reprounzip-graph from whole-tale/provenance-examples

ajps.md

AJPS example

Real-world single-step Rscript with inputs and output

reprozip trace Rscript Stokes_AJPS_Replication.R
reprozip pack ajps
reprounzip graph --processes process --packages drop --otherfiles io --regex-filter ^/etc graphfile.dot ajps.rpz
dot -Tsvg graphfile.dot -o graph.svg

ajps.svg

<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
 "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
<!-- Generated by graphviz version 2.38.0 (20140413.2041)
 -->
<!-- Title: G Pages: 1 -->
<svg width="1312pt" height="693pt"
 viewBox="0.00 0.00 1312.15 692.87" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
<g id="graph0" class="graph" transform="scale(1 1) rotate(0) translate(4 688.87)">
<title>G</title>
<polygon fill="white" stroke="none" points="-4,4 -4,-688.87 1308.15,-688.87 1308.15,4 -4,4"/>
<g id="clust1" class="cluster"><title>cluster_run0</title>
<polygon fill="none" stroke="black" points="8,-277.87 8,-676.87 1296.15,-676.87 1296.15,-277.87 8,-277.87"/>
<text text-anchor="middle" x="652.073" y="-661.67" font-family="Times,serif" font-size="14.00">run0</text>
</g>
<!-- prog0 -->
<g id="node1" class="node"><title>prog0</title>
<path fill="black" stroke="black" d="M154,-406.87C154,-406.87 28,-406.87 28,-406.87 22,-406.87 16,-400.87 16,-394.87 16,-394.87 16,-382.87 16,-382.87 16,-376.87 22,-370.87 28,-370.87 28,-370.87 154,-370.87 154,-370.87 160,-370.87 166,-376.87 166,-382.87 166,-382.87 166,-394.87 166,-394.87 166,-400.87 160,-406.87 154,-406.87"/>
<text text-anchor="middle" x="91" y="-385.17" font-family="Times,serif" font-size="14.00" fill="white">/usr/local/bin/Rscript (1)</text>
</g>
<!-- prog1 -->
<g id="node2" class="node"><title>prog1</title>
<path fill="black" stroke="black" d="M448.185,-406.87C448.185,-406.87 321.185,-406.87 321.185,-406.87 315.185,-406.87 309.185,-400.87 309.185,-394.87 309.185,-394.87 309.185,-382.87 309.185,-382.87 309.185,-376.87 315.185,-370.87 321.185,-370.87 321.185,-370.87 448.185,-370.87 448.185,-370.87 454.185,-370.87 460.185,-376.87 460.185,-382.87 460.185,-382.87 460.185,-394.87 460.185,-394.87 460.185,-400.87 454.185,-406.87 448.185,-406.87"/>
<text text-anchor="middle" x="384.685" y="-385.17" font-family="Times,serif" font-size="14.00" fill="white">/usr/local/lib/R/bin/R (1)</text>
</g>
<!-- prog0&#45;&gt;prog1 -->
<g id="edge1" class="edge"><title>prog0&#45;&gt;prog1</title>
<path fill="none" stroke="black" d="M166.359,-388.87C206.745,-388.87 256.847,-388.87 298.763,-388.87"/>
<polygon fill="black" stroke="black" points="298.955,-392.37 308.955,-388.87 298.955,-385.37 298.955,-392.37"/>
<text text-anchor="middle" x="196.5" y="-392.67" font-family="Times,serif" font-size="14.00">exec</text>
</g>
<!-- prog2 -->
<g id="node3" class="node"><title>prog2</title>
