2 | |
| -> FAIL Installing Context::Preserve failed. See /home/ray/.cpanm/build.log for details. | |
| Searching SQL::Abstract on cpanmetadb ... | |
| --> Working on SQL::Abstract | |
| Fetching http://search.cpan.org/CPAN/authors/id/F/FR/FREW/SQL-Abstract-1.72.tar.gz | |
| -> OK | |
| Unpacking SQL-Abstract-1.72.tar.gz | |
| Entering SQL-Abstract-1.72 | |
| Checking configure dependencies from META.yml | |
| Checking if you have ExtUtils::MakeMaker 6.42 ... Yes (6.56) | |
| Configuring SQL-Abstract-1.72 | |
| Running Makefile.PL | |
| *** Module::AutoInstall version 1.03 | |
| *** Checking for Perl dependencies... | |
| *** Since we're running under CPAN, I'll just let it take care | |
| of the dependency's installation later. | |
| [Core Features] | |
| - Test::More ...loaded. (0.98 >= 0.92) | |
| - Test::Deep ...loaded. (0.108 >= 0.106) | |
| - Test::Exception ...missing. | |
| - Test::Warn ...missing. | |
| - Storable ...loaded. (2.18) | |
| - List::Util ...loaded. (1.19) | |
| - Scalar::Util ...loaded. (1.19) | |
| - Class::Accessor::Grouped ...missing. (would need 0.10002) | |
| - Getopt::Long::Descriptive ...missing. (would need 0.086) | |
| - Hash::Merge ...loaded. (0.12 >= 0.12) | |
| *** Module::AutoInstall configuration finished. | |
| Checking if your kit is complete... | |
| Looks good | |
| Warning: prerequisite Class::Accessor::Grouped 0.10002 not found. | |
| Warning: prerequisite Getopt::Long::Descriptive 0.086 not found. | |
| Warning: prerequisite Test::Exception 0 not found. | |
| Warning: prerequisite Test::Warn 0 not found. | |
| Writing Makefile for SQL::Abstract | |
| Writing MYMETA.yml | |
| -> OK | |
| Checking dependencies from MYMETA.yml ... | |
| Finding PREREQ from Makefile ... | |
| Checking if you have Scalar::Util 0 ... Yes (1.19) | |
| Checking if you have List::Util 0 ... Yes (1.19) | |
| Checking if you have Class::Accessor::Grouped 0.10002 ... No | |
| Checking if you have Hash::Merge 0.12 ... Yes (0.12) | |
| Checking if you have Getopt::Long::Descriptive 0.086 ... No | |
| Checking if you have Test::More 0.92 ... Yes (0.98) | |
| Checking if you have Test::Warn 0 ... No | |
| Checking if you have Test::Exception 0 ... No | |
| Checking if you have ExtUtils::MakeMaker 6.42 ... Yes (6.56) | |
| Checking if you have Storable 0 ... Yes (2.18) | |
| Checking if you have Test::Deep 0.106 ... Yes (0.108) | |
| Checking if you have Scalar::Util 0 ... Yes (1.19) | |
| Checking if you have Hash::Merge 0.12 ... Yes (0.12) | |
| Checking if you have ExtUtils::MakeMaker 6.42 ... Yes (6.56) | |
| Checking if you have Storable 0 ... Yes (2.18) | |
| Checking if you have List::Util 0 ... Yes (1.19) | |
| Checking if you have Test::More 0.92 ... Yes (0.98) | |
| Checking if you have Test::Deep 0.106 ... Yes (0.108) | |
| ==> Found dependencies: Class::Accessor::Grouped, Getopt::Long::Descriptive, Test::Warn, Test::Exception | |
| Already tried Class::Accessor::Grouped. Skipping. | |
| Searching Getopt::Long::Descriptive on cpanmetadb ... | |
| --> Working on Getopt::Long::Descriptive | |
| Fetching http://search.cpan.org/CPAN/authors/id/R/RJ/RJBS/Getopt-Long-Descriptive-0.090.tar.gz | |
| -> OK | |
| Unpacking Getopt-Long-Descriptive-0.090.tar.gz | |
| Entering Getopt-Long-Descriptive-0.090 | |
| Checking configure dependencies from META.yml | |
| Checking if you have ExtUtils::MakeMaker 6.31 ... Yes (6.56) | |
| Configuring Getopt-Long-Descriptive-0.090 | |
| Running Makefile.PL | |
| Warning: prerequisite Params::Validate 0.97 not found. | |
| Checking if your kit is complete... | |
| Looks good | |
| Writing Makefile for Getopt::Long::Descriptive | |
| -> OK | |
| Finding PREREQ from Makefile ... | |
| Checking if you have Scalar::Util 0 ... Yes (1.19) | |
| Checking if you have Getopt::Long 2.33 ... Yes (2.37) | |
| Checking if you have overload 0 ... Yes (1.06) | |
| Checking if you have Sub::Exporter 0.972 ... Yes (0.982) | |
| Checking if you have Carp 0 ... Yes (1.08) | |
| Checking if you have List::Util 0 ... Yes (1.19) | |
| Checking if you have Sub::Exporter::Util 0 ... Yes (0.982) | |
| Checking if you have Test::More 0.96 ... Yes (0.98) | |
| Checking if you have Params::Validate 0.97 ... No | |
| Checking if you have File::Basename 0 ... Yes (2.76) | |
| ==> Found dependencies: Params::Validate | |
| Searching Params::Validate on cpanmetadb ... | |
| --> Working on Params::Validate | |
| Fetching http://search.cpan.org/CPAN/authors/id/D/DR/DROLSKY/Params-Validate-0.98.tar.gz | |
| -> OK | |
| Unpacking Params-Validate-0.98.tar.gz | |
| Entering Params-Validate-0.98 | |
| Checking configure dependencies from META.yml | |
| Checking if you have Module::Build 0.3601 ... Yes (0.3800) | |
| Configuring Params-Validate-0.98 | |
| Running Build.PL | |
| Created MYMETA.yml and MYMETA.json | |
| Creating new 'Build' script for 'Params-Validate' version '0.98' | |
| -> OK | |
| Checking dependencies from MYMETA.yml ... | |
| Checking if you have Scalar::Util 1.10 ... Yes (1.19) | |
| Checking if you have Attribute::Handlers 0.79 ... Yes (0.79) | |
| Checking if you have Test::More 0.88 ... Yes (0.98) | |
| Checking if you have Module::Build 0.3601 ... Yes (0.3800) | |
| Checking if you have ExtUtils::CBuilder 0 ... Yes (0.280202) | |
| Building and testing Params-Validate-0.98 | |
| Building Params-Validate | |
| cc -Ic -I/usr/lib/perl/5.10/CORE -DXS_VERSION="0.98" -DVERSION="0.98" -fPIC -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -g -o lib/Params/Validate.o lib/Params/Validate.c | |
| ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Params/Validate/Validate.bs') | |
| cc -shared -O2 -g -L/usr/local/lib -o blib/arch/auto/Params/Validate/Validate.so lib/Params/Validate.o | |
| t/01-validate.t ....................... ok | |
| t/02-noop.t ........................... ok | |
| t/03-attribute.t ...................... ok | |
| t/04-defaults.t ....................... ok | |
| t/05-noop_default.t ................... ok | |
| t/06-options.t ........................ ok | |
| t/07-with.t ........................... ok | |
| t/08-noop_with.t ...................... ok | |
| t/09-regex.t .......................... ok | |
| t/10-noop_regex.t ..................... ok | |
| t/11-cb.t ............................. ok | |
| t/12-noop_cb.t ........................ ok | |
| t/13-taint.t .......................... ok | |
| t/14-no_validate.t .................... ok | |
| t/15-case.t ........................... ok | |
| t/16-normalize.t ...................... ok | |
| t/17-callbacks.t ...................... ok | |
| t/18-depends.t ........................ ok | |
| t/19-untaint.t ........................ skipped: These tests require Test::Taint 0.02+ to run | |
| t/21-can.t ............................ ok | |
| t/22-overload-can-bug.t ............... ok | |
| t/23-readonly.t ....................... ok | |
| t/24-tied.t ........................... ok | |
| t/25-undef-regex.t .................... ok | |
| t/26-isa.t ............................ ok | |
| t/27-string-as-type.t ................. ok | |
| t/28-readonly-return.t ................ ok | |
| t/29-taint-mode.t ..................... skipped: This test is flaky | |
| t/30-hashref-alteration.t ............. ok | |
| t/31-incorrect-spelling.t ............. skipped: Spec validation is disabled for now | |
| t/release-cpan-changes.t .............. skipped: these tests are for release candidate testing | |
| t/release-eol.t ....................... skipped: these tests are for release candidate testing | |
| t/release-no-tabs.t ................... skipped: these tests are for release candidate testing | |
| t/release-pod-coverage.t .............. skipped: these tests are for release candidate testing | |
| t/release-pod-spell.t ................. skipped: these tests are for release candidate testing | |
| t/release-pod-syntax.t ................ skipped: these tests are for release candidate testing | |
| t/release-pp-01-validate.t ............ skipped: these tests are for testing by the release | |
| t/release-pp-02-noop.t ................ skipped: these tests are for testing by the release | |
| t/release-pp-03-attribute.t ........... skipped: these tests are for testing by the release | |
