start new:
tmux
start new with session name:
tmux new -s myname
import sys | |
import time | |
from Bio import Entrez | |
Entrez.email = "your.email@domain.tld" | |
if not Entrez.email: | |
print "you must add your email address" | |
sys.exit(2) | |
# create an empty list we will fill with the gene names |
a=[] | |
while STDIN.readline.chomp!="42" | |
a.push($_) | |
end | |
a.each { |s| puts s } |
library(limma) | |
GROUP="62976" | |
# targets.txt has columns of "FileName" and "Condition" e.g. | |
""" | |
FileName Condition | |
data/scrubbed/LT001098RU_COPD.45015.txt COPD | |
data/scrubbed/LT001600RL_ILD.45015.txt ILD | |
data/scrubbed/LT003990RU_CTRL.45015.txt CTRL | |
data/scrubbed/LT004173LL_ILD.45015.txt ILD |
Each of these commands will run an ad hoc http static server in your current (or specified) directory, available at http://localhost:8000. Use this power wisely.
$ python -m SimpleHTTPServer 8000
"""Kernel K-means""" | |
# Author: Mathieu Blondel <mathieu@mblondel.org> | |
# License: BSD 3 clause | |
import numpy as np | |
from sklearn.base import BaseEstimator, ClusterMixin | |
from sklearn.metrics.pairwise import pairwise_kernels | |
from sklearn.utils import check_random_state |
Last Update: May 13, 2019
Offline Version
# Inspired by the following sentence that I ran across this morning: | |
# | |
# "f_lineno is the current line number of the frame - writing to | |
# this from within a trace function jumps to the given line | |
# (only for the bottom-most frame). A debugger can implement a | |
# Jump command (aka Set Next Statement) by writing to f_lineno." | |
# | |
# https://docs.python.org/2/reference/datamodel.html | |
# | |
# There is an older implementation of a similar idea: |
library(tidyverse) | |
# Data is downloaded from here: | |
# https://www.kaggle.com/c/digit-recognizer | |
kaggle_data <- read_csv("~/Downloads/train.csv") | |
pixels_gathered <- kaggle_data %>% | |
mutate(instance = row_number()) %>% | |
gather(pixel, value, -label, -instance) %>% | |
extract(pixel, "pixel", "(\\d+)", convert = TRUE) |