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Cricula NEXUS
#NEXUS
Begin trees; [Treefile saved Thu Aug 20 21:42:14 2015]
[!
>Data file = /Users/rpage/Sites/geojson-phylogeny-demo/bold-api/service/tmp/SAUPA642-10/SAUPA642-10.nex
>Neighbor-joining search settings:
> Ties (if encountered) will be broken systematically
> Distance measure = uncorrected ("p")
> (Tree is unrooted)
]
Translate
1 SAUPA645_10,
2 SAUPA642_10,
3 SAUPA641_10,
4 SAUPA348_10,
5 SAUPA330_10,
6 SAUPA325_10,
7 SAUPA324_10,
8 SAUPA129_09,
9 SARBB639_09,
10 SASNB003_09,
11 SASNB002_09,
12 SARBB733_09,
13 SAUPA069_09,
14 SAUPA052_09,
15 SASNB210_09,
16 SASNC2419_12,
17 SARBB601_09,
18 SARBB600_09,
19 SASNA999_09,
20 SAUPA073_09,
21 SAUPA072_09,
22 SARBB743_09,
23 SARBB742_09,
24 SARBB741_09,
25 SARBB740_09,
26 SARBB638_09,
27 SARBB636_09,
28 SAVSE192_12,
29 SAVSE191_12,
30 SASNB028_09,
31 SASNB027_09,
32 SAUPA051_09,
33 SAUPA053_09,
34 SAUPA639_10,
35 SAUPA366_10,
36 SAUPA365_10,
37 SAUPA364_10,
38 SAUPA347_10,
39 SAUPA346_10,
40 SAUPA068_09,
41 SASNB022_09,
42 SARBB643_09,
43 SAVSA376_10,
44 SAVSA377_10,
45 SASNB024_09,
46 SASNB023_09,
47 SAUPA322_10,
48 SAUPA321_10,
49 SAUPA320_10,
50 SARBB645_09,
51 SARBB646_09,
52 SAUPA319_10,
53 SASNB209_09,
54 SAUPA318_10,
55 SAUPA067_09,
56 SAUPA066_09,
57 SARBB640_09,
58 SAUPA637_10,
59 SARBB647_09,
60 GRACI494_09,
61 GRACI495_09,
62 SAUPA338_10,
63 SAUPA337_10,
64 SAUPA336_10,
65 SAUPA335_10,
66 SARBB620_09,
67 SARBB701_09,
68 SASNC1164_11,
69 SASNC1163_11,
70 SAVSE373_12,
71 SASNB894_10,
72 SASNB891_10,
73 SASNB889_10,
74 SASNB018_09,
75 SASNB189_09,
76 SARBB702_09,
77 LTOL529_07,
78 SASNB051_09,
79 SARBB604_09,
80 SARBB617_09,
81 SARBB615_09,
82 SARBB610_09,
83 SASNC1582_12,
84 SAUPA648_10,
85 SAUPA647_10,
86 SAUPA646_10,
87 SAUPA644_10,
88 SAUPA643_10,
89 SAUPA329_10,
90 SAUPA328_10,
91 SAUPA327_10,
92 SARBB745_09,
93 SARBB744_09,
94 SARBB739_09,
95 SARBB737_09,
96 SARBB635_09,
97 SAUPA358_10,
98 SARBB700_09,
99 SARBB699_09,
100 SASNB029_09
;
