avrilcoghlan

#!/usr/local/bin/perl

=head1 NAME

    run_cnvnator_on_assembly.pl

=head1 SYNOPSIS
 
    run_cnvnator_on_assembly.pl input_fasta input_bam output outputdir path_to_cnvnator windowsize
        where input_fasta is the input fasta file,

willurd

Each of these commands will run an ad hoc http static server in your current (or specified) directory, available at http://localhost:8000. Use this power wisely.

Discussion on reddit.

Python 2.x

$ python -m SimpleHTTPServer 8000

magicznyleszek

Jekyll & Liquid Cheatsheet

A list of the most common functionalities in Jekyll (Liquid). You can use Jekyll with GitHub Pages, just make sure you are using the proper version.

Running

Running a local server for testing purposes:

mattlewissf

git add -p is your friend

git add -p is basically "git add partial (or patch)"

Patch mode allows you to stage parts of a changed file, instead of the entire file. This allows you to make concise, well-crafted commits that make for an easier to read history. This feature can improve the quality of the commits. It also makes it easy to remove parts of the changes in a file that were only there for debugging purposes - prior to the commit without having to go back to the editor.

It allows you to see the changes (delta) to the code that you are trying to add, and lets you add them (or not) separately from each other using an interactive prompt. Here's how to use it:

from the command line, either use

• git add -p

bsweger

Useful Pandas Snippets

A personal diary of DataFrame munging over the years.

Data Types and Conversion

Convert Series datatype to numeric (will error if column has non-numeric values)
(h/t @makmanalp)

randyzwitch

import pandas as pd
from matplotlib import pyplot as plt
import matplotlib as mpl
import seaborn as sns
%matplotlib inline

#Read in data & create total column
stacked_bar_data = pd.read_csv("C:\stacked_bar.csv")
stacked_bar_data["total"] = stacked_bar_data.Series1 + stacked_bar_data.Series2

alimuldal

import numpy as np
from scipy import stats
from itertools import combinations
from statsmodels.stats.multitest import multipletests
from statsmodels.stats.libqsturng import psturng
import warnings


def kw_dunn(groups, to_compare=None, alpha=0.05, method='bonf'):
    """

rain1024

PdfLatex is a tool that converts Latex sources into PDF. This is specifically very important for researchers, as they use it to publish their findings. It could be installed very easily using Linux terminal, though this seems an annoying task on Windows. Installation commands are given below.

• Install the TexLive base

sudo apt-get install texlive-latex-base

• Also install the recommended and extra fonts to avoid running into the error [1], when trying to use pdflatex on latex files with more fonts.

wrobstory

jonperron

from django.http import HttpResponse
import pandas as pd

def foo():
  results = pd.Dataframe()

  response = HttpResponse(content_type='text/csv')
  response['Content-Disposition'] = 'attachment; filename=filename.csv'

  results.to_csv(path_or_buf=response,sep=';',float_format='%.2f',index=False,decimal=",")