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$ aws s3 ls s3://ws77111-v1-alignments|grep cram
2019-12-29 00:49:40  426776555 SRR1259601-0001.cram.gz
2019-12-29 01:35:34  456253719 SRR1259601-0002.cram.gz
2019-12-29 02:22:17  432592627 SRR1259601-0003.cram.gz
2019-12-29 03:07:25  455323986 SRR1259601-0004.cram.gz
2019-12-29 03:53:22  437195550 SRR1259601-0005.cram.gz
2019-12-29 04:03:35  141333491 SRR1259601-0006.cram.gz
2019-12-29 00:55:39  424405382 SRR1259602-0001.cram.gz
2019-12-29 01:43:36  470357257 SRR1259602-0002.cram.gz
2019-12-29 02:32:01  438627995 SRR1259602-0003.cram.gz

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--- supplements/MatrixSVM/Makefile	2008-11-04 18:34:55.000000000 -0500
+++ supplements.build/MatrixSVM/Makefile	2018-06-19 08:50:14.203123343 -0400
@@ -7,7 +7,7 @@
 #
 
 CC=gcc                          # used C-compiler
-CFLAGS= -O3                     # release C-Compiler flags
+CFLAGS= -O3  -fPIC                    # release C-Compiler flags
 #CFLAGS=   -g -Wall -pedantic  # debugging C-Compiler flags
 LD=gcc                          # used linker

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foo = File.new("ifs", "w")

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// compile with g++ bug.cpp -fPIC
// This will produce this error with g++ 4.4.7
// ./a.out: symbol lookup error: ./a.out: undefined symbol: _ZZN1A1B3fooERKSsS2_E8CONSTANT

#include <string>

namespace A
{

class B

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#include <string>

namespace A
{

class B
{
    public:
        B();
        ~B();

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------------------------------------------------------------------------
Program   : /gpfs/mira-fs1/projects/CompBIO/Projects/automated-tests/spate-Iowa_Native_Prairie_Soil-2014-12-10-20-26-41.spate
------------------------------------------------------------------------
+++ID Rank: 34, TGID: 1, Core: 13, HWTID:3 TID: 355 State: RUN 

0000000001548678
abort
/bgsys/drivers/V1R2M2/ppc64/toolchain/gnu/glibc-2.12.2/stdlib/abort.c:77

0000000001542788

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TLB   V EA Range                          RA Range                          Size  ThID WIMGE RWXRWX XSSP TID  TL
----- - ---------------- ---------------- ---------------- ---------------- ----- ---- ----- ------ ---- ---- --
  0:2 V 0004063888000000-0004063888FFFFFF 0000010088000000-0000010088FFFFFF 16MB  1111 -IM-- RWXrw- ---- 0080 00
  0:3 V 0000000000001000-00000000000FFFFF 0000000000001000-00000000000FFFFF 1MB   1111 --M-- R-X--- X--- 0000 00
  1:2 V 0004063889000000-0004063889FFFFFF 0000010089000000-0000010089FFFFFF 16MB  1111 -IM-- RWXrw- ---- 0080 00
  1:3 V 0000000000100000-00000000001FFFFF 0000000000100000-00000000001FFFFF 1MB   1111 --M-- RWX--- ---- 0000 00
  2:1 V 000406388A000000-000406388AFFFFFF 000001008A000000-000001008AFFFFFF 16MB  1111 -IM-- RWXrw- ---- 0080 00
  2:2 V 0000010002000000-0000010002FFFFFF 0000010002000000-0000010002FFFFFF 16MB  1111 -IM-- RW---- ---- 0000 00
  2:3 V 0000000000200000-00000000002FFFFF 0000000000200000-00000000002FFFFF 1MB   1111 --M-- RWX--- ---- 0000 00
  3:2 V

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[boisvert@cetuslac1 biosal]$ git diff
diff --git a/core/system/memory.c b/core/system/memory.c
index 534dd24..c1282f1 100644
--- a/core/system/memory.c
+++ b/core/system/memory.c
@@ -628,12 +628,12 @@ void core_memory_initialize_memory_subsystem()
      */
 #ifdef __bgq__
 
-        /*

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$ cloc mothur
     814 text files.
     814 unique files.                                          
      46 files ignored.

http://cloc.sourceforge.net v 1.60  T=5.60 s (143.7 files/s, 41055.9 lines/s)
--------------------------------------------------------------------------------
Language                      files          blank        comment           code
--------------------------------------------------------------------------------
C++                             380          34767          21318         137141

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DEBUG MEMORY REQUESTED 1107296256 bytes !
DEBUG MEMORY REQUESTED 1107296256 bytes !
DEBUG MEMORY REQUESTED 1107296256 bytes !
DEBUG MEMORY REQUESTED 1107296256 bytes !
MEMORY 1 s node/0 4668375040 bytes
MEMORY 1 s node/2 4602212352 bytes
MEMORY 1 s node/1 4601540608 bytes
MEMORY 1 s node/3 4602830848 bytes
MEMORY 2 s node/0 4668375040 bytes
MEMORY 2 s node/2 4602212352 bytes