tree PAUP_1 = [&R] (((((((((((((1:0,2:0):0,3:0):0,4:0):0,5:0):0,6:0):0,7:0):0,8:0):0,9:0):0,10:0):0,11:0):0,12:0):0.006613,(13:7.817e-05,(((((((((((((((((((((14:-3.794e-05,49:3.794e-05):9.602e-05,50:-9.602e-05):3.268e-05,51:-6.468e-05):7.569e-05,19:-0.000108):2.253e-05,23:-8.734e-05):1.534e-05,27:-7.357e-05):1.120e-05,31:-6.374e-05):8.581e-06,35:-5.639e-05):6.822e-06,39:-5.068e-05):5.581e-06,43:-4.612e-05):4.670e-06,48:-4.241e-05):1.663e-05,(((((((((20:-6.075e-05,59:0.001581):3.069e-05,24:-3.069e-05):1.044e-05,28:-2.067e-05):5.331e-06,32:-1.567e-05):3.267e-06,36:-1.267e-05):2.225e-06,40:-1.067e-05):1.624e-06,44:-9.245e-06):4.242e-06,(((((((21:1.748e-06,(((((52:1.563e-05,54:-1.563e-05):7.896e-06,55:-7.896e-06):2.687e-06,56:-5.319e-06):1.372e-06,57:-4.031e-06):8.405e-07,58:-3.259e-06):0.001532):-2.660e-07,25:1.515e-06):-2.039e-07,29:1.340e-06):-1.621e-07,33:1.204e-06):-1.326e-07,37:1.096e-06):-1.110e-07,41:1.008e-06):-9.459e-08,45:9.343e-07):-8.665e-06):4.526e-06,46:-2.930e-06):-4.652e-05):2.981e-05,47:-1.978e-05):8.652e-07,42:-1.951e-05):8.431e-07,38:-1.927e-05):8.233e-07,34:-1.905e-05):8.055e-07,30:-1.886e-05):7.897e-07,26:-1.868e-05):7.756e-07,22:-1.852e-05):7.632e-07,18:-1.838e-05):7.524e-07,17:-1.826e-05):-7.633e-05):0.008629):0,(((((15:-3.616e-06,53:0.001523):1.827e-06,16:-1.827e-06):0.001913,(79:0.002259,82:0.003820):0.002645):0.001241,((((77:-8.585e-05,98:8.585e-05):0.001036,99:0.002042):0.002927,(((((((((((((83:0,84:0):0,85:0):0,86:0):0,87:0):0,88:0):0,89:0):0,90:0):0,91:0):0,92:0):0,93:0):0,94:0):0,95:0):0,96:0):0.005466):0.000417,((78:-0.000419,97:0.000419):0.002574,100:0.003723):0.003692):0.000902):0.001992,((((((((((((((60:-3.716e-06,80:0.001523):1.877e-06,61:-1.877e-06):6.387e-07,62:-1.264e-06):3.261e-07,63:-9.582e-07):1.998e-07,64:-7.748e-07):1.361e-07,65:-6.526e-07):9.930e-08,66:-5.654e-07):7.611e-08,68:-5.002e-07):6.052e-08,69:-4.495e-07):4.950e-08,71:-4.091e-07):4.142e-08,72:-3.762e-07):3.531e-08,73:-3.488e-07):4.383e-05,81:0.001476):0.002907,(67:0.001505,(((70:-6.612e-05,76:6.612e-05):3.340e-05,74:-3.340e-05):1.137e-05,75:-2.250e-05):0.001526):0.001608):0.001884):0.006757);
End;
begin characters;
dimensions nchar=2;
format datatype = geographic;
charstatelabels
1 latitude,
2 longitude
;
matrix
SAUPA645_10 4.5218 96.8576
SAUPA642_10 -0.45 100.417
SAUPA641_10 4.5218 96.8576