| t/release-pp-04-defaults.t ............ skipped: these tests are for testing by the release | |
| t/release-pp-05-noop_default.t ........ skipped: these tests are for testing by the release | |
| t/release-pp-06-options.t ............. skipped: these tests are for testing by the release | |
| t/release-pp-07-with.t ................ skipped: these tests are for testing by the release | |
| t/release-pp-08-noop_with.t ........... skipped: these tests are for testing by the release | |
| t/release-pp-09-regex.t ............... skipped: these tests are for testing by the release | |
| t/release-pp-10-noop_regex.t .......... skipped: these tests are for testing by the release | |
| t/release-pp-11-cb.t .................. skipped: these tests are for testing by the release | |
| t/release-pp-12-noop_cb.t ............. skipped: these tests are for testing by the release | |
| t/release-pp-13-taint.t ............... skipped: these tests are for testing by the release | |
| t/release-pp-14-no_validate.t ......... skipped: these tests are for testing by the release | |
| t/release-pp-15-case.t ................ skipped: these tests are for testing by the release | |
| t/release-pp-16-normalize.t ........... skipped: these tests are for testing by the release | |
| t/release-pp-17-callbacks.t ........... skipped: these tests are for testing by the release | |
| t/release-pp-18-depends.t ............. skipped: these tests are for testing by the release | |
| t/release-pp-19-untaint.t ............. skipped: these tests are for testing by the release | |
| t/release-pp-21-can.t ................. skipped: these tests are for testing by the release | |
| t/release-pp-22-overload-can-bug.t .... skipped: these tests are for testing by the release | |
| t/release-pp-23-readonly.t ............ skipped: these tests are for testing by the release | |
| t/release-pp-24-tied.t ................ skipped: these tests are for testing by the release | |
| t/release-pp-25-undef-regex.t ......... skipped: these tests are for testing by the release | |
| t/release-pp-26-isa.t ................. skipped: these tests are for testing by the release | |
| t/release-pp-27-string-as-type.t ...... skipped: these tests are for testing by the release | |
| t/release-pp-28-readonly-return.t ..... skipped: these tests are for testing by the release | |
| t/release-pp-29-taint-mode.t .......... skipped: these tests are for testing by the release | |
| t/release-pp-30-hashref-alteration.t .. skipped: these tests are for testing by the release | |
| t/release-pp-31-incorrect-spelling.t .. skipped: these tests are for testing by the release | |
| All tests successful. | |
| Files=66, Tests=499, 2 wallclock secs ( 0.24 usr 0.09 sys + 1.98 cusr 0.34 csys = 2.65 CPU) | |
| Result: PASS | |
| Building Params-Validate | |
| Files found in blib/arch: installing files in blib/lib into architecture dependent library tree | |
| !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! | |
| ERROR: Can't create '/usr/local/lib/perl/5.10.0/Attribute/Params' | |
| mkdir /usr/local/lib/perl/5.10.0/Attribute: Permission denied at /home/ray/cxgn/local-lib/lib/perl5/ExtUtils/Install.pm line 483 | |
| !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! | |
| at /home/ray/cxgn/local-lib/lib/perl5/Module/Build/Base.pm line 3569 | |
| -> FAIL Installing Params::Validate failed. See /home/ray/.cpanm/build.log for details. | |
| -> FAIL Bailing out the installation for Getopt-Long-Descriptive-0.090. Retry with --prompt or --force. | |
| Searching Test::Warn on cpanmetadb ... | |
| --> Working on Test::Warn | |
| Fetching http://search.cpan.org/CPAN/authors/id/C/CH/CHORNY/Test-Warn-0.23.tar.gz | |
| -> OK | |
| Unpacking Test-Warn-0.23.tar.gz | |
| Entering Test-Warn-0.23 | |
| Checking configure dependencies from META.yml | |
| Checking if you have ExtUtils::MakeMaker 0 ... Yes (6.56) | |
| Configuring Test-Warn-0.23 | |
| Running Makefile.PL | |
| Warning: prerequisite Sub::Uplevel 0.12 not found. | |
| Checking if your kit is complete... | |
| Looks good | |
| Writing Makefile for Test::Warn | |
| -> OK | |
| Finding PREREQ from Makefile ... | |
| Checking if you have Test::More 0 ... Yes (0.98) | |
| Checking if you have Test::Builder 0.13 ... Yes (0.98) | |
| Checking if you have File::Spec 0 ... Yes (3.33) | |
| Checking if you have Sub::Uplevel 0.12 ... No | |
| Checking if you have Test::Builder::Tester 1.02 ... Yes (1.22) | |
| Checking if you have Tree::DAG_Node 1.02 ... Yes (1.06) | |
| ==> Found dependencies: Sub::Uplevel | |
| Already tried Sub::Uplevel. Skipping. | |
| Building and testing Test-Warn-0.23 | |
| cp Warn.pm blib/lib/Test/Warn.pm | |
| Manifying blib/man3/Test::Warn.3pm | |
| PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t | |
| Can't locate Sub/Uplevel.pm in @INC (@INC contains: /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/lib /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/arch ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /etc/perl /usr/local/lib/perl/5.10.0 /usr/local/share/perl/5.10.0 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/lib/Test/Warn.pm line 247. | |
| BEGIN failed--compilation aborted at /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/lib/Test/Warn.pm line 247. | |
| Compilation failed in require at t/1.t line 10. | |
| BEGIN failed--compilation aborted at t/1.t line 10. | |
| t/1.t ............... | |
| Dubious, test returned 2 (wstat 512, 0x200) | |
| Failed 1/1 subtests | |
| Can't locate Sub/Uplevel.pm in @INC (@INC contains: /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/lib /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/arch ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /etc/perl /usr/local/lib/perl/5.10.0 /usr/local/share/perl/5.10.0 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/lib/Test/Warn.pm line 247. | |
| BEGIN failed--compilation aborted at /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/lib/Test/Warn.pm line 247. | |
| Compilation failed in require at t/carped.t line 10. | |
| BEGIN failed--compilation aborted at t/carped.t line 10. | |
| # Looks like your test exited with 2 before it could output anything. | |
| t/carped.t .......... | |
| Dubious, test returned 2 (wstat 512, 0x200) | |
| Failed 6/6 subtests | |
| t/pod.t ............. skipped: Test::Pod 1.14 required for testing POD | |
| Can't locate Sub/Uplevel.pm in @INC (@INC contains: ../blib/lib /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/lib /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/arch ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /etc/perl /usr/local/lib/perl/5.10.0 /usr/local/share/perl/5.10.0 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at ../blib/lib/Test/Warn.pm line 247. | |
| BEGIN failed--compilation aborted at ../blib/lib/Test/Warn.pm line 247. | |
| Compilation failed in require at t/warning_is.t line 27. | |
| BEGIN failed--compilation aborted at t/warning_is.t line 27. | |
| # Looks like your test exited with 2 before it could output anything. | |
| t/warning_is.t ...... | |
| Dubious, test returned 2 (wstat 512, 0x200) | |
| Failed 48/48 subtests | |
| Can't locate Sub/Uplevel.pm in @INC (@INC contains: ../blib/lib /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/lib /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/arch ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /etc/perl /usr/local/lib/perl/5.10.0 /usr/local/share/perl/5.10.0 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at ../blib/lib/Test/Warn.pm line 247. | |
| BEGIN failed--compilation aborted at ../blib/lib/Test/Warn.pm line 247. | |
| Compilation failed in require at t/warning_like.t line 28. | |
| BEGIN failed--compilation aborted at t/warning_like.t line 28. | |
| # Looks like your test exited with 2 before it could output anything. | |
| t/warning_like.t .... | |
| Dubious, test returned 2 (wstat 512, 0x200) | |
| Failed 96/96 subtests | |
| Can't locate Sub/Uplevel.pm in @INC (@INC contains: ../blib/lib /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/lib /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/arch ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /etc/perl /usr/local/lib/perl/5.10.0 /usr/local/share/perl/5.10.0 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at ../blib/lib/Test/Warn.pm line 247. | |
