create dbxref links for jbrowse

fmtDetailValue_Dbxref.js

fmtDetailValue_Dbxref : function(dbxref) { 
    if (typeof dbxref != 'string') { 
        return dbxref;
    } 
    var dbid = dbxref.split(':'); 
    var prefix = ''; 
    switch (dbid[0]) { 
      case 'InterPro': 
        prefix = 'http://www.ebi.ac.uk/interpro/entry/'; 
        break; 
      case 'Pfam': 
        prefix = 'http://pfam.sanger.ac.uk/family/'; 
        break; 
      case 'Reactome': 
        prefix = 'http://www.reactome.org/content/detail/'; 
        break; 
      case 'UniPathway': 
        prefix = 'http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid='; 
        break; 
      case 'KEGG': 
        prefix = 'http://www.genome.jp/kegg-bin/show_pathway?ec'; 
        break; 
      case 'ProSitePatterns': 
        prefix = 'http://prosite.expasy.org/'; 
        break; 
      case 'ProSiteProfiles': 
        prefix = 'http://prosite.expasy.org/cgi-bin/prosite/PSView.cgi?ac='; 
        break; 
      case 'SMART': 
        prefix = 'http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN='; 
        break; 
      case 'SUPERFAMILY': 
        prefix ='http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?sunid=';
        dbid[1] = dbid[1].replace("SSF", "");
        break;
      case 'Gene3D': 
        prefix ='http://www.cathdb.info/version/latest/superfamily/';
        dbid[1] = dbid[2];
        break;
      case 'PIRSF': 
        prefix = 'http://pir.georgetown.edu/cgi-bin/ipcSF?id='; 
        break; 
      case 'ProDom': 
        prefix = 'http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query='; 
        break; 
      case 'TIGRFAM': 
        prefix = 'http://www.jcvi.org/cgi-bin/tigrfams/HmmReportPage.cgi?acc='; 
        break;
      default: 
        return dbxref; 
    }; 
    return '<a href=\"'+ prefix + dbid[1] + '\">' + dbxref + '</a>'; 
}

minified for trackList.json:

"fmtDetailValue_Dbxref" : "function(dbxref) { if (typeof dbxref != 'string') { return dbxref; } var dbid = dbxref.split(':'); var prefix= ''; switch (dbid[0]) { case 'InterPro': prefix = 'http://www.ebi.ac.uk/interpro/entry/'; break; case 'Pfam': prefix = 'http://pfam.xfam.org/family/'; break; case 'Reactome': prefix = 'http://www.reactome.org/content/detail/'; break; case 'UniPathway': prefix = 'http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid='; break; case 'KEGG': prefix = 'http://www.genome.jp/kegg-bin/show_pathway?ec'; break; case 'ProSitePatterns': prefix = 'http://prosite.expasy.org/'; break; case 'ProSiteProfiles': prefix = 'http://prosite.expasy.org/cgi-bin/prosite/PSView.cgi?ac='; break; case 'SMART': prefix = 'http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN='; break; case 'SUPERFAMILY': prefix = 'http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?sunid='; dbid[1] = dbid[1].replace(\"SSF\", \"\"); break; case 'Gene3D': prefix ='http://www.cathdb.info/version/latest/superfamily/'; dbid[1] = dbid[2]; break; case 'PIRSF': prefix = 'http://pir.georgetown.edu/cgi-bin/ipcSF?id='; break; case 'ProDom': prefix = 'http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query='; break; case 'TIGRFAM': prefix = 'http://www.jcvi.org/cgi-bin/tigrfams/HmmReportPage.cgi?acc='; break;default: return dbxref; }; return '<a href=\"'+ prefix + dbid[1] + '\">' + dbxref + '</a>'; }"

this is great :) exactly the type of thing the (clumsily designed, I can say that since I sort of made it lol) fmtDetailValues thing was intended for