<path fill="black" stroke="black" d="M760.87,-406.87C760.87,-406.87 686.87,-406.87 686.87,-406.87 680.87,-406.87 674.87,-400.87 674.87,-394.87 674.87,-394.87 674.87,-382.87 674.87,-382.87 674.87,-376.87 680.87,-370.87 686.87,-370.87 686.87,-370.87 760.87,-370.87 760.87,-370.87 766.87,-370.87 772.87,-376.87 772.87,-382.87 772.87,-382.87 772.87,-394.87 772.87,-394.87 772.87,-400.87 766.87,-406.87 760.87,-406.87"/>
<text text-anchor="middle" x="723.87" y="-385.17" font-family="Times,serif" font-size="14.00" fill="white">/bin/uname (2)</text>
</g>
<!-- prog1&#45;&gt;prog2 -->
<g id="edge2" class="edge"><title>prog1&#45;&gt;prog2</title>
<path fill="none" stroke="black" d="M460.517,-388.87C522.07,-388.87 608.072,-388.87 664.591,-388.87"/>
<polygon fill="black" stroke="black" points="664.789,-392.37 674.789,-388.87 664.789,-385.37 664.789,-392.37"/>
<text text-anchor="middle" x="588.37" y="-392.67" font-family="Times,serif" font-size="14.00">fork+exec</text>
</g>
<!-- prog3 -->
<g id="node4" class="node"><title>prog3</title>
<path fill="black" stroke="black" d="M787.37,-560.87C787.37,-560.87 660.37,-560.87 660.37,-560.87 654.37,-560.87 648.37,-554.87 648.37,-548.87 648.37,-548.87 648.37,-536.87 648.37,-536.87 648.37,-530.87 654.37,-524.87 660.37,-524.87 660.37,-524.87 787.37,-524.87 787.37,-524.87 793.37,-524.87 799.37,-530.87 799.37,-536.87 799.37,-536.87 799.37,-548.87 799.37,-548.87 799.37,-554.87 793.37,-560.87 787.37,-560.87"/>
<text text-anchor="middle" x="723.87" y="-539.17" font-family="Times,serif" font-size="14.00" fill="white">/usr/local/lib/R/bin/R (3)</text>
</g>
<!-- prog1&#45;&gt;prog3 -->
<g id="edge3" class="edge"><title>prog1&#45;&gt;prog3</title>
<path fill="none" stroke="black" d="M425.356,-406.989C487.373,-435.313 607.122,-490.005 674.24,-520.66"/>
<polygon fill="black" stroke="black" points="672.799,-523.85 683.35,-524.82 675.708,-517.482 672.799,-523.85"/>
<text text-anchor="middle" x="588.37" y="-497.67" font-family="Times,serif" font-size="14.00">fork</text>
</g>
<!-- prog7 -->
<g id="node8" class="node"><title>prog7</title>
<path fill="black" stroke="black" d="M801.37,-321.87C801.37,-321.87 646.37,-321.87 646.37,-321.87 640.37,-321.87 634.37,-315.87 634.37,-309.87 634.37,-309.87 634.37,-297.87 634.37,-297.87 634.37,-291.87 640.37,-285.87 646.37,-285.87 646.37,-285.87 801.37,-285.87 801.37,-285.87 807.37,-285.87 813.37,-291.87 813.37,-297.87 813.37,-297.87 813.37,-309.87 813.37,-309.87 813.37,-315.87 807.37,-321.87 801.37,-321.87"/>
<text text-anchor="middle" x="723.87" y="-300.17" font-family="Times,serif" font-size="14.00" fill="white">/usr/local/lib/R/bin/exec/R (1)</text>
</g>
<!-- prog1&#45;&gt;prog7 -->
<g id="edge7" class="edge"><title>prog1&#45;&gt;prog7</title>
<path fill="none" stroke="black" d="M457.193,-370.844C511.173,-357.236 585.297,-338.55 641.536,-324.373"/>
<polygon fill="black" stroke="black" points="642.623,-327.709 651.464,-321.87 640.912,-320.921 642.623,-327.709"/>
<text text-anchor="middle" x="588.37" y="-347.67" font-family="Times,serif" font-size="14.00">exec</text>
</g>