| BEGIN failed--compilation aborted at ../blib/lib/Test/Warn.pm line 247. | |
| Compilation failed in require at t/warnings_are.t line 33. | |
| BEGIN failed--compilation aborted at t/warnings_are.t line 33. | |
| # Looks like your test exited with 2 before it could output anything. | |
| t/warnings_are.t .... | |
| Dubious, test returned 2 (wstat 512, 0x200) | |
| Failed 224/224 subtests | |
| # Failed test at t/warnings_exist.t line 36. | |
| # got: 'Can't locate Sub/Uplevel.pm in @INC (@INC contains: /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/arch /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/lib /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/lib /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/arch ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /etc/perl /usr/local/lib/perl/5.10.0 /usr/local/share/perl/5.10.0 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/lib/Test/Warn.pm line 247.' | |
| # expected: 'warn_2 at t/warnings_exist1.pl line 12.' | |
| # Failed test at t/warnings_exist.t line 36. | |
| # got: 'BEGIN failed--compilation aborted at /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/lib/Test/Warn.pm line 247.' | |
| # expected: 'ok 1' | |
| # Failed test at t/warnings_exist.t line 36. | |
| # got: 'Compilation failed in require at t/warnings_exist1.pl line 7.' | |
| # expected: 'ok 2' | |
| # Failed test at t/warnings_exist.t line 36. | |
| # got: 'BEGIN failed--compilation aborted at t/warnings_exist1.pl line 7.' | |
| # expected: 'warn_2 at t/warnings_exist1.pl line 21.' | |
| # Failed test at t/warnings_exist.t line 36. | |
| # got: undef | |
| # expected: 'not ok 3' | |
| # Failed test at t/warnings_exist.t line 36. | |
| # got: undef | |
| # expected: 'warn_2 at t/warnings_exist1.pl line 27.' | |
| # Failed test at t/warnings_exist.t line 36. | |
| # got: undef | |
| # expected: 'ok 4' | |
| # Failed test at t/warnings_exist.t line 36. | |
| # got: undef | |
| # expected: 'warn_2 at t/warnings_exist1.pl line 31.' | |
| # Failed test at t/warnings_exist.t line 36. | |
| # got: undef | |
| # expected: 'not ok 5' | |
| Use of uninitialized value $this in pattern match (m//) at t/warnings_exist.t line 33. | |
| # Failed test at t/warnings_exist.t line 33. | |
| # undef | |
| # doesn't match '(?-xism:^Use of uninitialized value (?:\$a\s+)?in addition \(\+\) at t\/warnings_exist1\.pl line 36\.$)' | |
| # Failed test at t/warnings_exist.t line 36. | |
| # got: undef | |
| # expected: 'ok 6' | |
| # Failed test at t/warnings_exist.t line 36. | |
| # got: undef | |
| # expected: '1..6' | |
| # Looks like you failed 12 tests of 12. | |
| t/warnings_exist.t .. | |
| Dubious, test returned 12 (wstat 3072, 0xc00) | |
| Failed 12/12 subtests | |
| Can't locate Sub/Uplevel.pm in @INC (@INC contains: ../blib/lib /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/lib /home/ray/.cpanm/work/1306173667.22117/Test-Warn-0.23/blib/arch ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /etc/perl /usr/local/lib/perl/5.10.0 /usr/local/share/perl/5.10.0 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at ../blib/lib/Test/Warn.pm line 247. | |
| BEGIN failed--compilation aborted at ../blib/lib/Test/Warn.pm line 247. | |
| Compilation failed in require at t/warnings_like.t line 34. | |
| BEGIN failed--compilation aborted at t/warnings_like.t line 34. | |
| # Looks like your test exited with 2 before it could output anything. | |
| t/warnings_like.t ... | |
| Dubious, test returned 2 (wstat 512, 0x200) | |
| Failed 448/448 subtests | |
| Test Summary Report | |
| ------------------- | |
| t/1.t (Wstat: 512 Tests: 0 Failed: 0) | |
| Non-zero exit status: 2 | |
| Parse errors: Bad plan. You planned 1 tests but ran 0. | |
| t/carped.t (Wstat: 512 Tests: 0 Failed: 0) | |
| Non-zero exit status: 2 | |
| Parse errors: Bad plan. You planned 6 tests but ran 0. | |
| t/warning_is.t (Wstat: 512 Tests: 0 Failed: 0) | |
| Non-zero exit status: 2 | |
| Parse errors: Bad plan. You planned 48 tests but ran 0. | |
| t/warning_like.t (Wstat: 512 Tests: 0 Failed: 0) | |
| Non-zero exit status: 2 | |
| Parse errors: Bad plan. You planned 96 tests but ran 0. | |
| t/warnings_are.t (Wstat: 512 Tests: 0 Failed: 0) | |
| Non-zero exit status: 2 | |
| Parse errors: Bad plan. You planned 224 tests but ran 0. | |
| t/warnings_exist.t (Wstat: 3072 Tests: 12 Failed: 12) | |
| Failed tests: 1-12 | |
| Non-zero exit status: 12 | |
| t/warnings_like.t (Wstat: 512 Tests: 0 Failed: 0) | |
| Non-zero exit status: 2 | |
| Parse errors: Bad plan. You planned 448 tests but ran 0. | |
| Files=8, Tests=12, 1 wallclock secs ( 0.04 usr 0.02 sys + 0.20 cusr 0.02 csys = 0.28 CPU) | |
| Result: FAIL | |
| Failed 7/8 test programs. 12/12 subtests failed. | |
| make: *** [test_dynamic] Error 2 | |
| -> FAIL Installing Test::Warn failed. See /home/ray/.cpanm/build.log for details. | |
| Already tried Test::Exception. Skipping. | |
| -> FAIL Bailing out the installation for SQL-Abstract-1.72. Retry with --prompt or --force. | |
| Searching Data::Page on cpanmetadb ... | |
| --> Working on Data::Page | |
| Fetching http://search.cpan.org/CPAN/authors/id/L/LB/LBROCARD/Data-Page-2.02.tar.gz | |
| -> OK | |
| Unpacking Data-Page-2.02.tar.gz | |
| Entering Data-Page-2.02 | |
| Checking configure dependencies from META.yml | |
| Checking if you have Module::Build 0.35 ... Yes (0.3800) | |
| Configuring Data-Page-2.02 | |
| Running Build.PL | |
| Checking prerequisites... | |
| requires: | |
| ! Class::Accessor::Chained::Fast is not installed | |
| ! Test::Exception is not installed | |
| ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions | |
| of the modules indicated above before proceeding with this installation | |
| Created MYMETA.yml and MYMETA.json | |
| Creating new 'Build' script for 'Data-Page' version '2.02' | |
| -> OK | |
| Checking dependencies from MYMETA.yml ... | |
| Checking if you have Test::More 0 ... Yes (0.98) | |
| Checking if you have Class::Accessor::Chained::Fast 0 ... No | |
| Checking if you have Test::Exception 0 ... No | |
| ==> Found dependencies: Class::Accessor::Chained::Fast, Test::Exception | |
| Searching Class::Accessor::Chained::Fast on cpanmetadb ... | |
| --> Working on Class::Accessor::Chained::Fast | |
| Fetching http://search.cpan.org/CPAN/authors/id/R/RC/RCLAMP/Class-Accessor-Chained-0.01.tar.gz | |
| -> OK | |
| Unpacking Class-Accessor-Chained-0.01.tar.gz | |
| Entering Class-Accessor-Chained-0.01 | |
| Checking configure dependencies from META.yml | |
| Configuring Class-Accessor-Chained-0.01 | |
| Running Build.PL | |
| Created MYMETA.yml and MYMETA.json | |
| Creating new 'Build' script for 'Class-Accessor-Chained' version '0.01' | |
| -> OK | |
| Checking dependencies from MYMETA.yml ... | |
| Checking if you have Class::Accessor 0 ... Yes (0.34) | |
| Checking if you have Test::More 0 ... Yes (0.98) | |
| Building and testing Class-Accessor-Chained-0.01 | |
| Building Class-Accessor-Chained | |
| t/00compile.t .. ok | |
| t/chained.t .... ok | |
| All tests successful. | |
| Files=2, Tests=8, 0 wallclock secs ( 0.03 usr 0.01 sys + 0.07 cusr 0.00 csys = 0.11 CPU) | |
| Result: PASS | |
| Building Class-Accessor-Chained | |
| !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! | |
| ERROR: Can't create '/usr/local/man/man3' | |
| Do not have write permissions on '/usr/local/man/man3' | |
| !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! | |
| at /home/ray/cxgn/local-lib/lib/perl5/Module/Build/Base.pm line 3569 | |
| -> FAIL Installing Class::Accessor::Chained::Fast failed. See /home/ray/.cpanm/build.log for details. | |
| Already tried Test::Exception. Skipping. | |
| -> FAIL Bailing out the installation for Data-Page-2.02. Retry with --prompt or --force. | |
| Searching Class::C3::Componentised on cpanmetadb ... | |
| --> Working on Class::C3::Componentised | |
| Fetching http://search.cpan.org/CPAN/authors/id/R/RI/RIBASUSHI/Class-C3-Componentised-1.0009.tar.gz | |
| -> OK | |
| Unpacking Class-C3-Componentised-1.0009.tar.gz | |
| Entering Class-C3-Componentised-1.0009 | |
| Checking configure dependencies from META.yml | |
