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rdmpage / zotero-wikidata-lookup.js
Last active Jul 9, 2020 — forked from zuphilip/zotero-wikidata-lookup.js
Zotero Script for Wikidata Lookup
View zotero-wikidata-lookup.js
// Zotero script look up selected items in Wikidata and
// check whether the DOI can be found there. If results
// are found then the QIDs are saved in the corresponding
// items in the extra field. Some warnings are given for the
// other cases; thus watch the Zotero error console as well
// during execution of the script. [CC0]
var items = Zotero.getActiveZoteroPane().getSelectedItems();
var map = [];
rdmpage /
Last active Oct 3, 2018
OpenBioDiv query to get specimens from MNRJ

OpenBioDiv query to get specimens from MNRJ

Query by Viktor Senderov:

"In order to illustrate the capabilities of OpenBiodiv and draw attention to the impact of the tragically lost collection of the Museu Nacional de Rio de Janeiro (MNRJ), I can ask our system to give me the number of times a specimen from that collection was used in a taxonomic article, and in which ones."

See query at

rdmpage / clements2017-2018.html
Last active Sep 19, 2018
Comparison of eBird checklists for 2017 and 2018
View clements2017-2018.html
html, body{
#wrapper {
rdmpage /
Created Nov 10, 2017 — forked from justinbellamy/
Install Autoconf and Automake on OS X El Capitan
# Install autoconf, automake and libtool smoothly on Mac OS X.
# Newer versions of these libraries are available and may work better on OS X
# This script is originally from
export build=~/devtools # or wherever you'd like to build
rdmpage /
Created Apr 18, 2017 — forked from jprante/
JSON-LD in Elasticsearch
curl -XDELETE 'localhost:9200/jsonld'
curl -XPOST 'localhost:9200/jsonld'
curl -XPUT 'localhost:9200/jsonld/doc/1' -d '
"dc": "",
View Multiple identifiers
== Handling multiple identifiers
Many objects of interest will have multiple identifiers, and each identifier may have different, complementary data associated with it.
One approach is to treat each identifier as a node, and link it to node for the corresponding object (essentially the object is treated as a bnode). We therefore refer to an object as "the object identifier by <identifier>". If we have correctly associated multiple identifiers with the same object, then we can link the two objects together.
When we have a link to create to another object, we use MERGE (id)-[]-(object) to ensure that id-object exists, then we link to it. In the example below we have a work with DOI 10.3897/phytokeys.44.7993, which cites PMID 21653447. First we create the work with DOI 10.3897/phytokeys.44.7993.
rdmpage / query.txt
Created May 19, 2016
Querying Wikipedia for links to BioStor
View query.txt
The Mediawiki API can be used to find qhat wikipedia pages link to BioStor, e.g.:
See for details.
Begin trees; [Treefile saved Thu Aug 20 21:42:14 2015]
>Data file = /Users/rpage/Sites/geojson-phylogeny-demo/bold-api/service/tmp/SAUPA642-10/SAUPA642-10.nex
>Neighbor-joining search settings:
> Ties (if encountered) will be broken systematically
> Distance measure = uncorrected ("p")
> (Tree is unrooted)
rdmpage / Cricula.geojson
Last active May 10, 2016
Cricula barcode map
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rdmpage / primers.txt
Last active May 17, 2018
COI DNA barcode primer locations
View primers.txt
Reference COI is NC_003128 Buteo buteo COI
TZBRD035-15.COI-5P [648bp] ctgatctttggtgnatgagcaggcatagccggcacagcacttagcctactaatccgcgcagaactaggacagccaggaacactattgggagacgaccaaatctacaatgtaatcgtaacagcccacgctttcgtcataatcttcttcatagtcatacctattatgatcggaggcttcggaaactgactggttccactcataattggcgccccagacatagcattcccccgcataaataatatgagcttctgactcctcccaccttcttttctcctcctactagcctcctctacagtagaagccggggctggcactggatgaactgtttatccacccctagccggtaatcttgcccacgcgggcgcatcagtagacctggctattttttcccttcacttggcaggcgtgtcgtccatcttaggagctattaactttatcaccacaattattaacataaagccccctgcactatcacaatatcaaacacccctcttcgtatgatccgtcctcattactgctatcctcttactactatccctgccagtcctagccgccgggattacaatactcctcaccgatcgcaacctcaacactacattctttgaccctgcaggaggaggagacccaatcctgtatcaacacctattc
TZBRD019-15.COI-5P tcttcggcgcctgagctggtatagtcggcaccgccctcagcttactcatccgtgcagaactcggccaacccggcacactcctaggtgacgaccaaatttataacgtaatcgttaccgcacatgccttcgtaataatcttcttcatagttataccaatcatgatcggaggattcggaaactgacttgttccactcataattggcgctc