Run dbgapr (within R 3.6.2 sif image)

dbgapr_R_3.6.2.info

# pull R 3.6.2 with devtools (docker image), convert it to singularity image (sif).
singularity pull docker://camaralab/rstudio_dev:3.6.2

# run R within the sif image
singularity run rstudio_dev_3.6.2.sif R

# in R, load the required dependencies for dbgapr-dev
install.packages("https://cran.r-project.org/src/contrib/Archive/tidyselect/tidyselect_1.0.0.tar.gz")
install.packages("https://cran.r-project.org/src/contrib/plogr_0.2.0.tar.gz")
install.packages("https://cran.r-project.org/src/contrib/Archive/dplyr/dplyr_0.8.4.tar.gz")

install.packages("https://cran.r-project.org/src/contrib/Archive/gtools/gtools_3.8.2.tar.gz")
install.packages("https://cran.r-project.org/src/contrib/Archive/gdata/gdata_2.18.0.tar.gz")

install.packages("https://cran.r-project.org/src/contrib/formatR_1.14.tar.gz")
install.packages("https://cran.r-project.org/src/contrib/lambda.r_1.2.4.tar.gz")
install.packages("https://cran.r-project.org/src/contrib/futile.options_1.0.1.tar.gz")
install.packages("https://cran.r-project.org/src/contrib/futile.logger_1.4.3.tar.gz")

install.packages("https://cran.r-project.org/src/contrib/Archive/XML/XML_3.99-0.3.tar.gz")

install.packages("https://cran.r-project.org/src/contrib/VennDiagram_1.7.3.tar.gz")

install.packages("https://cran.r-project.org/src/contrib/Archive/bitops/bitops_1.0-6.tar.gz")
install.packages("https://cran.r-project.org/src/contrib/Archive/RCurl/RCurl_1.98-1.1.tar.gz")

# finally install dbgapr-dev (forked, working version with fixed typo)
devtools::install_github("salvatoreloguercio/dbgapr_dev")