| Checking if you have ExtUtils::MakeMaker 6.42 ... Yes (6.56) | |
| Configuring Class-C3-Componentised-1.0009 | |
| Running Makefile.PL | |
| Warning: prerequisite Test::Exception 0 not found. | |
| Checking if your kit is complete... | |
| Looks good | |
| Writing Makefile for Class::C3::Componentised | |
| Writing MYMETA.yml | |
| -> OK | |
| Checking dependencies from MYMETA.yml ... | |
| Finding PREREQ from Makefile ... | |
| Checking if you have Test::Exception 0 ... No | |
| Checking if you have Class::Inspector 0 ... Yes (1.25) | |
| Checking if you have MRO::Compat 0 ... Yes (0.11) | |
| Checking if you have Class::C3 0.20 ... Yes (0.23) | |
| Checking if you have Carp 0 ... Yes (1.08) | |
| Checking if you have ExtUtils::MakeMaker 6.42 ... Yes (6.56) | |
| Checking if you have ExtUtils::MakeMaker 6.42 ... Yes (6.56) | |
| Checking if you have Class::Inspector 0 ... Yes (1.25) | |
| Checking if you have Class::C3 0.20 ... Yes (0.23) | |
| Checking if you have MRO::Compat 0 ... Yes (0.11) | |
| Checking if you have Carp 0 ... Yes (1.08) | |
| ==> Found dependencies: Test::Exception | |
| Already tried Test::Exception. Skipping. | |
| Building and testing Class-C3-Componentised-1.0009 | |
| cp lib/Class/C3/Componentised.pm blib/lib/Class/C3/Componentised.pm | |
| Manifying blib/man3/Class::C3::Componentised.3pm | |
| PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'inc', 'blib/lib', 'blib/arch')" t/*.t | |
| # Testing Class::C3::Componentised 1.0009, Perl 5.010000, /usr/bin/perl | |
| t/00-load.t ........................ ok | |
| Can't locate Test/Exception.pm in @INC (@INC contains: /home/ray/.cpanm/work/1306173667.22117/Class-C3-Componentised-1.0009/inc /home/ray/.cpanm/work/1306173667.22117/Class-C3-Componentised-1.0009/blib/lib /home/ray/.cpanm/work/1306173667.22117/Class-C3-Componentised-1.0009/blib/arch ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /etc/perl /usr/local/lib/perl/5.10.0 /usr/local/share/perl/5.10.0 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at t/01-basic.t line 6. | |
| BEGIN failed--compilation aborted at t/01-basic.t line 6. | |
| t/01-basic.t ....................... | |
| Dubious, test returned 2 (wstat 512, 0x200) | |
| No subtests run | |
| Can't locate Test/Exception.pm in @INC (@INC contains: /home/ray/.cpanm/work/1306173667.22117/Class-C3-Componentised-1.0009/inc /home/ray/.cpanm/work/1306173667.22117/Class-C3-Componentised-1.0009/blib/lib /home/ray/.cpanm/work/1306173667.22117/Class-C3-Componentised-1.0009/blib/arch ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /etc/perl /usr/local/lib/perl/5.10.0 /usr/local/share/perl/5.10.0 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at t/02-explicit.t line 6. | |
| BEGIN failed--compilation aborted at t/02-explicit.t line 6. | |
| t/02-explicit.t .................... | |
| Dubious, test returned 2 (wstat 512, 0x200) | |
| No subtests run | |
| t/03-unstable_dollar_underscore.t .. ok | |
| t/pod-coverage.t ................... skipped: Test::Pod::Coverage 1.04 required for testing POD coverage | |
| t/pod.t ............................ skipped: Test::Pod 1.14 required for testing POD | |
| Test Summary Report | |
| ------------------- | |
| t/01-basic.t (Wstat: 512 Tests: 0 Failed: 0) | |
| Non-zero exit status: 2 | |
| Parse errors: No plan found in TAP output | |
| t/02-explicit.t (Wstat: 512 Tests: 0 Failed: 0) | |
| Non-zero exit status: 2 | |
| Parse errors: No plan found in TAP output | |
| Files=6, Tests=2, 1 wallclock secs ( 0.03 usr 0.00 sys + 0.19 cusr 0.01 csys = 0.23 CPU) | |
| Result: FAIL | |
| Failed 2/6 test programs. 0/2 subtests failed. | |
| make: *** [test_dynamic] Error 255 | |
| -> FAIL Installing Class::C3::Componentised failed. See /home/ray/.cpanm/build.log for details. | |
| Searching Path::Class on cpanmetadb ... | |
| --> Working on Path::Class | |
| Fetching http://search.cpan.org/CPAN/authors/id/K/KW/KWILLIAMS/Path-Class-0.23.tar.gz | |
| -> OK | |
| Unpacking Path-Class-0.23.tar.gz | |
| Entering Path-Class-0.23 | |
| Checking configure dependencies from META.yml | |
| Checking if you have ExtUtils::MakeMaker 6.31 ... Yes (6.56) | |
| Configuring Path-Class-0.23 | |
| Running Build.PL | |
| Created MYMETA.yml and MYMETA.json | |
| Creating new 'Build' script for 'Path-Class' version '0.23' | |
| -> OK | |
| Checking dependencies from MYMETA.yml ... | |
| Checking if you have IO::File 0 ... Yes (1.14) | |
| Checking if you have File::Spec 0.87 ... Yes (3.33) | |
| Checking if you have overload 0 ... Yes (1.06) | |
| Checking if you have File::Path 0 ... Yes (2.08) | |
| Checking if you have File::Spec::Mac 1.3 ... Yes (3.33) | |
| Checking if you have IO::Dir 0 ... Yes (1.06) | |
| Checking if you have Cwd 0 ... Yes (3.33) | |
| Checking if you have File::stat 0 ... Yes (1.00) | |
| Checking if you have Test::More 0 ... Yes (0.98) | |
| Checking if you have File::Temp 0 ... Yes (0.22) | |
| Building and testing Path-Class-0.23 | |
| Building Path-Class | |
| t/01-basic.t ....... ok | |
| t/02-foreign.t ..... ok | |
| t/03-filesystem.t .. ok | |
| t/04-subclass.t .... ok | |
| All tests successful. | |
| Files=4, Tests=180, 1 wallclock secs ( 0.04 usr 0.01 sys + 0.30 cusr 0.04 csys = 0.39 CPU) | |
| Result: PASS | |
| Building Path-Class | |
| !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! | |
| ERROR: Can't create '/usr/local/man/man3' | |
| Do not have write permissions on '/usr/local/man/man3' | |
| !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! | |
| at /home/ray/cxgn/local-lib/lib/perl5/Module/Build/Base.pm line 3569 | |
| -> FAIL Installing Path::Class failed. See /home/ray/.cpanm/build.log for details. | |
| Already tried Test::Exception. Skipping. | |
| Already tried Test::Warn. Skipping. | |
| -> FAIL Bailing out the installation for DBIx-Class-0.08192. Retry with --prompt or --force. | |
| Searching DBIx::Class::ResultSet on cpanmetadb ... | |
| Already tried DBIx-Class-0.08192. Skipping. | |
| Searching Bio::Root::Version on cpanmetadb ... | |
| --> Working on Bio::Root::Version | |
| Fetching http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz | |
| -> OK | |
| Unpacking BioPerl-1.6.901.tar.gz | |
| Entering BioPerl-1.6.901 | |
| Checking configure dependencies from META.yml | |
| Checking if you have Module::Build 0.38 ... Yes (0.3800) | |
| Configuring BioPerl-1.006901 | |
| Running Build.PL | |
| Checking prerequisites... | |
| recommends: | |
| * Algorithm::Munkres is not installed | |
| * Array::Compare is not installed | |
| * Convert::Binary::C is not installed | |
| * GraphViz is not installed | |
| * HTML::HeadParser (2.22) is installed, but we prefer to have 3 | |
| * Math::Random is not installed | |
| * PostScript::TextBlock is not installed | |
| * SVG is not installed | |
| * SVG::Graph is not installed | |
| * Set::Scalar is not installed | |
| * Sort::Naturally is not installed | |
| * Spreadsheet::ParseExcel is not installed | |
| * XML::DOM::XPath is not installed | |
| * XML::SAX::Writer is not installed | |
| Checking optional features... | |
| EntrezGene............disabled | |
| requires: | |
| ! Bio::ASN1::EntrezGene is not installed | |
| Pg Tests..............disabled | |
| requires: | |
| ! DBD::Pg is not installed | |
| ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions | |
| of the modules indicated above before proceeding with this installation | |
| ############################# WARNING ############################# | |
| Bio::ASN1::EntrezGene not found. This is an *optional* module; | |
| however, because it has a circular dependency with BioPerl we do not | |
| include it on our list of recommended modules. | |
| If you require EntrezGene functionality, you can install | |
| Bio::ASN1::EntrezGene after BioPerl has finished installing. | |
| ############################# WARNING ############################# | |
| Do you want to run the Bio::DB::GFF or Bio::DB::SeqFeature::Store live database tests? y/n [n] - will not run the BioDBGFF or BioDBSeqFeature live database tests | |
| Install [a]ll BioPerl scripts, [n]one, or choose groups [i]nteractively? [a] - will install all scripts | |
| Do you want to run tests that require connection to servers across the internet | |