<!-- prog4 -->
<g id="node5" class="node"><title>prog4</title>
<path fill="black" stroke="black" d="M1057.26,-645.87C1057.26,-645.87 930.258,-645.87 930.258,-645.87 924.258,-645.87 918.258,-639.87 918.258,-633.87 918.258,-633.87 918.258,-621.87 918.258,-621.87 918.258,-615.87 924.258,-609.87 930.258,-609.87 930.258,-609.87 1057.26,-609.87 1057.26,-609.87 1063.26,-609.87 1069.26,-615.87 1069.26,-621.87 1069.26,-621.87 1069.26,-633.87 1069.26,-633.87 1069.26,-639.87 1063.26,-645.87 1057.26,-645.87"/>
<text text-anchor="middle" x="993.758" y="-624.17" font-family="Times,serif" font-size="14.00" fill="white">/usr/local/lib/R/bin/R (4)</text>
</g>
<!-- prog3&#45;&gt;prog4 -->
<g id="edge4" class="edge"><title>prog3&#45;&gt;prog4</title>
<path fill="none" stroke="black" d="M775.364,-560.938C793.023,-567.116 813.019,-573.957 831.37,-579.87 860.24,-589.173 892.222,-598.821 920.049,-607.005"/>
<polygon fill="black" stroke="black" points="919.126,-610.382 929.707,-609.836 921.095,-603.664 919.126,-610.382"/>
<text text-anchor="middle" x="859.37" y="-599.67" font-family="Times,serif" font-size="14.00">fork</text>
</g>
<!-- prog5 -->
<g id="node6" class="node"><title>prog5</title>
<path fill="black" stroke="black" d="M1021.26,-537.87C1021.26,-537.87 966.258,-537.87 966.258,-537.87 960.258,-537.87 954.258,-531.87 954.258,-525.87 954.258,-525.87 954.258,-513.87 954.258,-513.87 954.258,-507.87 960.258,-501.87 966.258,-501.87 966.258,-501.87 1021.26,-501.87 1021.26,-501.87 1027.26,-501.87 1033.26,-507.87 1033.26,-513.87 1033.26,-513.87 1033.26,-525.87 1033.26,-525.87 1033.26,-531.87 1027.26,-537.87 1021.26,-537.87"/>
<text text-anchor="middle" x="993.758" y="-516.17" font-family="Times,serif" font-size="14.00" fill="white">/bin/sed (5)</text>
</g>
<!-- prog3&#45;&gt;prog5 -->
<g id="edge5" class="edge"><title>prog3&#45;&gt;prog5</title>
<path fill="none" stroke="black" d="M799.628,-535.724C810.28,-534.743 821.102,-533.766 831.37,-532.87 869.146,-529.575 911.924,-526.143 943.943,-523.633"/>
<polygon fill="black" stroke="black" points="944.243,-527.12 953.94,-522.852 943.698,-520.142 944.243,-527.12"/>
<text text-anchor="middle" x="859.37" y="-536.67" font-family="Times,serif" font-size="14.00">fork+exec</text>
</g>
<!-- prog6 -->
<g id="node7" class="node"><title>prog6</title>
<path fill="black" stroke="black" d="M1021.26,-591.87C1021.26,-591.87 966.258,-591.87 966.258,-591.87 960.258,-591.87 954.258,-585.87 954.258,-579.87 954.258,-579.87 954.258,-567.87 954.258,-567.87 954.258,-561.87 960.258,-555.87 966.258,-555.87 966.258,-555.87 1021.26,-555.87 1021.26,-555.87 1027.26,-555.87 1033.26,-561.87 1033.26,-567.87 1033.26,-567.87 1033.26,-579.87 1033.26,-579.87 1033.26,-585.87 1027.26,-591.87 1021.26,-591.87"/>
<text text-anchor="middle" x="993.758" y="-570.17" font-family="Times,serif" font-size="14.00" fill="white">/bin/sed (6)</text>
</g>
<!-- prog3&#45;&gt;prog6 -->
<g id="edge6" class="edge"><title>prog3&#45;&gt;prog6</title>