SAUPA348_10 -4.03 103.13
SAUPA330_10 2.8 98.9
SAUPA325_10 4.5324 96.8477
SAUPA324_10 4.2447 97.1861
SAUPA129_09 4.9175 96.0506
SARBB639_09 2.49 99.14
SASNB002_09 -0.46896 100.323
SAUPA069_09 -8.5 116.1
SAUPA052_09 -9.48 119.23
SASNB210_09 22.4818 94.6932
SAUPA073_09 -8.48 115.55
SAUPA072_09 -8.48 115.55
SARBB638_09 8.1 113.4
SARBB636_09 8.1 113.4
SAUPA051_09 -9.48 119.23
SAUPA053_09 -9.48 119.23
SAUPA639_10 -8.3 117.8
SAUPA366_10 -9.48 119.23
SAUPA365_10 -9.48 119.23
SAUPA364_10 -9.48 119.23
SAUPA347_10 -8.245 117.993
SAUPA346_10 -8.245 117.993
SAUPA068_09 -8.5 116.1
SAVSA376_10 -13.7333 116.433
SAVSA377_10 -13.7333 116.433
SAUPA322_10 -8.61 120.53
SAUPA321_10 -8.61 120.53
SAUPA320_10 -8.5 116.15
SAUPA319_10 -8.5 116.15
SASNB209_09 21.3719 93.9769
SAUPA318_10 -8.12 115.09
SAUPA067_09 -8.64 120.48
SAUPA066_09 -8.64 120.48
SAUPA637_10 -8.61 120.53
GRACI494_09 19.53 98.27
GRACI495_09 19.53 98.27
SAUPA338_10 16.833 98.25
SAUPA337_10 16.833 98.25
SAUPA336_10 14.5 99.5
SAUPA335_10 18.805 98.922
LTOL529_07 -2 101
SARBB604_09 12.51 92.49
SARBB610_09 26 94.2
SAUPA648_10 -7.67 111.18
SAUPA647_10 -8.1 114.3
SAUPA646_10 -8.1 114.3
SAUPA644_10 -6.72 106.73
SAUPA643_10 -6.9 106.9
SAUPA329_10 -6.72 106.73
SAUPA328_10 -6.72 106.73
SAUPA327_10 -6.72 106.73
SARBB635_09 8.1 113.4
SAUPA358_10 7.955 124.803
;
end;
begin notes;
alttaxnames tax_id =
[SAUPA645_10] 'BOLD:ACE9959'
[SAUPA642_10] 'BOLD:ACE9959'
[SAUPA641_10] 'BOLD:ACE9959'
[SAUPA348_10] 'BOLD:ACE9959'
[SAUPA330_10] 'BOLD:ACE9959'
[SAUPA325_10] 'BOLD:ACE9959'
[SAUPA324_10] 'BOLD:ACE9959'
[SAUPA129_09] 'BOLD:ACE9959'
[SARBB639_09] 'BOLD:ACE9959'
[SASNB003_09] 'BOLD:ACE9959'
[SASNB002_09] 'BOLD:ACE9959'
[SARBB733_09] 'BOLD:ACE9959'
[SAUPA069_09] 'BOLD:ACE9958'
[SAUPA052_09] 'BOLD:ACE9958'
[SASNB210_09] 'BOLD:AAA5977'
[SASNC2419_12] 'BOLD:AAA5977'
[SARBB601_09] 'BOLD:ACE9958'
[SARBB600_09] 'BOLD:ACE9958'
[SASNA999_09] 'BOLD:ACE9958'
[SAUPA073_09] 'BOLD:ACE9958'
[SAUPA072_09] 'BOLD:ACE9958'
[SARBB743_09] 'BOLD:ACE9958'
[SARBB742_09] 'BOLD:ACE9958'
[SARBB741_09] 'BOLD:ACE9958'
[SARBB740_09] 'BOLD:ACE9958'
[SARBB638_09] 'BOLD:ACE9958'
[SARBB636_09] 'BOLD:ACE9958'
[SAVSE192_12] 'BOLD:ACE9958'