| (likely to cause some failures)? y/n [n] - will not run internet-requiring tests | |
| Created MYMETA.yml and MYMETA.json | |
| Creating new 'Build' script for 'BioPerl' version '1.006901' | |
| -> OK | |
| Checking dependencies from MYMETA.yml ... | |
| Checking if you have Scalar::Util 0 ... Yes (1.19) | |
| Checking if you have IO::String 0 ... Yes (1.08) | |
| Checking if you have Data::Stag 0.11 ... Yes (0.11) | |
| Checking if you have DB_File 0 ... Yes (1.816_1) | |
| Checking if you have ExtUtils::Manifest 1.52 ... Yes (1.58) | |
| Checking if you have Test::More 0 ... Yes (0.98) | |
| Checking if you have Test::Harness 2.62 ... Yes (3.23) | |
| Checking if you have CPAN 1.81 ... Yes (1.9205) | |
| Checking if you have Module::Build 0.2805 ... Yes (0.3800) | |
| Building and testing BioPerl-1.006901 | |
| Building BioPerl | |
| t/Align/AlignStats.t ......................... ok | |
| t/Align/AlignUtil.t .......................... ok | |
| t/Align/Graphics.t ........................... ok | |
| t/Align/SimpleAlign.t ........................ ok | |
| t/Align/TreeBuild.t .......................... ok | |
| t/Align/Utilities.t .......................... ok | |
| t/AlignIO/AlignIO.t .......................... ok | |
| t/AlignIO/arp.t .............................. ok | |
| t/AlignIO/bl2seq.t ........................... ok | |
| t/AlignIO/clustalw.t ......................... ok | |
| t/AlignIO/emboss.t ........................... ok | |
| t/AlignIO/fasta.t ............................ ok | |
| t/AlignIO/largemultifasta.t .................. ok | |
| t/AlignIO/maf.t .............................. ok | |
| t/AlignIO/mase.t ............................. ok | |
| t/AlignIO/mega.t ............................. ok | |
| t/AlignIO/meme.t ............................. ok | |
| t/AlignIO/metafasta.t ........................ ok | |
| t/AlignIO/msf.t .............................. ok | |
| t/AlignIO/nexml.t ............................ skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed | |
| t/AlignIO/nexus.t ............................ ok | |
| t/AlignIO/pfam.t ............................. ok | |
| t/AlignIO/phylip.t ........................... ok | |
| t/AlignIO/po.t ............................... ok | |
| t/AlignIO/prodom.t ........................... ok | |
| t/AlignIO/psi.t .............................. ok | |
| t/AlignIO/selex.t ............................ ok | |
| t/AlignIO/stockholm.t ........................ ok | |
| t/AlignIO/xmfa.t ............................. ok | |
| t/Alphabet.t ................................. ok | |
| t/Annotation/Annotation.t .................... ok | |
| t/Annotation/AnnotationAdaptor.t ............. ok | |
| t/Assembly/ContigSpectrum.t .................. ok | |
| t/Assembly/IO/bowtie.t ....................... skipped: The optional module Bio::Tools::Run::Samtools (or dependencies thereof) was not installed | |
| t/Assembly/IO/sam.t .......................... skipped: The optional module Bio::DB::Sam (or dependencies thereof) was not installed | |
| --------------------- WARNING --------------------- | |
| MSG: Setting end to equal start[1] | |
| --------------------------------------------------- | |
| --------------------- WARNING --------------------- | |
| MSG: Setting end to equal start[1] | |
| --------------------------------------------------- | |
| --------------------- WARNING --------------------- | |
| MSG: Setting end to equal start[1] | |
| --------------------------------------------------- | |
| --------------------- WARNING --------------------- | |
| MSG: Setting end to equal start[1] | |
| --------------------------------------------------- | |
| --------------------- WARNING --------------------- | |
| MSG: Setting end to equal start[1] | |
| --------------------------------------------------- | |
| t/Assembly/core.t ............................ ok | |
| t/Biblio/Biblio.t ............................ ok | |
| t/Biblio/References.t ........................ ok | |
| t/Biblio/biofetch.t .......................... skipped: Network tests have not been requested | |
| t/Biblio/eutils.t ............................ skipped: Network tests have not been requested | |
| t/ClusterIO/ClusterIO.t ...................... ok | |
| t/ClusterIO/SequenceFamily.t ................. ok | |
| t/ClusterIO/unigene.t ........................ ok | |
| t/Coordinate/CoordinateBoundaryTest.t ........ ok | |
| t/Coordinate/CoordinateGraph.t ............... ok | |
| t/Coordinate/CoordinateMapper.t .............. ok | |
| t/Coordinate/GeneCoordinateMapper.t .......... ok | |
| t/Draw/Pictogram.t ........................... skipped: The optional module SVG (or dependencies thereof) was not installed | |
| t/LiveSeq/Chain.t ............................ ok | |
| t/LiveSeq/LiveSeq.t .......................... ok | |
| t/LiveSeq/Mutation.t ......................... ok | |
| t/LiveSeq/Mutator.t .......................... ok | |
| You are loading a Bio::DB::GFF database with GFF3 formatted data. | |
| While this will likely work fine, the Bio::DB::GFF schema does not | |
| always faithfully capture the complexity represented in GFF3 files. | |
| Unless you have a specific reason for using Bio::DB::GFF, we suggest | |
| that you use a Bio::DB::SeqFeature::Store database and its corresponding | |
| loader, bp_seqfeature_load.pl. | |
| t/LocalDB/BioDBGFF.t ......................... ok | |
| t/LocalDB/DBFasta.t .......................... ok | |
| t/LocalDB/DBQual.t ........................... ok | |
| t/LocalDB/Flat.t ............................. ok | |
| t/LocalDB/Index/Blast.t ...................... ok | |
| t/LocalDB/Index/BlastTable.t ................. ok | |
| t/LocalDB/Index/Index.t ...................... ok | |
| t/LocalDB/Registry.t ......................... ok | |
| t/LocalDB/SeqFeature.t ....................... ok | |
| t/LocalDB/transfac_pro.t ..................... ok | |
| t/Map/Cyto.t ................................. ok | |
| t/Map/Linkage.t .............................. ok | |
| t/Map/Map.t .................................. ok | |
| t/Map/MapIO.t ................................ ok | |
| t/Map/MicrosatelliteMarker.t ................. ok | |
| t/Map/Physical.t ............................. ok | |
| t/Matrix/IO/masta.t .......................... ok | |
| t/Matrix/IO/psm.t ............................ ok | |
| t/Matrix/InstanceSite.t ...................... ok | |
| t/Matrix/Matrix.t ............................ ok | |
| t/Matrix/ProtMatrix.t ........................ ok | |
| t/Matrix/ProtPsm.t ........................... ok | |
| t/Matrix/SiteMatrix.t ........................ ok | |
| t/Ontology/GOterm.t .......................... ok | |
| t/Ontology/GraphAdaptor.t .................... ok | |
| t/Ontology/IO/go.t ........................... ok | |
| t/Ontology/IO/interpro.t ..................... ok | |
| t/Ontology/IO/obo.t .......................... ok | |
| t/Ontology/Ontology.t ........................ ok | |
| t/Ontology/OntologyEngine.t .................. ok | |
| t/Ontology/OntologyStore.t ................... skipped: Network tests have not been requested | |
| t/Ontology/Relationship.t .................... ok | |
| t/Ontology/RelationshipType.t ................ ok | |
| t/Ontology/Term.t ............................ ok | |
| t/Perl.t ..................................... ok | |
| t/Phenotype/Correlate.t ...................... ok | |
| t/Phenotype/MeSH.t ........................... ok | |
| t/Phenotype/Measure.t ........................ ok | |
| t/Phenotype/MiniMIMentry.t ................... ok | |
| t/Phenotype/OMIMentry.t ...................... ok | |
| t/Phenotype/OMIMentryAllelicVariant.t ........ ok | |
| t/Phenotype/OMIMparser.t ..................... ok | |
| t/Phenotype/Phenotype.t ...................... ok | |
| t/PodSyntax.t ................................ skipped: Test::Pod 1.00 required for testing POD | |
| t/PopGen/Coalescent.t ........................ ok | |
| t/PopGen/HtSNP.t ............................. ok | |
| t/PopGen/MK.t ................................ ok | |
| t/PopGen/PopGen.t ............................ ok | |
| t/PopGen/PopGenSims.t ........................ ok | |
| t/PopGen/TagHaplotype.t ...................... ok | |