<path fill="none" stroke="black" d="M799.491,-551.505C845.635,-556.845 903.55,-563.547 943.894,-568.215"/>
<polygon fill="black" stroke="black" points="943.674,-571.713 954.01,-569.386 944.479,-564.76 943.674,-571.713"/>
<text text-anchor="middle" x="859.37" y="-564.67" font-family="Times,serif" font-size="14.00">fork+exec</text>
</g>
<!-- prog9 -->
<g id="node9" class="node"><title>prog9</title>
<path fill="black" stroke="black" d="M1018.26,-321.87C1018.26,-321.87 969.258,-321.87 969.258,-321.87 963.258,-321.87 957.258,-315.87 957.258,-309.87 957.258,-309.87 957.258,-297.87 957.258,-297.87 957.258,-291.87 963.258,-285.87 969.258,-285.87 969.258,-285.87 1018.26,-285.87 1018.26,-285.87 1024.26,-285.87 1030.26,-291.87 1030.26,-297.87 1030.26,-297.87 1030.26,-309.87 1030.26,-309.87 1030.26,-315.87 1024.26,-321.87 1018.26,-321.87"/>
<text text-anchor="middle" x="993.758" y="-300.17" font-family="Times,serif" font-size="14.00" fill="white">/bin/sh (8)</text>
</g>
<!-- prog7&#45;&gt;prog9 -->
<g id="edge8" class="edge"><title>prog7&#45;&gt;prog9</title>
<path fill="none" stroke="black" d="M813.7,-303.87C858.198,-303.87 910.216,-303.87 946.683,-303.87"/>
<polygon fill="black" stroke="black" points="947.005,-307.37 957.005,-303.87 947.005,-300.37 947.005,-307.37"/>
<text text-anchor="middle" x="859.37" y="-307.67" font-family="Times,serif" font-size="14.00">fork+exec</text>
</g>
<!-- prog11 -->
<g id="node11" class="node"><title>prog11</title>
<path fill="black" stroke="black" d="M1021.76,-375.87C1021.76,-375.87 965.758,-375.87 965.758,-375.87 959.758,-375.87 953.758,-369.87 953.758,-363.87 953.758,-363.87 953.758,-351.87 953.758,-351.87 953.758,-345.87 959.758,-339.87 965.758,-339.87 965.758,-339.87 1021.76,-339.87 1021.76,-339.87 1027.76,-339.87 1033.76,-345.87 1033.76,-351.87 1033.76,-351.87 1033.76,-363.87 1033.76,-363.87 1033.76,-369.87 1027.76,-375.87 1021.76,-375.87"/>
<text text-anchor="middle" x="993.758" y="-354.17" font-family="Times,serif" font-size="14.00" fill="white">/bin/sh (10)</text>
</g>
<!-- prog7&#45;&gt;prog11 -->
<g id="edge10" class="edge"><title>prog7&#45;&gt;prog11</title>
<path fill="none" stroke="black" d="M813.7,-321.776C856.997,-330.504 907.413,-340.667 943.696,-347.98"/>
<polygon fill="black" stroke="black" points="943.043,-351.419 953.537,-349.964 944.426,-344.557 943.043,-351.419"/>
<text text-anchor="middle" x="859.37" y="-339.67" font-family="Times,serif" font-size="14.00">fork+exec</text>
</g>
<!-- prog13 -->
<g id="node13" class="node"><title>prog13</title>
<path fill="black" stroke="black" d="M1021.76,-429.87C1021.76,-429.87 965.758,-429.87 965.758,-429.87 959.758,-429.87 953.758,-423.87 953.758,-417.87 953.758,-417.87 953.758,-405.87 953.758,-405.87 953.758,-399.87 959.758,-393.87 965.758,-393.87 965.758,-393.87 1021.76,-393.87 1021.76,-393.87 1027.76,-393.87 1033.76,-399.87 1033.76,-405.87 1033.76,-405.87 1033.76,-417.87 1033.76,-417.87 1033.76,-423.87 1027.76,-429.87 1021.76,-429.87"/>
