yoosuf

# List all containers (only IDs)
docker ps -aq

# Stop all running containers
docker stop $(docker ps -aq)

# Remove all containers
docker rm $(docker ps -aq)

# Remove all images

tabe

How to install sf 0.7-6 on macOS Mojave with MacPorts

Prerequisites:

- installing R, pkg-config, and gdal via MacPorts.
Note that proj (proj5) is automatically installed as a dependency for gdal.

- downloading the source tarball sf_0.7-6.tar.gz in the current directory

Then:

jblachly

1. Make sure configure can find sys/stat.h:

Modify bcl2fastq/src/cmake/macros.cmake

Find the last block:

#
# Macro to find libraries, with support for static-only search
#
macro(bcl2fastq_find_header_or_die variable file)

pierrejoubert73

How to add a collapsible section in markdown

1. Example

Click me

Heading

1. Foo
2. Bar
   • Baz

• Qux

joyrexus

collapsible markdown?

CLICK ME

yes, even hidden code blocks!

print("hello world!")

pkuczynski

#!/bin/sh
parse_yaml() {
   local prefix=$2
   local s='[[:space:]]*' w='[a-zA-Z0-9_]*' fs=$(echo @|tr @ '\034')
   sed -ne "s|^\($s\)\($w\)$s:$s\"\(.*\)\"$s\$|\1$fs\2$fs\3|p" \
        -e "s|^\($s\)\($w\)$s:$s\(.*\)$s\$|\1$fs\2$fs\3|p"  $1 |
   awk -F$fs '{
      indent = length($1)/2;
      vname[indent] = $2;
      for (i in vname) {if (i > indent) {delete vname[i]}}

stephenhardy

-- Remove the history from 
rm -rf .git

-- recreate the repos from the current content only
git init
git add .
git commit -m "Initial commit"

-- push to the github remote repos ensuring you overwrite history
git remote add origin git@github.com:<YOUR ACCOUNT>/<YOUR REPOS>.git

mkweskin

pandoc -f markdown -t mediawiki test.md -o test.wiki

# Thanks to @tillmanj for the updated formatting

nathanhaigh

#!/bin/bash
# Usage: deinterleave_fastq.sh < interleaved.fastq f.fastq r.fastq [compress]
# 
# Deinterleaves a FASTQ file of paired reads into two FASTQ
# files specified on the command line. Optionally GZip compresses the output
# FASTQ files using pigz if the 3rd command line argument is the word "compress"
# 
# Can deinterleave 100 million paired reads (200 million total
# reads; a 43Gbyte file), in memory (/dev/shm), in 4m15s (255s)
#