| t/RemoteDB/BioFetch.t ........................ skipped: Network tests have not been requested | |
| t/RemoteDB/CUTG.t ............................ ok | |
| t/RemoteDB/EMBL.t ............................ skipped: Network tests have not been requested | |
| t/RemoteDB/EUtilities.t ...................... skipped: Valid email not provided; required for tests | |
| t/RemoteDB/EntrezGene.t ...................... skipped: The optional module Bio::ASN1::EntrezGene (or dependencies thereof) was not installed | |
| t/RemoteDB/GenBank.t ......................... skipped: Network tests have not been requested | |
| t/RemoteDB/GenPept.t ......................... skipped: Network tests have not been requested | |
| t/RemoteDB/HIV/HIV.t ......................... ok | |
| t/RemoteDB/HIV/HIVAnnotProcessor.t ........... ok | |
| Use of uninitialized value $rest[0] in join or string at (eval 68) line 15. | |
| t/RemoteDB/HIV/HIVQuery.t .................... ok | |
| t/RemoteDB/HIV/HIVQueryHelper.t .............. ok | |
| t/RemoteDB/MeSH.t ............................ skipped: Network tests have not been requested | |
| t/RemoteDB/Query/GenBank.t ................... skipped: Network tests have not been requested | |
| t/RemoteDB/RefSeq.t .......................... ok | |
| t/RemoteDB/SeqHound.t ........................ skipped: Network tests have not been requested | |
| t/RemoteDB/SeqRead_fail.t .................... skipped: Network tests have not been requested | |
| t/RemoteDB/SeqVersion.t ...................... ok | |
| t/RemoteDB/SwissProt.t ....................... skipped: Network tests have not been requested | |
| t/RemoteDB/Taxonomy.t ........................ ok | |
| t/Restriction/Analysis-refac.t ............... ok | |
| t/Restriction/Analysis.t ..................... ok | |
| t/Restriction/Gel.t .......................... ok | |
| t/Restriction/IO.t ........................... ok | |
| t/Root/Exception.t ........................... ok | |
| t/Root/HTTPget.t ............................. skipped: Network tests have not been requested | |
| t/Root/RootI.t ............................... ok | |
| t/Root/RootIO.t .............................. ok | |
| t/Root/Storable.t ............................ ok | |
| t/Root/Tempfile.t ............................ ok | |
| t/Root/Utilities.t ........................... ok | |
| t/SearchDist.t ............................... skipped: The optional module Bio::Ext::Align (or dependencies thereof) was not installed | |
| t/SearchIO/CigarString.t ..................... ok | |
| t/SearchIO/SearchIO.t ........................ ok | |
| t/SearchIO/SimilarityPair.t .................. ok | |
| t/SearchIO/Tiling.t .......................... ok | |
| t/SearchIO/Writer/GbrowseGFF.t ............... ok | |
| t/SearchIO/Writer/HSPTableWriter.t ........... ok | |
| t/SearchIO/Writer/HTMLWriter.t ............... ok | |
| t/SearchIO/Writer/HitTableWriter.t ........... ok | |
| t/SearchIO/Writer/TextWriter.t ............... ok | |
| t/SearchIO/axt.t ............................. ok | |
| t/SearchIO/blast.t ........................... ok | |
| t/SearchIO/blast_pull.t ...................... ok | |
| t/SearchIO/blasttable.t ...................... ok | |
| t/SearchIO/blastxml.t ........................ ok | |
| t/SearchIO/cross_match.t ..................... ok | |
| t/SearchIO/erpin.t ........................... ok | |
| t/SearchIO/exonerate.t ....................... ok | |
| t/SearchIO/fasta.t ........................... ok | |
| t/SearchIO/gmap_f9.t ......................... ok | |
| t/SearchIO/hmmer.t ........................... ok | |
| t/SearchIO/hmmer_pull.t ...................... ok | |
| t/SearchIO/infernal.t ........................ ok | |
| t/SearchIO/megablast.t ....................... ok | |
| t/SearchIO/psl.t ............................. ok | |
| t/SearchIO/rnamotif.t ........................ ok | |
| t/SearchIO/sim4.t ............................ ok | |
| t/SearchIO/waba.t ............................ ok | |
| t/SearchIO/wise.t ............................ ok | |
| t/Seq/DBLink.t ............................... ok | |
| t/Seq/EncodedSeq.t ........................... ok | |
| t/Seq/LargeLocatableSeq.t .................... ok | |
| t/Seq/LargePSeq.t ............................ ok | |
| t/Seq/LocatableSeq.t ......................... ok | |
| t/Seq/MetaSeq.t .............................. ok | |
| t/Seq/PrimaryQual.t .......................... ok | |
| t/Seq/PrimarySeq.t ........................... ok | |
| t/Seq/PrimedSeq.t ............................ ok | |
| t/Seq/Quality.t .............................. ok | |
| t/Seq/Seq.t .................................. ok | |
| t/Seq/WithQuality.t .......................... ok | |
| t/SeqEvolution.t ............................. ok | |
| t/SeqFeature/Clone.t ......................... ok | |
| t/SeqFeature/FeatureIO.t ..................... ok | |
| t/SeqFeature/Location.t ...................... ok | |
| t/SeqFeature/LocationFactory.t ............... ok | |
| t/SeqFeature/Primer.t ........................ ok | |
| t/SeqFeature/Range.t ......................... ok | |
| t/SeqFeature/RangeI.t ........................ ok | |
| t/SeqFeature/SeqAnalysisParser.t ............. ok | |
| t/SeqFeature/SeqFeatAnnotated.t .............. skipped: Network tests have not been requested | |
| t/SeqFeature/SeqFeatCollection.t ............. ok | |
| t/SeqFeature/SeqFeature.t .................... ok | |
| t/SeqFeature/SeqFeaturePrimer.t .............. ok | |
| t/SeqFeature/Unflattener.t ................... ok | |
| t/SeqFeature/Unflattener2.t .................. ok | |
| t/SeqIO/Handler.t ............................ ok | |
| t/SeqIO/MultiFile.t .......................... ok | |
| t/SeqIO/Multiple_fasta.t ..................... ok | |
| t/SeqIO/SeqBuilder.t ......................... ok | |
| t/SeqIO/SeqIO.t .............................. ok | |
| t/SeqIO/Splicedseq.t ......................... ok | |
| t/SeqIO/abi.t ................................ skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed | |
| t/SeqIO/ace.t ................................ ok | |
| t/SeqIO/agave.t .............................. ok | |
| t/SeqIO/alf.t ................................ skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed | |
| t/SeqIO/asciitree.t .......................... ok | |
| t/SeqIO/bsml.t ............................... ok | |
| t/SeqIO/bsml_sax.t ........................... skipped: The optional module XML::SAX::Writer (or dependencies thereof) was not installed | |
| t/SeqIO/chadoxml.t ........................... ok | |
| t/SeqIO/chaos.t .............................. ok | |
| t/SeqIO/chaosxml.t ........................... ok | |
| t/SeqIO/ctf.t ................................ skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed | |
| t/SeqIO/embl.t ............................... ok | |
| t/SeqIO/entrezgene.t ......................... skipped: The optional module Bio::ASN1::EntrezGene (or dependencies thereof) was not installed | |
| t/SeqIO/excel.t .............................. skipped: The optional module Spreadsheet::ParseExcel (or dependencies thereof) was not installed | |
| t/SeqIO/exp.t ................................ skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed | |
| t/SeqIO/fasta.t .............................. ok | |
| t/SeqIO/fastq.t .............................. ok | |
| t/SeqIO/flybase_chadoxml.t ................... ok | |
| t/SeqIO/game.t ............................... ok | |
| t/SeqIO/gbxml.t .............................. ok | |
| t/SeqIO/gcg.t ................................ ok | |
| t/SeqIO/genbank.t ............................ ok | |
| t/SeqIO/interpro.t ........................... skipped: The optional module XML::DOM::XPath (or dependencies thereof) was not installed | |
| t/SeqIO/kegg.t ............................... ok | |
| t/SeqIO/largefasta.t ......................... ok | |
| t/SeqIO/lasergene.t .......................... ok | |
| t/SeqIO/locuslink.t .......................... ok | |
| t/SeqIO/mbsout.t ............................. ok | |
| t/SeqIO/metafasta.t .......................... ok | |
| t/SeqIO/msout.t .............................. ok | |
| t/SeqIO/nexml.t .............................. skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed | |
| t/SeqIO/phd.t ................................ ok | |
| t/SeqIO/pir.t ................................ ok | |
| t/SeqIO/pln.t ................................ skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed | |
| t/SeqIO/qual.t ............................... ok | |
| t/SeqIO/raw.t ................................ ok | |
| t/SeqIO/scf.t ................................ ok | |
| t/SeqIO/seqxml.t ............................. ok | |
| t/SeqIO/strider.t ............................ skipped: The optional module Convert::Binary::C (or dependencies thereof) was not installed | |
| t/SeqIO/swiss.t .............................. ok | |
| t/SeqIO/tab.t ................................ ok | |
| t/SeqIO/table.t .............................. ok | |
| t/SeqIO/tigr.t ............................... ok | |
| t/SeqIO/tigrxml.t ............................ skipped: The optional module XML::SAX::Writer (or dependencies thereof) was not installed | |
| t/SeqIO/tinyseq.t ............................ ok | |
| t/SeqIO/ztr.t ................................ skipped: The optional module Bio::SeqIO::staden::read (or dependencies thereof) was not installed | |
| t/SeqTools/Backtranslate.t ................... ok | |
| t/SeqTools/CodonTable.t ...................... ok | |
| t/SeqTools/ECnumber.t ........................ ok | |
| t/SeqTools/GuessSeqFormat.t .................. ok | |
| t/SeqTools/OddCodes.t ........................ ok | |
| t/SeqTools/SeqPattern.t ...................... ok | |
| t/SeqTools/SeqStats.t ........................ ok | |
| t/SeqTools/SeqUtils.t ........................ ok | |
| t/SeqTools/SeqWords.t ........................ ok | |
| t/Species.t .................................. ok | |
| t/Structure/IO.t ............................. ok | |
| t/Structure/Structure.t ...................... ok | |
| t/Symbol.t ................................... ok | |
| t/TaxonTree.t ................................ skipped: All tests are being skipped, probably because the module(s) being tested here are now deprecated | |
| t/Tools/Alignment/Consed.t ................... ok | |
| t/Tools/Analysis/DNA/ESEfinder.t ............. skipped: Network tests have not been requested | |
| t/Tools/Analysis/Protein/Domcut.t ............ skipped: Network tests have not been requested | |
| t/Tools/Analysis/Protein/ELM.t ............... skipped: Network tests have not been requested | |
| t/Tools/Analysis/Protein/GOR4.t .............. skipped: Network tests have not been requested | |
| t/Tools/Analysis/Protein/HNN.t ............... skipped: Network tests have not been requested | |
| t/Tools/Analysis/Protein/Mitoprot.t .......... skipped: Network tests have not been requested | |
| t/Tools/Analysis/Protein/NetPhos.t ........... skipped: Network tests have not been requested | |
| t/Tools/Analysis/Protein/Scansite.t .......... ok | |
| t/Tools/Analysis/Protein/Sopma.t ............. ok | |
| t/Tools/EMBOSS/Palindrome.t .................. ok | |
| t/Tools/EUtilities/EUtilParameters.t ......... ok | |
| t/Tools/EUtilities/egquery.t ................. ok | |
| t/Tools/EUtilities/einfo.t ................... ok | |
| t/Tools/EUtilities/elink_acheck.t ............ ok | |
| t/Tools/EUtilities/elink_lcheck.t ............ ok | |
| t/Tools/EUtilities/elink_llinks.t ............ ok | |
| t/Tools/EUtilities/elink_ncheck.t ............ ok | |
| t/Tools/EUtilities/elink_neighbor.t .......... ok | |
| t/Tools/EUtilities/elink_neighbor_history.t .. ok | |
| t/Tools/EUtilities/elink_scores.t ............ ok | |
| t/Tools/EUtilities/epost.t ................... ok | |
| t/Tools/EUtilities/esearch.t ................. ok | |
| t/Tools/EUtilities/espell.t .................. ok | |
| t/Tools/EUtilities/esummary.t ................ ok | |
| t/Tools/Est2Genome.t ......................... ok | |
| t/Tools/FootPrinter.t ........................ ok | |
| t/Tools/GFF.t ................................ ok | |
| t/Tools/Geneid.t ............................. ok | |
| t/Tools/Genewise.t ........................... ok | |
| t/Tools/Genomewise.t ......................... ok | |
| t/Tools/Genpred.t ............................ ok | |
| t/Tools/GuessSeqFormat.t ..................... ok | |
| t/Tools/Hmmer.t .............................. ok | |
| t/Tools/IUPAC.t .............................. ok | |
| t/Tools/Lucy.t ............................... ok | |
| t/Tools/Match.t .............................. ok | |
| t/Tools/Phylo/Gerp.t ......................... ok | |
| t/Tools/Phylo/Molphy.t ....................... ok | |
| t/Tools/Phylo/PAML.t ......................... ok | |
| t/Tools/Phylo/Phylip/ProtDist.t .............. ok | |
| t/Tools/Primer3.t ............................ ok | |
| t/Tools/Promoterwise.t ....................... ok | |
| t/Tools/Pseudowise.t ......................... ok | |
| t/Tools/QRNA.t ............................... ok | |
| t/Tools/RandDistFunctions.t .................. ok | |
| t/Tools/RepeatMasker.t ....................... ok | |
| t/Tools/Run/RemoteBlast.t .................... skipped: Network tests have not been requested | |
| t/Tools/Run/RemoteBlast_rpsblast.t ........... skipped: Network tests have not been requested | |
| t/Tools/Run/StandAloneBlast.t ................ ok | |
| t/Tools/Run/WBCommandExts.t .................. skipped: The optional module Bio::Tools::Run::WrapperBase::CommandExts (or dependencies thereof) was not installed | |
| t/Tools/Run/WrapperBase.t .................... ok | |
| t/Tools/Seg.t ................................ ok | |
| t/Tools/SiRNA.t .............................. ok | |
| t/Tools/Sigcleave.t .......................... ok | |
| t/Tools/Signalp.t ............................ ok | |
| t/Tools/Signalp/ExtendedSignalp.t ............ ok | |
| t/Tools/Sim4.t ............................... ok | |
| t/Tools/Spidey/Spidey.t ...................... ok | |
| t/Tools/TandemRepeatsFinder.t ................ ok | |
| t/Tools/TargetP.t ............................ ok | |
| t/Tools/Tmhmm.t .............................. ok | |
| t/Tools/ePCR.t ............................... ok | |
| t/Tools/pICalculator.t ....................... ok | |
| t/Tools/rnamotif.t ........................... skipped: All tests are being skipped, probably because the module(s) being tested here are now deprecated | |
| t/Tools/tRNAscanSE.t ......................... ok | |
| t/Tree/Compatible.t .......................... skipped: The optional module Set::Scalar (or dependencies thereof) was not installed | |
| t/Tree/Node.t ................................ ok | |
| t/Tree/PhyloNetwork/Factory.t ................ skipped: The optional module Bio::PhyloNetwork (or dependencies thereof) was not installed | |
| t/Tree/PhyloNetwork/GraphViz.t ............... skipped: The optional module Bio::PhyloNetwork (or dependencies thereof) was not installed | |
| t/Tree/PhyloNetwork/MuVector.t ............... ok | |
| t/Tree/PhyloNetwork/PhyloNetwork.t ........... skipped: The optional module Algorithm::Munkres (or dependencies thereof) was not installed | |
| t/Tree/PhyloNetwork/RandomFactory.t .......... skipped: The optional module Bio::PhyloNetwork (or dependencies thereof) was not installed | |
| t/Tree/PhyloNetwork/TreeFactory.t ............ skipped: The optional module Bio::PhyloNetwork (or dependencies thereof) was not installed | |
| t/Tree/RandomTreeFactory.t ................... ok | |
| t/Tree/Tree.t ................................ ok | |
| t/Tree/TreeIO.t .............................. ok | |
| t/Tree/TreeIO/lintree.t ...................... ok | |
| t/Tree/TreeIO/newick.t ....................... ok | |
| t/Tree/TreeIO/nexml.t ........................ skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed | |
| t/Tree/TreeIO/nexus.t ........................ ok | |
| t/Tree/TreeIO/nhx.t .......................... ok | |
| t/Tree/TreeIO/phyloxml.t ..................... ok | |
| t/Tree/TreeIO/svggraph.t ..................... ok | |
| t/Tree/TreeIO/tabtree.t ...................... ok | |
| t/Tree/TreeStatistics.t ...................... ok | |
| t/Variation/AAChange.t ....................... ok | |
| t/Variation/AAReverseMutate.t ................ ok | |
| t/Variation/Allele.t ......................... ok | |