[SAVSE191_12] 'BOLD:ACE9958'
[SASNB028_09] 'BOLD:ACE9958'
[SASNB027_09] 'BOLD:ACE9958'
[SAUPA051_09] 'BOLD:ACE9958'
[SAUPA053_09] 'BOLD:ACE9958'
[SAUPA639_10] 'BOLD:ACE9958'
[SAUPA366_10] 'BOLD:ACE9958'
[SAUPA365_10] 'BOLD:ACE9958'
[SAUPA364_10] 'BOLD:ACE9958'
[SAUPA347_10] 'BOLD:ACE9958'
[SAUPA346_10] 'BOLD:ACE9958'
[SAUPA068_09] 'BOLD:ACE9958'
[SASNB022_09] 'BOLD:ACE9958'
[SARBB643_09] 'BOLD:ACE9958'
[SAVSA376_10] 'BOLD:ACE9958'
[SAVSA377_10] 'BOLD:ACE9958'
[SASNB024_09] 'BOLD:ACE9958'
[SASNB023_09] 'BOLD:ACE9958'
[SAUPA322_10] 'BOLD:ACE9958'
[SAUPA321_10] 'BOLD:ACE9958'
[SAUPA320_10] 'BOLD:ACE9958'
[SARBB645_09] 'BOLD:ACE9958'
[SARBB646_09] 'BOLD:ACE9958'
[SAUPA319_10] 'BOLD:ACE9958'
[SASNB209_09] 'BOLD:AAA5977'
[SAUPA318_10] 'BOLD:ACE9958'
[SAUPA067_09] 'BOLD:ACE9958'
[SAUPA066_09] 'BOLD:ACE9958'
[SARBB640_09] 'BOLD:ACE9958'
[SAUPA637_10] 'BOLD:ACE9958'
[SARBB647_09] 'BOLD:ACE9958'
[GRACI494_09] 'BOLD:AAA5977'
[GRACI495_09] 'BOLD:AAA5977'
[SAUPA338_10] 'BOLD:AAA5977'
[SAUPA337_10] 'BOLD:AAA5977'
[SAUPA336_10] 'BOLD:AAA5977'
[SAUPA335_10] 'BOLD:AAA5977'
[SARBB620_09] 'BOLD:AAA5977'
[SARBB701_09] 'BOLD:AAA5977'
[SASNC1164_11] 'BOLD:AAA5977'
[SASNC1163_11] 'BOLD:AAA5977'
[SAVSE373_12] 'BOLD:AAA5977'
[SASNB894_10] 'BOLD:AAA5977'
[SASNB891_10] 'BOLD:AAA5977'
[SASNB889_10] 'BOLD:AAA5977'
[SASNB018_09] 'BOLD:AAA5977'
[SASNB189_09] 'BOLD:AAA5977'
[SARBB702_09] 'BOLD:AAA5977'
[LTOL529_07] 'BOLD:AAA5977'
[SASNB051_09] 'BOLD:AAA5977'
[SARBB604_09] 'BOLD:AAA5977'
[SARBB617_09] 'BOLD:AAA5977'
[SARBB615_09] 'BOLD:AAA5977'
[SARBB610_09] 'BOLD:AAA5977'
[SASNC1582_12] 'BOLD:AAA5977'
[SAUPA648_10] 'BOLD:AAA5977'
[SAUPA647_10] 'BOLD:AAA5977'
[SAUPA646_10] 'BOLD:AAA5977'
[SAUPA644_10] 'BOLD:AAA5977'
[SAUPA643_10] 'BOLD:AAA5977'
[SAUPA329_10] 'BOLD:AAA5977'
[SAUPA328_10] 'BOLD:AAA5977'
[SAUPA327_10] 'BOLD:AAA5977'
[SARBB745_09] 'BOLD:AAA5977'
[SARBB744_09] 'BOLD:AAA5977'
[SARBB739_09] 'BOLD:AAA5977'
[SARBB737_09] 'BOLD:AAA5977'
[SARBB635_09] 'BOLD:AAA5977'
[SAUPA358_10] 'BOLD:AAA5977'
[SARBB700_09] 'BOLD:AAA5977'
[SARBB699_09] 'BOLD:AAA5977'
[SASNB029_09] 'BOLD:AAA5977'
;
end;
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