<text text-anchor="middle" x="993.758" y="-408.17" font-family="Times,serif" font-size="14.00" fill="white">/bin/sh (12)</text>
</g>
<!-- prog7&#45;&gt;prog13 -->
<g id="edge12" class="edge"><title>prog7&#45;&gt;prog13</title>
<path fill="none" stroke="black" d="M760.479,-321.881C796.397,-339.559 853.766,-366.476 905.37,-384.87 917.644,-389.245 931.029,-393.59 943.551,-397.474"/>
<polygon fill="black" stroke="black" points="942.784,-400.9 953.371,-400.482 944.834,-394.207 942.784,-400.9"/>
<text text-anchor="middle" x="859.37" y="-381.67" font-family="Times,serif" font-size="14.00">fork+exec</text>
</g>
<!-- prog16 -->
<g id="node15" class="node"><title>prog16</title>
<path fill="black" stroke="black" d="M1021.76,-483.87C1021.76,-483.87 965.758,-483.87 965.758,-483.87 959.758,-483.87 953.758,-477.87 953.758,-471.87 953.758,-471.87 953.758,-459.87 953.758,-459.87 953.758,-453.87 959.758,-447.87 965.758,-447.87 965.758,-447.87 1021.76,-447.87 1021.76,-447.87 1027.76,-447.87 1033.76,-453.87 1033.76,-459.87 1033.76,-459.87 1033.76,-471.87 1033.76,-471.87 1033.76,-477.87 1027.76,-483.87 1021.76,-483.87"/>
<text text-anchor="middle" x="993.758" y="-462.17" font-family="Times,serif" font-size="14.00" fill="white">/bin/sh (15)</text>
</g>
<!-- prog7&#45;&gt;prog16 -->
<g id="edge14" class="edge"><title>prog7&#45;&gt;prog16</title>
<path fill="none" stroke="black" d="M761.214,-321.963C778.594,-331.946 798.745,-345.622 813.37,-361.87 825.072,-374.872 819.258,-384.249 831.37,-396.87 857.553,-424.156 870.656,-423.867 905.37,-438.87 917.446,-444.089 930.859,-448.758 943.478,-452.687"/>
<polygon fill="black" stroke="black" points="942.803,-456.139 953.388,-455.675 944.824,-449.437 942.803,-456.139"/>
<text text-anchor="middle" x="859.37" y="-435.67" font-family="Times,serif" font-size="14.00">fork+exec</text>
</g>
<!-- /test/ajps/Rplots.pdf -->
<g id="node17" class="node"><title>/test/ajps/Rplots.pdf</title>
<ellipse fill="#a3b4e0" stroke="black" cx="993.758" cy="-240.87" rx="88.2768" ry="26.7407"/>
<text text-anchor="middle" x="993.758" y="-244.67" font-family="Times,serif" font-size="14.00" fill="#131c39">Rplots.pdf</text>
<text text-anchor="middle" x="993.758" y="-229.67" font-family="Times,serif" font-size="14.00" fill="#131c39">/test/ajps/Rplots.pdf</text>
</g>
<!-- prog7&#45;&gt;/test/ajps/Rplots.pdf -->
<g id="edge18" class="edge"><title>prog7&#45;&gt;/test/ajps/Rplots.pdf</title>
<path fill="none" stroke="#000088" d="M801.636,-285.817C836.684,-277.574 878.162,-267.82 913.506,-259.508"/>
<polygon fill="#000088" stroke="#000088" points="914.369,-262.901 923.302,-257.204 912.766,-256.087 914.369,-262.901"/>
</g>
<!-- prog10 -->
<g id="node10" class="node"><title>prog10</title>