| t/Variation/DNAMutation.t .................... ok | |
| t/Variation/RNAChange.t ...................... ok | |
| t/Variation/SNP.t ............................ ok | |
| t/Variation/SeqDiff.t ........................ ok | |
| t/Variation/Variation_IO.t ................... ok | |
| t/nexml.t .................................... skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed | |
| All tests successful. | |
| Files=349, Tests=19935, 167 wallclock secs ( 3.87 usr 0.64 sys + 148.35 cusr 7.84 csys = 160.70 CPU) | |
| Result: PASS | |
| Building BioPerl | |
| Reading skip patterns from 'INSTALL.SKIP'. | |
| !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! | |
| ERROR: Can't create '/usr/local/bin' | |
| Do not have write permissions on '/usr/local/bin' | |
| !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! | |
| at /home/ray/.cpanm/work/1306173667.22117/BioPerl-1.6.901/Bio/Root/Build.pm line 853 | |
| -> FAIL Installing Bio::Root::Version failed. See /home/ray/.cpanm/build.log for details. | |
| Searching DBIx::Class::Core on cpanmetadb ... | |
| Already tried DBIx-Class-0.08192. Skipping. | |
| Searching DBIx::Class::Tree::NestedSet on cpanmetadb ... | |
| --> Working on DBIx::Class::Tree::NestedSet | |
| Fetching http://search.cpan.org/CPAN/authors/id/I/IC/ICYDEE/DBIx-Class-Tree-NestedSet-0.07.tar.gz | |
| -> OK | |
| Unpacking DBIx-Class-Tree-NestedSet-0.07.tar.gz | |
| Entering DBIx-Class-Tree-NestedSet-0.07 | |
| Checking configure dependencies from META.yml | |
| Configuring DBIx-Class-Tree-NestedSet-0.07 | |
| Running Makefile.PL | |
| Warning: prerequisite DBICx::TestDatabase 0.01 not found. | |
| Warning: prerequisite DBIx::Class 0.08 not found. | |
| Checking if your kit is complete... | |
| Looks good | |
| Writing Makefile for DBIx::Class::Tree::NestedSet | |
| -> OK | |
| Finding PREREQ from Makefile ... | |
| Checking if you have namespace::autoclean 0 ... Yes (0.12) | |
| Checking if you have DBIx::Class 0.08 ... No | |
| Checking if you have Moose 0.54 ... Yes (2.0007) | |
| Checking if you have DBICx::TestDatabase 0.01 ... No | |
| ==> Found dependencies: DBIx::Class, DBICx::TestDatabase | |
| Searching DBIx::Class on cpanmetadb ... | |
| Already tried DBIx-Class-0.08192. Skipping. | |
| Searching DBICx::TestDatabase on cpanmetadb ... | |
| --> Working on DBICx::TestDatabase | |
| Fetching http://search.cpan.org/CPAN/authors/id/J/JR/JROCKWAY/DBICx-TestDatabase-0.04.tar.gz | |
| -> OK | |
| Unpacking DBICx-TestDatabase-0.04.tar.gz | |
| Entering DBICx-TestDatabase-0.04 | |
| Checking configure dependencies from META.yml | |
| Checking if you have ExtUtils::MakeMaker 6.42 ... Yes (6.56) | |
| Configuring DBICx-TestDatabase-0.04 | |
| Running Makefile.PL | |
| Cannot determine perl version info from lib/DBICx/TestDatabase.pm | |
| Warning: prerequisite DBIx::Class 0 not found. | |
| Warning: prerequisite SQL::Translator 0 not found. | |
| Checking if your kit is complete... | |
| Looks good | |
| Writing Makefile for DBICx::TestDatabase | |
| Writing MYMETA.yml | |
| -> OK | |
| Checking dependencies from MYMETA.yml ... | |
| Finding PREREQ from Makefile ... | |
| Checking if you have SQL::Translator 0 ... No | |
| Checking if you have DBD::SQLite 1.29 ... Yes (1.29) | |
| Checking if you have File::Temp 0 ... Yes (0.22) | |
| Checking if you have ok 0 ... Yes (0.02) | |
| Checking if you have Test::More 0 ... Yes (0.98) | |
| Checking if you have ExtUtils::MakeMaker 6.42 ... Yes (6.56) | |
| Checking if you have DBIx::Class 0 ... No | |
| Checking if you have ok 0 ... Yes (0.02) | |
| Checking if you have Test::More 0 ... Yes (0.98) | |
| Checking if you have DBD::SQLite 1.29 ... Yes (1.29) | |
| Checking if you have File::Temp 0 ... Yes (0.22) | |
| Checking if you have ExtUtils::MakeMaker 6.42 ... Yes (6.56) | |
| ==> Found dependencies: SQL::Translator, DBIx::Class | |
| Already tried SQL::Translator. Skipping. | |
| Already tried DBIx::Class. Skipping. | |
| Building and testing DBICx-TestDatabase-0.04 | |
| cp lib/DBICx/TestDatabase.pm blib/lib/DBICx/TestDatabase.pm | |
| cp lib/DBICx/TestDatabase/Subclass.pm blib/lib/DBICx/TestDatabase/Subclass.pm | |
| Manifying blib/man3/DBICx::TestDatabase.3pm | |
| Manifying blib/man3/DBICx::TestDatabase::Subclass.3pm | |
| PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'inc', 'blib/lib', 'blib/arch')" t/*.t | |
| t/00-load.t ....... ok | |
| Base class package "DBIx::Class::Schema" is empty. | |
| (Perhaps you need to 'use' the module which defines that package first, | |
| or make that module available in @INC (@INC contains: /home/ray/.cpanm/work/1306173667.22117/DBICx-TestDatabase-0.04/t/lib /home/ray/.cpanm/work/1306173667.22117/DBICx-TestDatabase-0.04/inc /home/ray/.cpanm/work/1306173667.22117/DBICx-TestDatabase-0.04/blib/lib /home/ray/.cpanm/work/1306173667.22117/DBICx-TestDatabase-0.04/blib/arch ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 /etc/perl /usr/local/lib/perl/5.10.0 /usr/local/share/perl/5.10.0 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .). | |
| at /home/ray/.cpanm/work/1306173667.22117/DBICx-TestDatabase-0.04/t/lib/MySchema.pm line 5 | |
| BEGIN failed--compilation aborted at /home/ray/.cpanm/work/1306173667.22117/DBICx-TestDatabase-0.04/t/lib/MySchema.pm line 5. | |
| Compilation failed in require at (eval 12) line 3. | |
| ...propagated at /usr/share/perl/5.10/base.pm line 92. | |
| BEGIN failed--compilation aborted at /home/ray/.cpanm/work/1306173667.22117/DBICx-TestDatabase-0.04/t/lib/TestDatabase.pm line 5. | |
| Compilation failed in require at t/subclass.t line 10. | |
| BEGIN failed--compilation aborted at t/subclass.t line 10. | |
| # Looks like your test exited with 2 before it could output anything. | |
| t/subclass.t ...... | |
| Dubious, test returned 2 (wstat 512, 0x200) | |
| Failed 6/6 subtests | |
| failed to require MySchema: Base class package "DBIx::Class::Schema" is empty. | |
| (Perhaps you need to 'use' the module which defines that package first, | |
| or make that module available in @INC (@INC contains: /home/ray/.cpanm/work/1306173667.22117/DBICx-TestDatabase-0.04/t/lib /home/ray/.cpanm/work/1306173667.22117/DBICx-TestDatabase-0.04/inc /home/ray/.cpanm/work/1306173667.22117/DBICx-TestDatabase-0.04/blib/lib /home/ray/.cpanm/work/1306173667.22117/DBICx-TestDatabase-0.04/blib/arch ~/cxgn/cxgn-corelibs/lib /home/ray/cxgn/sgn/lib/ /home/ray/cxgn/Phenome/lib /home/ray/cxgn/Cview/lib /home/ray/cxgn/cxgn-corelibs/lib /home/ray/cxgn/local-lib/lib/perl5/i486-linux-gnu-thread-multi /home/ray/cxgn/local-lib/lib/perl5 /etc/perl /usr/local/lib/perl/5.10.0 /usr/local/share/perl/5.10.0 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .). | |
| at /home/ray/.cpanm/work/1306173667.22117/DBICx-TestDatabase-0.04/t/lib/MySchema.pm line 5 | |
| BEGIN failed--compilation aborted at /home/ray/.cpanm/work/1306173667.22117/DBICx-TestDatabase-0.04/t/lib/MySchema.pm line 5. | |
| Compilation failed in require at (eval 11) line 3. | |
| # Looks like your test exited with 2 before it could output anything. | |
| t/testdatabase.t .. | |
| Dubious, test returned 2 (wstat 512, 0x200) | |
| Failed 5/5 subtests | |
| Test Summary Report | |
| ------------------- | |
| t/subclass.t (Wstat: 512 Tests: 0 Failed: 0) | |
| Non-zero exit status: 2 | |
| Parse errors: Bad plan. You planned 6 tests but ran 0. | |
| t/testdatabase.t (Wstat: 512 Tests: 0 Failed: 0) | |
| Non-zero exit status: 2 | |
| Parse errors: Bad plan. You planned 5 tests but ran 0. | |
| Files=3, Tests=2, 1 wallclock secs ( 0.03 usr 0.00 sys + 0.17 cusr 0.04 csys = 0.24 CPU) | |
| Result: FAIL | |
| Failed 2/3 test programs. 0/2 subtests failed. | |
| make: *** [test_dynamic] Error 2 | |
| -> FAIL Installing DBICx::TestDatabase failed. See /home/ray/.cpanm/build.log for details. | |
| -> FAIL Bailing out the installation for DBIx-Class-Tree-NestedSet-0.07. Retry with --prompt or --force. | |
| Searching Bio::PrimarySeq on cpanmetadb ... | |
| Already tried BioPerl-1.6.901. Skipping. | |
| Already tried DBIx::Class. Skipping. | |
| -> FAIL Bailing out the installation for Bio-Chado-Schema-0.08100. Retry with --prompt or --force. |
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