reprounzip-graph from whole-tale/provenance-examples

ajps.md

AJPS example

Real-world single-step Rscript with inputs and output

reprozip trace Rscript Stokes_AJPS_Replication.R
reprozip pack ajps
reprounzip graph --processes process --packages drop --otherfiles io --regex-filter ^/etc graphfile.dot ajps.rpz
dot -Tsvg graphfile.dot -o graph.svg

ajps.svg

multistep.md

Multistep example

Trace three separate very simple scripts (bash, bash, python) using the --continue flag

reprozip trace ./step1.sh
reprozip trace --continue ./step2.sh
reprozip trace --continue ./plot.py
reprozip pack multistep

reprounzip graph --processes process --packages drop --otherfiles io --regex-filter ^/etc graphfile.dot multistep.rpz
dot -Tsvg graphfile.dot -o graph.svg

multistep.svg

onestep.md

Onestep example

Runs three separate very simple scripts (bash, bash, python) via a master script.

reprozip trace ./run.sh
reprozip pack onestep

reprounzip graph --processes process --packages drop --otherfiles io --regex-filter ^/etc graphfile.dot onestep.rpz
dot -Tsvg graphfile.dot -o graph.svg

onestep.svg

water-tale.md

Water tale

Trace execution of nbconvert on a notebook.

reprozip trace  jupyter nbconvert   --ExecutePreprocessor.allow_errors=True   --ExecutePreprocessor.timeout=-1   --FilesWriter.build_directory=./results   --execute workspace/wt_quickstart.ipynb

reprozip pack watertale

reprounzip graph --processes process --packages drop --otherfiles io --regex-filter ^/etc graphfile.dot watertale.rpzk

water-tale.svg

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<g id="graph0" class="graph" transform="scale(1 1) rotate(0) translate(4 562.74)">
<title>G</title>
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<g id="clust1" class="cluster"><title>cluster_run0</title>
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<!-- prog0 -->
<g id="node1" class="node"><title>prog0</title>
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<g id="node2" class="node"><title>prog1</title>
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<text text-anchor="middle" x="662.041" y="-307.17" font-family="Times,serif" font-size="14.00" fill="white">/usr/local/bin/jupyter&#45;nbconvert (1)</text>
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<!-- prog0&#45;&gt;prog1 -->
<g id="edge1" class="edge"><title>prog0&#45;&gt;prog1</title>
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<!-- prog2 -->
<g id="node3" class="node"><title>prog2</title>
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<!-- prog1&#45;&gt;prog2 -->
<g id="edge2" class="edge"><title>prog1&#45;&gt;prog2</title>
<path fill="none" stroke="black" d="M766.181,-301.128C793.342,-298.81 822.632,-296.531 849.746,-294.87 910.41,-291.155 979.655,-288.779 1028.86,-287.407"/>
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</g>
<!-- prog3 -->
<g id="node4" class="node"><title>prog3</title>
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<!-- prog1&#45;&gt;prog3 -->
<g id="edge3" class="edge"><title>prog1&#45;&gt;prog3</title>
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<!-- prog4 -->
<g id="node5" class="node"><title>prog4</title>
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<!-- prog1&#45;&gt;prog4 -->
<g id="edge4" class="edge"><title>prog1&#45;&gt;prog4</title>
<path fill="none" stroke="black" d="M741.536,-328.892C793.17,-340.459 862.31,-355.405 923.746,-366.87 958.496,-373.355 997.425,-379.608 1029.27,-384.46"/>
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<!-- prog5 -->
<g id="node6" class="node"><title>prog5</title>
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<!-- prog1&#45;&gt;prog5 -->
<g id="edge5" class="edge"><title>prog1&#45;&gt;prog5</title>
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<!-- prog6 -->
<g id="node7" class="node"><title>prog6</title>
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<!-- prog1&#45;&gt;prog6 -->
<g id="edge6" class="edge"><title>prog1&#45;&gt;prog6</title>
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<!-- /test/water&#45;tale/results/wt_quickstart.html -->
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<!-- prog1&#45;&gt;/test/water&#45;tale/results/wt_quickstart.html -->
<g id="edge16" class="edge"><title>prog1&#45;&gt;/test/water&#45;tale/results/wt_quickstart.html</title>
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<!-- prog12 -->
<g id="node8" class="node"><title>prog12</title>
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<!-- prog6&#45;&gt;prog12 -->
<g id="edge7" class="edge"><title>prog6&#45;&gt;prog12</title>
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<!-- prog14 -->
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<g id="edge9" class="edge"><title>prog6&#45;&gt;prog14</title>
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<g id="edge8" class="edge"><title>prog12&#45;&gt;prog13</title>
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