<path fill="black" stroke="black" d="M1276.15,-321.87C1276.15,-321.87 1186.15,-321.87 1186.15,-321.87 1180.15,-321.87 1174.15,-315.87 1174.15,-309.87 1174.15,-309.87 1174.15,-297.87 1174.15,-297.87 1174.15,-291.87 1180.15,-285.87 1186.15,-285.87 1186.15,-285.87 1276.15,-285.87 1276.15,-285.87 1282.15,-285.87 1288.15,-291.87 1288.15,-297.87 1288.15,-297.87 1288.15,-309.87 1288.15,-309.87 1288.15,-315.87 1282.15,-321.87 1276.15,-321.87"/>
<text text-anchor="middle" x="1231.15" y="-300.17" font-family="Times,serif" font-size="14.00" fill="white">/usr/bin/which (9)</text>
</g>
<!-- prog9&#45;&gt;prog10 -->
<g id="edge9" class="edge"><title>prog9&#45;&gt;prog10</title>
<path fill="none" stroke="black" d="M1030.51,-303.87C1065.75,-303.87 1120.46,-303.87 1163.7,-303.87"/>
<polygon fill="black" stroke="black" points="1163.86,-307.37 1173.86,-303.87 1163.86,-300.37 1163.86,-307.37"/>
<text text-anchor="middle" x="1128.15" y="-307.67" font-family="Times,serif" font-size="14.00">fork+exec</text>
</g>
<!-- prog12 -->
<g id="node12" class="node"><title>prog12</title>
<path fill="black" stroke="black" d="M1271.15,-375.87C1271.15,-375.87 1191.15,-375.87 1191.15,-375.87 1185.15,-375.87 1179.15,-369.87 1179.15,-363.87 1179.15,-363.87 1179.15,-351.87 1179.15,-351.87 1179.15,-345.87 1185.15,-339.87 1191.15,-339.87 1191.15,-339.87 1271.15,-339.87 1271.15,-339.87 1277.15,-339.87 1283.15,-345.87 1283.15,-351.87 1283.15,-351.87 1283.15,-363.87 1283.15,-363.87 1283.15,-369.87 1277.15,-375.87 1271.15,-375.87"/>
<text text-anchor="middle" x="1231.15" y="-354.17" font-family="Times,serif" font-size="14.00" fill="white">/bin/uname (11)</text>
</g>
<!-- prog11&#45;&gt;prog12 -->
<g id="edge11" class="edge"><title>prog11&#45;&gt;prog12</title>
<path fill="none" stroke="black" d="M1033.89,-357.87C1070.61,-357.87 1126.09,-357.87 1168.71,-357.87"/>
<polygon fill="black" stroke="black" points="1168.97,-361.37 1178.97,-357.87 1168.97,-354.37 1168.97,-361.37"/>
<text text-anchor="middle" x="1128.15" y="-361.67" font-family="Times,serif" font-size="14.00">fork+exec</text>
</g>
<!-- prog14 -->
<g id="node14" class="node"><title>prog14</title>
<path fill="black" stroke="black" d="M1273.65,-429.87C1273.65,-429.87 1188.65,-429.87 1188.65,-429.87 1182.65,-429.87 1176.65,-423.87 1176.65,-417.87 1176.65,-417.87 1176.65,-405.87 1176.65,-405.87 1176.65,-399.87 1182.65,-393.87 1188.65,-393.87 1188.65,-393.87 1273.65,-393.87 1273.65,-393.87 1279.65,-393.87 1285.65,-399.87 1285.65,-405.87 1285.65,-405.87 1285.65,-417.87 1285.65,-417.87 1285.65,-423.87 1279.65,-429.87 1273.65,-429.87"/>
<text text-anchor="middle" x="1231.15" y="-408.17" font-family="Times,serif" font-size="14.00" fill="white">/usr/bin/tput (13)</text>
</g>
<!-- prog13&#45;&gt;prog14 -->
<g id="edge13" class="edge"><title>prog13&#45;&gt;prog14</title>
<path fill="none" stroke="black" d="M1033.89,-411.87C1069.88,-411.87 1123.91,-411.87 1166.17,-411.87"/>
<polygon fill="black" stroke="black" points="1166.37,-415.37 1176.37,-411.87 1166.37,-408.37 1166.37,-415.37"/>
<text text-anchor="middle" x="1128.15" y="-415.67" font-family="Times,serif" font-size="14.00">fork+exec</text>
</g>
