stephenturner

# Stephen Turner
# http://StephenTurner.us/
# http://GettingGeneticsDone.blogspot.com/
# See license at http://gettinggeneticsdone.blogspot.com/p/copyright.html

# Last updated: Tuesday, April 19, 2011
# R code for making manhattan plots and QQ plots from plink output files. 
# manhattan() with GWAS data this can take a lot of memory, recommended for use on 64bit machines only, for now. 
# Altnernatively, use bmanhattan() , i.e., base manhattan. uses base graphics. way faster.

donny-dont

#ifdef _WIN32
#include <malloc.h>
#endif
#include <cstdint>
#include <vector>
#include <iostream>

/**
 * Allocator for aligned data.

PhDP

//: clang -DHAVE_INLINE -O3 randgsl.c -o randgsl -lgsl -lgslcblas

#include <stdlib.h>
#include <stdio.h>
#include <time.h>
#include <gsl/gsl_rng.h>
#include <gsl/gsl_randist.h>

int main(int argc, const char *argv[])

geofferyzh

##########################################################################
# -----------------------------------------------------------------------#
# -------------------- Similarity Metrics (CF) --------------------------#
# ---------------------Author: Shaohua Zhang  ---------------------------#
##########################################################################


# sample data 1
Mov1 <- c(4,4,3,4,2)
Mov2 <- c(NA,2,NA,4,1)

romainfrancois

#include <Rcpp.h>
using namespace Rcpp ;

template <typename T>
inline void set_item_impl( List& target, int i, const T& obj, CharacterVector& names, traits::true_type ){
    target[i] = obj.object ;
    names[i] = obj.name ;
}

template <typename T>

romainfrancois

#include <Rcpp.h>
using namespace Rcpp ;

template <typename T>
inline void set_item_impl( List& target, int i, const T& obj, CharacterVector& names, traits::true_type ){
    target[i] = obj.object ;
    names[i] = obj.name ;
}

template <typename T>

gizmaa

Plotting

Last Update: May 13, 2019
Offline Version

Contents

• Translating
• Important Note
Basic Plot

rsobik

#===============================================================================
# Filename:  boost.sh
# Author:    Pete Goodliffe
# Copyright: (c) Copyright 2009 Pete Goodliffe
# Licence:   Please feel free to use this, with attribution
# Modified version
#===============================================================================
#
# Builds a Boost framework for the iPhone.
# Creates a set of universal libraries that can be used on an iPhone and in the

trestletech

library(shiny)

shinyServer(function(input, output, session) {
  # The number of iterations to perform
  maxIter <- 50
  
  # Track the start and elapsed time
  startTime <- Sys.time()  
  output$elapsed <- renderText({

nicebread

These code snippets have been tested on R 3.1.0 and Mac OS 10.9.3. They presumably do *not* work on R 2.X!

## Enter these commands in the Mac OS Terminal

# use faster vecLib library
cd /Library/Frameworks/R.framework/Resources/lib
ln -sf  /System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Versions/Current/libBLAS.dylib libRblas.dylib

# return to default settings
cd /Library/Frameworks/R.framework/Resources/lib