schema for all data generated during a clojush run, in protocal buffer format https://developers.google.com/protocol-buffers/

clojush.proto

message Run {
  required Configuration config = 1;
  repeated Generation generations = 2;
}

message Configuration {
  required string problemFile = 1;
  // arguments are stored as EDN export of clojure types
  required map<string, string> arguments = 2;

  required map<string, string> parameters = 3;

  required string clojush_version = 4;
  optional string git_commit = 5; 

  required double initialization_time = 6;
}

message Generation {
  repeated Individual population = 1;

  optional double reproduction_time = 2;
  required double fitness_time = 3;
  required double other_time = 4;
  optional Report report = 5;
}

message Error {
  // an error can be any number
  optional float float = 1;
  optional int32 int = 2;
  optional double double = 3;
}

message Individual {
  message PlushInstructionMap {
    required string instruction = 1;
    optional string UUID = 2;
    optional bool random_insertion = 3;
    optional bool silent = 4;
    optional int32 random_closes = 5;
    optional string parent_UUID = 6;
  }

  message PlushGenome {
    repeated PlushInstructionMap genome = 1;
  }
  required PlushGenome genome = 1;
  repeated string program = 2;
  repeated Error errors = 3;
  optional Error total_error = 4;
  optional Error normalized_error = 5;
  optional Error weighted_error = 6;
  optional map<string, Error> meta_errors = 7;
  repeated Error history = 8;
  repeated PlushGenome ancestors = 9;
  optional string uuid = 10;
  repeated string parent_UUIDs = 11;
  repeated string genetic_operators = 12;
  optional bool is_random_replacement = 13;
}

message Report {
  optional Individual best = 1;
  repeated Individual best_simplification = 2;

  message Lexicase = {
    repeated Error best_errors = 1;
    optional Individual best_simplification = 2;
  }
  optional Lexicase lexicase = 3;

  enum Outcome {
    SUCCESS = 1;
    FAILURE = 2;
    CONTINUE = 3;
  }
  required Outcome outcome = 4; 
  optional double time = 5;

  message ProblemSpecific = {
    repeated Error best_generalization_errors = 1;
  }
  optional ProblemSpecific problem_specific = 6; 

}





// excluded:
// solution rates for historically  assessed hardness
// elitegroups for elite group lexicase seelction
// implicit fitnesss haring fitness
// problem specific reports