<!-- prog17 -->
<g id="node16" class="node"><title>prog17</title>
<path fill="black" stroke="black" d="M1260.65,-483.87C1260.65,-483.87 1201.65,-483.87 1201.65,-483.87 1195.65,-483.87 1189.65,-477.87 1189.65,-471.87 1189.65,-471.87 1189.65,-459.87 1189.65,-459.87 1189.65,-453.87 1195.65,-447.87 1201.65,-447.87 1201.65,-447.87 1260.65,-447.87 1260.65,-447.87 1266.65,-447.87 1272.65,-453.87 1272.65,-459.87 1272.65,-459.87 1272.65,-471.87 1272.65,-471.87 1272.65,-477.87 1266.65,-483.87 1260.65,-483.87"/>
<text text-anchor="middle" x="1231.15" y="-462.17" font-family="Times,serif" font-size="14.00" fill="white">/bin/rm (16)</text>
</g>
<!-- prog16&#45;&gt;prog17 -->
<g id="edge15" class="edge"><title>prog16&#45;&gt;prog17</title>
<path fill="none" stroke="black" d="M1033.89,-465.87C1073.71,-465.87 1135.61,-465.87 1179.22,-465.87"/>
<polygon fill="black" stroke="black" points="1179.34,-469.37 1189.34,-465.87 1179.34,-462.37 1179.34,-469.37"/>
<text text-anchor="middle" x="1128.15" y="-469.67" font-family="Times,serif" font-size="14.00">fork+exec</text>
</g>
<!-- /test/ajps/Stokes_AJPS_Replication.R -->
<g id="node18" class="node"><title>/test/ajps/Stokes_AJPS_Replication.R</title>
<ellipse fill="#a3b4e0" stroke="black" cx="384.685" cy="-242.87" rx="157.87" ry="26.7407"/>
<text text-anchor="middle" x="384.685" y="-246.67" font-family="Times,serif" font-size="14.00" fill="#131c39">arg</text>
<text text-anchor="middle" x="384.685" y="-231.67" font-family="Times,serif" font-size="14.00" fill="#131c39">/test/ajps/Stokes_AJPS_Replication.R</text>
</g>
<!-- /test/ajps/Stokes_AJPS_Replication.R&#45;&gt;prog7 -->
<g id="edge16" class="edge"><title>/test/ajps/Stokes_AJPS_Replication.R&#45;&gt;prog7</title>
<path fill="none" stroke="#8888cc" d="M493.764,-262.423C535.672,-270.004 583.332,-278.626 624.289,-286.036"/>
<polygon fill="#8888cc" stroke="#8888cc" points="623.813,-289.506 634.276,-287.843 625.059,-282.618 623.813,-289.506"/>
</g>
<!-- /test/ajps/newspapers_count.csv -->
<g id="node19" class="node"><title>/test/ajps/newspapers_count.csv</title>
<ellipse fill="#a3b4e0" stroke="black" cx="384.685" cy="-170.87" rx="134.201" ry="26.7407"/>
<text text-anchor="middle" x="384.685" y="-174.67" font-family="Times,serif" font-size="14.00" fill="#131c39">newspapers_count.csv</text>
<text text-anchor="middle" x="384.685" y="-159.67" font-family="Times,serif" font-size="14.00" fill="#131c39">/test/ajps/newspapers_count.csv</text>
</g>
<!-- /test/ajps/newspapers_count.csv&#45;&gt;prog7 -->
<g id="edge19" class="edge"><title>/test/ajps/newspapers_count.csv&#45;&gt;prog7</title>
<path fill="none" stroke="#8888cc" d="M483.836,-189.177C503.507,-194.025 523.819,-199.899 542.37,-206.87 594.712,-226.541 650.824,-258.623 686.345,-280.461"/>
<polygon fill="#8888cc" stroke="#8888cc" points="684.574,-283.481 694.917,-285.778 688.264,-277.532 684.574,-283.481"/>
</g>
<!-- /test/ajps/precincts0711.csv -->
<g id="node20" class="node"><title>/test/ajps/precincts0711.csv</title>
<ellipse fill="#a3b4e0" stroke="black" cx="384.685" cy="-98.8701" rx="117.26" ry="26.7407"/>
<text text-anchor="middle" x="384.685" y="-102.67" font-family="Times,serif" font-size="14.00" fill="#131c39">precincts0711.csv</text>
<text text-anchor="middle" x="384.685" y="-87.6701" font-family="Times,serif" font-size="14.00" fill="#131c39">/test/ajps/precincts0711.csv</text>
</g>
<!-- /test/ajps/precincts0711.csv&#45;&gt;prog7 -->
<g id="edge20" class="edge"><title>/test/ajps/precincts0711.csv&#45;&gt;prog7</title>
<path fill="none" stroke="#8888cc" d="M484.254,-113.187C504.196,-118.351 524.507,-125.361 542.37,-134.87 610.715,-171.252 672.351,-240.255 702.807,-277.855"/>
<polygon fill="#8888cc" stroke="#8888cc" points="700.195,-280.193 709.172,-285.82 705.663,-275.823 700.195,-280.193"/>
</g>
<!-- /test/ajps/replication_file.csv -->
<g id="node21" class="node"><title>/test/ajps/replication_file.csv</title>
<ellipse fill="#a3b4e0" stroke="black" cx="384.685" cy="-26.8701" rx="122.159" ry="26.7407"/>
<text text-anchor="middle" x="384.685" y="-30.6701" font-family="Times,serif" font-size="14.00" fill="#131c39">replication_file.csv</text>
<text text-anchor="middle" x="384.685" y="-15.6701" font-family="Times,serif" font-size="14.00" fill="#131c39">/test/ajps/replication_file.csv</text>
</g>
<!-- /test/ajps/replication_file.csv&#45;&gt;prog7 -->
<g id="edge17" class="edge"><title>/test/ajps/replication_file.csv&#45;&gt;prog7</title>
<path fill="none" stroke="#8888cc" d="M489.014,-41.1572C507.555,-46.3117 526.126,-53.3257 542.37,-62.8701 629.38,-113.996 687.809,-225.071 711.281,-276.6"/>
<polygon fill="#8888cc" stroke="#8888cc" points="708.11,-278.083 715.381,-285.789 714.502,-275.23 708.11,-278.083"/>
</g>
</g>
</svg>

multistep.md

Multistep example

Trace three separate very simple scripts (bash, bash, python) using the --continue flag

reprozip trace ./step1.sh
reprozip trace --continue ./step2.sh
reprozip trace --continue ./plot.py
reprozip pack multistep

reprounzip graph --processes process --packages drop --otherfiles io --regex-filter ^/etc graphfile.dot multistep.rpz
dot -Tsvg graphfile.dot -o graph.svg

multistep.svg

onestep.md

Onestep example

Runs three separate very simple scripts (bash, bash, python) via a master script.

reprozip trace ./run.sh
reprozip pack onestep

reprounzip graph --processes process --packages drop --otherfiles io --regex-filter ^/etc graphfile.dot onestep.rpz
dot -Tsvg graphfile.dot -o graph.svg

onestep.svg

water-tale.md

Water tale

Trace execution of nbconvert on a notebook.

reprozip trace  jupyter nbconvert   --ExecutePreprocessor.allow_errors=True   --ExecutePreprocessor.timeout=-1   --FilesWriter.build_directory=./results   --execute workspace/wt_quickstart.ipynb

reprozip pack watertale

reprounzip graph --processes process --packages drop --otherfiles io --regex-filter ^/etc graphfile.dot watertale.rpzk

water-tale.svg